HEADER TRANSFERASE/TRANSFERASE INHIBITOR 07-JUL-14 4QTA TITLE STRUCTURE OF HUMAN ERK2 IN COMPLEX WITH SCH772984 REVEALING A NOVEL TITLE 2 INHIBITOR-INDUCED BINDING POCKET COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN; COMPND 5 SYNONYM: MAP KINASE 1, MAPK 1, ERT1, EXTRACELLULAR SIGNAL-REGULATED COMPND 6 KINASE 2, ERK-2, MAP KINASE ISOFORM P42, P42-MAPK, MITOGEN-ACTIVATED COMPND 7 PROTEIN KINASE 2, MAP KINASE 2, MAPK 2; COMPND 8 EC: 2.7.11.24; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERK2, MAPK1, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 TRANSFERASE, KINASE, MAPK, SIGNALLING, INHIBITOR, ALLOSTERIC, KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM (SGC), TRANSFERASE-TRANSFERASE KEYWDS 4 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,P.SAVITSKY,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 20-SEP-23 4QTA 1 REMARK SEQADV REVDAT 2 24-SEP-14 4QTA 1 JRNL REVDAT 1 23-JUL-14 4QTA 0 JRNL AUTH A.CHAIKUAD,E.M C TACCONI,J.ZIMMER,Y.LIANG,N.S.GRAY, JRNL AUTH 2 M.TARSOUNAS,S.KNAPP JRNL TITL A UNIQUE INHIBITOR BINDING SITE IN ERK1/2 IS ASSOCIATED WITH JRNL TITL 2 SLOW BINDING KINETICS. JRNL REF NAT.CHEM.BIOL. V. 10 853 2014 JRNL REFN ISSN 1552-4450 JRNL PMID 25195011 JRNL DOI 10.1038/NCHEMBIO.1629 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 57320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3046 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4169 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2715 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.381 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2971 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2885 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4031 ; 1.698 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6649 ; 0.853 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 5.318 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;40.044 ;24.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 525 ;11.930 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.069 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3482 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 689 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1368 ; 0.994 ; 0.953 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1367 ; 0.993 ; 0.952 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1715 ; 1.592 ; 1.423 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1715 ; 1.592 ; 1.423 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1603 ; 1.800 ; 1.212 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1603 ; 1.800 ; 1.212 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2302 ; 2.745 ; 1.721 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3786 ; 6.887 ;10.129 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3784 ; 6.889 ;10.125 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8040 57.5150 44.4250 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0269 REMARK 3 T33: 0.0219 T12: 0.0108 REMARK 3 T13: 0.0076 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.0451 L22: 1.6765 REMARK 3 L33: 1.5445 L12: -0.5799 REMARK 3 L13: -0.1906 L23: 0.6204 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.0423 S13: 0.0251 REMARK 3 S21: 0.1127 S22: 0.0120 S23: 0.0512 REMARK 3 S31: -0.1020 S32: -0.1351 S33: -0.0110 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5050 61.1520 28.6040 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: 0.0234 REMARK 3 T33: 0.0332 T12: 0.0057 REMARK 3 T13: 0.0058 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.6845 L22: 0.6126 REMARK 3 L33: 1.9849 L12: -0.2335 REMARK 3 L13: 0.9465 L23: -0.8950 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: -0.0442 S13: 0.0166 REMARK 3 S21: 0.0593 S22: 0.0768 S23: 0.0327 REMARK 3 S31: -0.0745 S32: -0.1399 S33: -0.0368 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 191 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3120 47.2090 14.2980 REMARK 3 T TENSOR REMARK 3 T11: 0.2743 T22: 0.0725 REMARK 3 T33: 0.4146 T12: -0.0259 REMARK 3 T13: 0.0083 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 4.3421 L22: 8.7380 REMARK 3 L33: 8.4501 L12: -3.1225 REMARK 3 L13: -3.4445 L23: 4.4511 REMARK 3 S TENSOR REMARK 3 S11: -0.2370 S12: -0.0036 S13: -0.8418 REMARK 3 S21: 0.1246 S22: 0.0519 S23: 0.0195 REMARK 3 S31: 1.2956 S32: -0.0438 S33: 0.1851 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 206 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2760 56.9830 10.7770 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.0619 REMARK 3 T33: 0.0804 T12: -0.0177 REMARK 3 T13: -0.0109 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 2.1469 L22: 0.9886 REMARK 3 L33: 0.9201 L12: 0.1221 REMARK 3 L13: 0.0245 L23: -0.1818 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: 0.2285 S13: -0.3169 REMARK 3 S21: -0.1074 S22: 0.0179 S23: 0.0516 REMARK 3 S31: 0.1595 S32: -0.0692 S33: -0.0117 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 335 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): 46.2330 49.2410 35.5410 REMARK 3 T TENSOR REMARK 3 T11: 0.0254 T22: 0.0393 REMARK 3 T33: 0.0332 T12: 0.0076 REMARK 3 T13: 0.0182 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.4389 L22: 8.5487 REMARK 3 L33: 2.6127 L12: 1.3409 REMARK 3 L13: 0.1584 L23: 1.7855 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.1652 S13: -0.0141 REMARK 3 S21: -0.3599 S22: 0.0454 S23: -0.3171 REMARK 3 S31: -0.1216 S32: 0.1447 S33: -0.0513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : KIRKPATRICK BAEZ BIMORPH MIRROR REMARK 200 PAIR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60366 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 33.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ERK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000 AND 0.2 M AMMONIUM REMARK 280 SULPHATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.41000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.79500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.79500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.41000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 PRO A 176 REMARK 465 ASP A 177 REMARK 465 HIS A 178 REMARK 465 ASP A 179 REMARK 465 HIS A 180 REMARK 465 THR A 181 REMARK 465 GLY A 182 REMARK 465 PHE A 183 REMARK 465 LEU A 184 REMARK 465 THR A 185 REMARK 465 GLU A 186 REMARK 465 TYR A 187 REMARK 465 VAL A 188 REMARK 465 ALA A 189 REMARK 465 ARG A 359 REMARK 465 SER A 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 175 CG OD1 OD2 REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 607 O HOH A 853 2.02 REMARK 500 OD1 ASP A 162 O HOH A 849 2.13 REMARK 500 O HOH A 602 O HOH A 745 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 64 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 149 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 148 -5.81 77.72 REMARK 500 ASP A 149 45.52 -145.37 REMARK 500 ASP A 167 87.60 71.53 REMARK 500 LYS A 203 161.09 73.79 REMARK 500 LEU A 294 54.35 -97.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 38Z A 411 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QTB RELATED DB: PDB REMARK 900 RELATED ID: 4QTC RELATED DB: PDB REMARK 900 RELATED ID: 4QTD RELATED DB: PDB REMARK 900 RELATED ID: 4QTE RELATED DB: PDB DBREF 4QTA A 1 360 UNP P28482 MK01_HUMAN 1 360 SEQADV 4QTA SER A 0 UNP P28482 EXPRESSION TAG SEQRES 1 A 361 SER MET ALA ALA ALA ALA ALA ALA GLY ALA GLY PRO GLU SEQRES 2 A 361 MET VAL ARG GLY GLN VAL PHE ASP VAL GLY PRO ARG TYR SEQRES 3 A 361 THR ASN LEU SER TYR ILE GLY GLU GLY ALA TYR GLY MET SEQRES 4 A 361 VAL CYS SER ALA TYR ASP ASN VAL ASN LYS VAL ARG VAL SEQRES 5 A 361 ALA ILE LYS LYS ILE SER PRO PHE GLU HIS GLN THR TYR SEQRES 6 A 361 CYS GLN ARG THR LEU ARG GLU ILE LYS ILE LEU LEU ARG SEQRES 7 A 361 PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN ASP ILE ILE SEQRES 8 A 361 ARG ALA PRO THR ILE GLU GLN MET LYS ASP VAL TYR ILE SEQRES 9 A 361 VAL GLN ASP LEU MET GLU THR ASP LEU TYR LYS LEU LEU SEQRES 10 A 361 LYS THR GLN HIS LEU SER ASN ASP HIS ILE CYS TYR PHE SEQRES 11 A 361 LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR ILE HIS SER SEQRES 12 A 361 ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO SER ASN LEU SEQRES 13 A 361 LEU LEU ASN THR THR CYS ASP LEU LYS ILE CYS ASP PHE SEQRES 14 A 361 GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS ASP HIS THR SEQRES 15 A 361 GLY PHE LEU THR GLU TYR VAL ALA THR ARG TRP TYR ARG SEQRES 16 A 361 ALA PRO GLU ILE MET LEU ASN SER LYS GLY TYR THR LYS SEQRES 17 A 361 SER ILE ASP ILE TRP SER VAL GLY CYS ILE LEU ALA GLU SEQRES 18 A 361 MET LEU SER ASN ARG PRO ILE PHE PRO GLY LYS HIS TYR SEQRES 19 A 361 LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE LEU GLY SER SEQRES 20 A 361 PRO SER GLN GLU ASP LEU ASN CYS ILE ILE ASN LEU LYS SEQRES 21 A 361 ALA ARG ASN TYR LEU LEU SER LEU PRO HIS LYS ASN LYS SEQRES 22 A 361 VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA ASP SER LYS SEQRES 23 A 361 ALA LEU ASP LEU LEU ASP LYS MET LEU THR PHE ASN PRO SEQRES 24 A 361 HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU ALA HIS PRO SEQRES 25 A 361 TYR LEU GLU GLN TYR TYR ASP PRO SER ASP GLU PRO ILE SEQRES 26 A 361 ALA GLU ALA PRO PHE LYS PHE ASP MET GLU LEU ASP ASP SEQRES 27 A 361 LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE PHE GLU GLU SEQRES 28 A 361 THR ALA ARG PHE GLN PRO GLY TYR ARG SER HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 8 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 8 HET EDO A 408 4 HET SO4 A 409 5 HET SO4 A 410 5 HET 38Z A 411 44 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM 38Z (3R)-1-(2-OXO-2-{4-[4-(PYRIMIDIN-2-YL)PHENYL]PIPERAZIN- HETNAM 2 38Z 1-YL}ETHYL)-N-[3-(PYRIDIN-4-YL)-2H-INDAZOL-5- HETNAM 3 38Z YL]PYRROLIDINE-3-CARBOXAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 8(C2 H6 O2) FORMUL 10 SO4 2(O4 S 2-) FORMUL 12 38Z C33 H33 N9 O2 FORMUL 13 HOH *409(H2 O) HELIX 1 1 HIS A 61 PHE A 78 1 18 HELIX 2 2 LEU A 112 GLN A 119 1 8 HELIX 3 3 SER A 122 ALA A 143 1 22 HELIX 4 4 LYS A 151 SER A 153 5 3 HELIX 5 5 ALA A 195 ASN A 201 1 7 HELIX 6 6 LYS A 207 ASN A 224 1 18 HELIX 7 7 HIS A 232 GLY A 245 1 14 HELIX 8 8 SER A 248 CYS A 254 1 7 HELIX 9 9 ASN A 257 SER A 266 1 10 HELIX 10 10 PRO A 274 PHE A 279 1 6 HELIX 11 11 ASP A 283 LEU A 294 1 12 HELIX 12 12 GLU A 303 ALA A 309 1 7 HELIX 13 13 HIS A 310 GLU A 314 5 5 HELIX 14 14 ASP A 318 GLU A 322 5 5 HELIX 15 15 PRO A 339 ALA A 352 1 14 HELIX 16 16 ARG A 353 GLN A 355 5 3 SHEET 1 A 2 GLU A 12 VAL A 14 0 SHEET 2 A 2 GLN A 17 PHE A 19 -1 O PHE A 19 N GLU A 12 SHEET 1 B 5 TYR A 25 GLY A 34 0 SHEET 2 B 5 GLY A 37 ASP A 44 -1 O TYR A 43 N THR A 26 SHEET 3 B 5 VAL A 49 ILE A 56 -1 O VAL A 49 N ASP A 44 SHEET 4 B 5 VAL A 101 ASP A 106 -1 O GLN A 105 N ALA A 52 SHEET 5 B 5 ASP A 88 ILE A 90 -1 N ILE A 90 O TYR A 102 SHEET 1 C 3 THR A 110 ASP A 111 0 SHEET 2 C 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110 SHEET 3 C 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 D 2 VAL A 145 LEU A 146 0 SHEET 2 D 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 CISPEP 1 GLY A 22 PRO A 23 0 5.59 SITE 1 AC1 8 ARG A 91 ALA A 92 GLN A 97 MET A 98 SITE 2 AC1 8 LYS A 99 ASP A 100 EDO A 407 HOH A 811 SITE 1 AC2 8 VAL A 21 GLY A 22 PRO A 23 ARG A 24 SITE 2 AC2 8 ILE A 90 HOH A 520 HOH A 582 HOH A 662 SITE 1 AC3 4 ARG A 77 ARG A 225 GLU A 326 ALA A 327 SITE 1 AC4 7 ARG A 24 ASN A 47 ASN A 87 ASP A 88 SITE 2 AC4 7 PHE A 354 HOH A 536 HOH A 548 SITE 1 AC5 4 GLY A 34 ALA A 35 HOH A 672 HOH A 729 SITE 1 AC6 5 LYS A 138 PRO A 319 GLU A 322 GLU A 341 SITE 2 AC6 5 HOH A 770 SITE 1 AC7 8 ASP A 20 ILE A 90 TYR A 102 EDO A 401 SITE 2 AC7 8 HOH A 565 HOH A 671 HOH A 776 HOH A 812 SITE 1 AC8 5 ALA A 352 GLN A 355 PRO A 356 GLY A 357 SITE 2 AC8 5 HOH A 711 SITE 1 AC9 8 HIS A 61 GLN A 62 THR A 63 ASN A 123 SITE 2 AC9 8 HOH A 696 HOH A 755 HOH A 813 HOH A 833 SITE 1 BC1 6 ARG A 77 ARG A 225 LYS A 330 PHE A 331 SITE 2 BC1 6 HOH A 598 HOH A 863 SITE 1 BC2 23 ILE A 31 ALA A 35 TYR A 36 ALA A 52 SITE 2 BC2 23 LYS A 54 ILE A 56 TYR A 64 ARG A 67 SITE 3 BC2 23 THR A 68 GLU A 71 GLN A 105 ASP A 106 SITE 4 BC2 23 MET A 108 GLU A 109 THR A 110 LYS A 114 SITE 5 BC2 23 LEU A 156 CYS A 166 ASP A 167 HOH A 524 SITE 6 BC2 23 HOH A 546 HOH A 773 HOH A 781 CRYST1 42.820 75.540 103.590 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023354 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009653 0.00000