HEADER HYDROLASE INHIBITOR 08-JUL-14 4QTQ TITLE STRUCTURE OF A XANTHOMONAS TYPE IV SECRETION SYSTEM RELATED PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAC2610 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 GENE: XAC2610, XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS BETA-SANDWICH, CALCIUM BINDING MOTIF, BETA-PROPELLER FRAGMENT, KEYWDS 2 PEPTIDOGLYCAN HYDROLASE INHIBITOR, IMMUNITY PROTEIN XANTHOMONAS, KEYWDS 3 HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR D.P.SOUZA,C.R.GUZZO,C.S.FARAH REVDAT 2 09-OCT-24 4QTQ 1 REMARK SEQADV LINK REVDAT 1 17-JUN-15 4QTQ 0 JRNL AUTH D.P.SOUZA,G.U.OKA,C.E.ALVAREZ-MARTINEZ,A.W.BISSON-FILHO, JRNL AUTH 2 G.DUNGER,L.HOBEIKA,N.S.CAVALCANTE,M.C.ALEGRIA,L.R.BARBOSA, JRNL AUTH 3 R.K.SALINAS,C.R.GUZZO,C.S.FARAH JRNL TITL BACTERIAL KILLING VIA A TYPE IV SECRETION SYSTEM. JRNL REF NAT COMMUN V. 6 6453 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25743609 JRNL DOI 10.1038/NCOMMS7453 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 16066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 859 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1110 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3660 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.55000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.989 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1643 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1517 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2237 ; 1.186 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3525 ; 0.695 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 5.638 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;40.214 ;26.267 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 277 ;14.011 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;14.059 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1906 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 346 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 843 ; 1.644 ; 3.211 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 842 ; 1.645 ; 3.207 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1054 ; 2.840 ; 4.802 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1055 ; 2.840 ; 4.806 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 800 ; 1.507 ; 3.428 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 800 ; 1.503 ; 3.428 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1179 ; 2.549 ; 5.055 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1853 ; 7.572 ;27.110 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1792 ; 7.398 ;26.254 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9870 2.4790 6.9370 REMARK 3 T TENSOR REMARK 3 T11: 0.7246 T22: 0.1491 REMARK 3 T33: 0.2805 T12: -0.1857 REMARK 3 T13: 0.1725 T23: 0.0911 REMARK 3 L TENSOR REMARK 3 L11: 7.1844 L22: 0.8436 REMARK 3 L33: 4.3035 L12: -1.4016 REMARK 3 L13: 1.4813 L23: 1.2198 REMARK 3 S TENSOR REMARK 3 S11: -0.4388 S12: 0.3303 S13: 0.0089 REMARK 3 S21: 0.7003 S22: -0.1684 S23: 0.2324 REMARK 3 S31: 1.5442 S32: -0.2082 S33: 0.6073 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4280 9.4390 17.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.0919 REMARK 3 T33: 0.1428 T12: 0.0374 REMARK 3 T13: 0.0927 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.9553 L22: 11.0675 REMARK 3 L33: 17.6590 L12: 3.0807 REMARK 3 L13: 0.8746 L23: 9.9733 REMARK 3 S TENSOR REMARK 3 S11: -0.2057 S12: -0.0645 S13: -0.0256 REMARK 3 S21: 0.3973 S22: 0.1540 S23: 0.2894 REMARK 3 S31: 0.2012 S32: 0.5455 S33: 0.0517 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5650 16.3130 15.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.2238 REMARK 3 T33: 0.0990 T12: -0.0250 REMARK 3 T13: 0.0346 T23: 0.0707 REMARK 3 L TENSOR REMARK 3 L11: 2.0719 L22: 2.1649 REMARK 3 L33: 3.3921 L12: -1.4163 REMARK 3 L13: -2.6410 L23: 1.7886 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: -0.1529 S13: -0.1233 REMARK 3 S21: 0.1777 S22: -0.0468 S23: -0.1227 REMARK 3 S31: 0.1125 S32: 0.1284 S33: 0.1392 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 37.9540 12.1950 5.7550 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.1439 REMARK 3 T33: 0.1598 T12: -0.0266 REMARK 3 T13: 0.0241 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 3.4795 L22: 9.5706 REMARK 3 L33: 2.5159 L12: -4.4538 REMARK 3 L13: -2.6597 L23: 4.7641 REMARK 3 S TENSOR REMARK 3 S11: 0.1892 S12: -0.2627 S13: -0.1112 REMARK 3 S21: 0.0826 S22: -0.1369 S23: -0.2837 REMARK 3 S31: -0.0337 S32: 0.0163 S33: -0.0523 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 25.0800 13.0680 6.8220 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.0975 REMARK 3 T33: 0.1431 T12: -0.0211 REMARK 3 T13: 0.0392 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.6673 L22: 0.8211 REMARK 3 L33: 4.2596 L12: -0.7045 REMARK 3 L13: -0.6706 L23: 1.1668 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: -0.1735 S13: -0.0381 REMARK 3 S21: 0.0416 S22: 0.1319 S23: 0.0414 REMARK 3 S31: 0.2806 S32: -0.2420 S33: -0.0722 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3280 10.3160 1.6210 REMARK 3 T TENSOR REMARK 3 T11: 0.4992 T22: 0.4198 REMARK 3 T33: 0.5426 T12: -0.2280 REMARK 3 T13: -0.0488 T23: 0.1504 REMARK 3 L TENSOR REMARK 3 L11: 3.6560 L22: 3.2761 REMARK 3 L33: 28.3361 L12: 3.2543 REMARK 3 L13: 9.6909 L23: 9.6175 REMARK 3 S TENSOR REMARK 3 S11: -0.1308 S12: -0.3542 S13: 0.4881 REMARK 3 S21: 0.2735 S22: -0.6365 S23: 0.2625 REMARK 3 S31: 0.6884 S32: -1.7169 S33: 0.7673 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0620 9.2980 -2.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.2491 T22: 0.0546 REMARK 3 T33: 0.2844 T12: -0.0315 REMARK 3 T13: -0.0242 T23: 0.0584 REMARK 3 L TENSOR REMARK 3 L11: 4.0302 L22: 2.1078 REMARK 3 L33: 5.1165 L12: -0.1431 REMARK 3 L13: -2.6944 L23: 2.7218 REMARK 3 S TENSOR REMARK 3 S11: 0.2234 S12: 0.2458 S13: -0.3221 REMARK 3 S21: 0.1946 S22: -0.0092 S23: -0.2667 REMARK 3 S31: 0.1230 S32: -0.2040 S33: -0.2143 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7380 20.2100 2.3690 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1569 REMARK 3 T33: 0.1556 T12: -0.0120 REMARK 3 T13: 0.0334 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.8797 L22: 2.2675 REMARK 3 L33: 2.3582 L12: -2.4393 REMARK 3 L13: -1.7885 L23: 1.8009 REMARK 3 S TENSOR REMARK 3 S11: 0.0997 S12: 0.0360 S13: -0.0800 REMARK 3 S21: -0.0549 S22: -0.0852 S23: -0.0853 REMARK 3 S31: 0.0890 S32: -0.4338 S33: -0.0145 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5960 10.9910 -6.7250 REMARK 3 T TENSOR REMARK 3 T11: 0.3075 T22: 0.2457 REMARK 3 T33: 0.2668 T12: 0.0187 REMARK 3 T13: 0.0546 T23: -0.1737 REMARK 3 L TENSOR REMARK 3 L11: 14.5295 L22: 3.1997 REMARK 3 L33: 7.6770 L12: 6.8106 REMARK 3 L13: 10.5388 L23: 4.9532 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: 1.6715 S13: -1.1452 REMARK 3 S21: -0.0253 S22: 0.7881 S23: -0.5292 REMARK 3 S31: -0.0715 S32: 1.2002 S33: -0.8061 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6440 22.3710 -5.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.0516 REMARK 3 T33: 0.1621 T12: 0.0177 REMARK 3 T13: 0.0580 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 9.0654 L22: 1.4478 REMARK 3 L33: 2.6758 L12: -3.5910 REMARK 3 L13: 0.7062 L23: -0.0325 REMARK 3 S TENSOR REMARK 3 S11: 0.0892 S12: 0.0403 S13: 0.1627 REMARK 3 S21: -0.0572 S22: -0.0232 S23: -0.0871 REMARK 3 S31: -0.1032 S32: -0.0683 S33: -0.0660 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3930 16.5130 -7.4250 REMARK 3 T TENSOR REMARK 3 T11: 0.0789 T22: 0.0923 REMARK 3 T33: 0.0917 T12: -0.0433 REMARK 3 T13: 0.0036 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 3.9312 L22: 8.4192 REMARK 3 L33: 6.9756 L12: -4.6060 REMARK 3 L13: -1.4583 L23: 5.4301 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: 0.0128 S13: -0.2765 REMARK 3 S21: -0.0909 S22: -0.1200 S23: 0.3380 REMARK 3 S31: 0.1336 S32: -0.4284 S33: 0.0506 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 228 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3330 24.1340 -7.8300 REMARK 3 T TENSOR REMARK 3 T11: 0.1030 T22: 0.2717 REMARK 3 T33: 0.0516 T12: -0.0020 REMARK 3 T13: 0.0139 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 10.8852 L22: 2.5743 REMARK 3 L33: 5.6948 L12: -4.6307 REMARK 3 L13: -6.0238 L23: 3.6652 REMARK 3 S TENSOR REMARK 3 S11: 0.1580 S12: -0.5482 S13: -0.0176 REMARK 3 S21: -0.0298 S22: -0.0559 S23: -0.1020 REMARK 3 S31: 0.1345 S32: -0.2924 S33: -0.1021 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 229 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6670 18.4800 -15.6650 REMARK 3 T TENSOR REMARK 3 T11: 0.0625 T22: 0.2459 REMARK 3 T33: 0.0955 T12: 0.0130 REMARK 3 T13: 0.0482 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 11.3982 L22: 1.4866 REMARK 3 L33: 7.4781 L12: 2.8567 REMARK 3 L13: 1.7866 L23: 2.8027 REMARK 3 S TENSOR REMARK 3 S11: -0.2089 S12: 0.8820 S13: -0.3932 REMARK 3 S21: -0.1089 S22: 0.4542 S23: -0.1541 REMARK 3 S31: -0.2155 S32: 0.8714 S33: -0.2453 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5890 24.8880 -13.6670 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.3785 REMARK 3 T33: 0.0272 T12: -0.0051 REMARK 3 T13: 0.0438 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 21.5081 L22: 3.6967 REMARK 3 L33: 9.3414 L12: -7.4764 REMARK 3 L13: -12.5374 L23: 5.8314 REMARK 3 S TENSOR REMARK 3 S11: 0.2458 S12: 0.5405 S13: 0.2797 REMARK 3 S21: 0.0724 S22: -0.1980 S23: -0.0266 REMARK 3 S31: 0.0953 S32: -0.4680 S33: -0.0477 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 244 A 267 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7940 27.7190 -18.0580 REMARK 3 T TENSOR REMARK 3 T11: 0.1244 T22: 0.5316 REMARK 3 T33: 0.1481 T12: -0.0088 REMARK 3 T13: 0.0754 T23: -0.1650 REMARK 3 L TENSOR REMARK 3 L11: 22.3207 L22: 0.5081 REMARK 3 L33: 8.2603 L12: -1.9850 REMARK 3 L13: -11.7295 L23: 1.5723 REMARK 3 S TENSOR REMARK 3 S11: 0.1704 S12: 0.8079 S13: 0.5193 REMARK 3 S21: -0.0244 S22: 0.0335 S23: -0.1878 REMARK 3 S31: 0.0619 S32: -0.9789 S33: -0.2039 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QTQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX HF OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS-HCL PH 5.5, 200 MM REMARK 280 AMMONIUM SULPHATE AND 25% (W/V) PEG 3350, VAPOR DIFFUSION , REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.22850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.84750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.22850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.84750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 54 REMARK 465 GLN A 55 REMARK 465 LYS A 56 REMARK 465 ASP A 57 REMARK 465 LEU A 58 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 129 68.79 -160.74 REMARK 500 THR A 139 -70.41 -66.00 REMARK 500 CYS A 219 -91.86 -147.23 REMARK 500 ASN A 231 71.87 54.36 REMARK 500 ASN A 232 16.39 57.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 151 OD1 REMARK 620 2 ASN A 153 OD1 79.5 REMARK 620 3 ASP A 155 OD1 78.4 83.5 REMARK 620 4 HIS A 157 O 76.6 155.7 87.6 REMARK 620 5 ASP A 159 OD1 129.0 105.4 151.9 93.0 REMARK 620 6 ASP A 159 OD2 81.6 82.4 157.3 98.1 50.2 REMARK 620 7 HOH A 444 O 156.0 91.1 78.6 109.3 74.7 119.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 DBREF 4QTQ A 55 267 UNP Q8PJC5 Q8PJC5_XANAC 55 267 SEQADV 4QTQ MET A 54 UNP Q8PJC5 EXPRESSION TAG SEQRES 1 A 214 MET GLN LYS ASP LEU LYS MET PRO SER THR ALA ASN ALA SEQRES 2 A 214 LYS LEU ASN GLU GLN GLY GLU ILE SER ALA ASP ILE GLY SEQRES 3 A 214 GLY ILE ALA VAL SER VAL HIS ALA GLN SER CYS THR GLU SEQRES 4 A 214 ASP SER PRO GLY ILE MET LEU CYS ASN ARG SER PRO VAL SEQRES 5 A 214 VAL GLU VAL THR PHE PRO GLY ALA LYS PRO ILE ALA LEU SEQRES 6 A 214 GLU PRO GLU ALA LEU TYR VAL ASP SER ASN SER THR PHE SEQRES 7 A 214 TYR HIS GLY PRO LEU ASP ASP THR TYR LYS LYS ASN ARG SEQRES 8 A 214 HIS SER ILE ILE LEU THR ASP ILE ASN GLY ASP GLY HIS SEQRES 9 A 214 GLU ASP VAL VAL VAL TRP SER GLY LYS GLU GLY ASN TYR SEQRES 10 A 214 GLY GLY PRO SER TYR SER VAL TYR LEU PHE ASP ALA ALA SEQRES 11 A 214 GLN LYS THR LEU VAL PHE ASN GLN SER LEU SER ASP ILE SEQRES 12 A 214 THR VAL MET ALA ASN GLY LEU PHE SER VAL LYS GLY ASN SEQRES 13 A 214 MET LEU THR SER THR SER GLY ASP GLY CYS CYS ILE HIS SEQRES 14 A 214 VAL PHE ASP THR TYR GLU LEU LYS ASN ASN GLU ALA VAL SEQRES 15 A 214 LEU ILE GLU ARG LEU THR GLU ASP THR ASN ASP PRO ALA SEQRES 16 A 214 ASN PRO LYS LYS LYS ILE GLU ARG LEU GLN ASP GLY GLU SEQRES 17 A 214 MET LYS GLU VAL SER ASN HET CA A 301 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *180(H2 O) HELIX 1 1 GLY A 168 GLY A 172 5 5 HELIX 2 2 ASN A 190 THR A 197 1 8 SHEET 1 A 6 SER A 62 ALA A 64 0 SHEET 2 A 6 PHE A 131 HIS A 133 -1 O PHE A 131 N ALA A 64 SHEET 3 A 6 ILE A 147 THR A 150 1 O LEU A 149 N TYR A 132 SHEET 4 A 6 ASP A 159 GLY A 165 -1 O VAL A 161 N ILE A 148 SHEET 5 A 6 SER A 174 ASP A 181 -1 O TYR A 178 N VAL A 160 SHEET 6 A 6 THR A 186 PHE A 189 -1 O THR A 186 N ASP A 181 SHEET 1 B 4 GLU A 73 ILE A 78 0 SHEET 2 B 4 ILE A 81 HIS A 86 -1 O VAL A 83 N ALA A 76 SHEET 3 B 4 VAL A 105 THR A 109 -1 O THR A 109 N ALA A 82 SHEET 4 B 4 ILE A 116 LEU A 118 -1 O LEU A 118 N VAL A 106 SHEET 1 C 3 THR A 91 SER A 94 0 SHEET 2 C 3 ILE A 97 CYS A 100 -1 O LEU A 99 N THR A 91 SHEET 3 C 3 LEU A 123 ASP A 126 -1 O LEU A 123 N CYS A 100 SHEET 1 D 6 SER A 205 LYS A 207 0 SHEET 2 D 6 MET A 210 GLY A 216 -1 O MET A 210 N LYS A 207 SHEET 3 D 6 ILE A 221 LEU A 229 -1 O ASP A 225 N SER A 213 SHEET 4 D 6 ALA A 234 ASP A 243 -1 O GLU A 242 N HIS A 222 SHEET 5 D 6 LYS A 251 GLN A 258 -1 O LYS A 251 N ASP A 243 SHEET 6 D 6 GLU A 261 VAL A 265 -1 O LYS A 263 N ARG A 256 SSBOND 1 CYS A 90 CYS A 100 1555 1555 2.08 SSBOND 2 CYS A 219 CYS A 220 1555 2555 2.51 LINK OD1 ASP A 151 CA CA A 301 1555 1555 2.34 LINK OD1 ASN A 153 CA CA A 301 1555 1555 2.34 LINK OD1 ASP A 155 CA CA A 301 1555 1555 2.51 LINK O HIS A 157 CA CA A 301 1555 1555 2.36 LINK OD1 ASP A 159 CA CA A 301 1555 1555 2.57 LINK OD2 ASP A 159 CA CA A 301 1555 1555 2.62 LINK CA CA A 301 O HOH A 444 1555 1555 2.31 SITE 1 AC1 6 ASP A 151 ASN A 153 ASP A 155 HIS A 157 SITE 2 AC1 6 ASP A 159 HOH A 444 CRYST1 160.457 37.695 43.252 90.00 92.61 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006232 0.000000 0.000284 0.00000 SCALE2 0.000000 0.026529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023144 0.00000