HEADER TRANSFERASE 09-JUL-14 4QTT TITLE STRUCTURE OF S. CEREVISIAE BUD23-TRM112 COMPLEX INVOLVED IN FORMATION TITLE 2 OF M7G1575 ON 18S RRNA (APO-FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIFUNCTIONAL METHYLTRANSFERASE SUBUNIT TRM112; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: RRNA MTASE ACTIVATOR SUBUNIT, ERF1 METHYLTRANSFERASE SUBUNIT COMPND 5 TRM112, ERF1 MTASE SUBUNIT TRM112, TRNA METHYLTRANSFERASE 112; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PUTATIVE METHYLTRANSFERASE BUD23; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: FRAGMENT RESIDUES 1-202; COMPND 11 SYNONYM: RRNA MTASE CATALYTIC SUBUNIT, BUD SITE SELECTION PROTEIN 23; COMPND 12 EC: 2.1.1.-; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 GENE: N3445, TRM112, YNR046W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 10 ORGANISM_COMMON: YEAST; SOURCE 11 ORGANISM_TAXID: 559292; SOURCE 12 GENE: BUD23, YCR047C, YCR47C; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLASS I MTASE, METHYLTRANSFERASE, METHYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LETOQUART,E.HUVELLE,L.WACHEUL,G.BOURGEOIS,C.ZORBAS,M.GRAILLE, AUTHOR 2 V.HEURGUE-HAMARD,D.L.J.LAFONTAINE REVDAT 4 30-OCT-24 4QTT 1 REMARK REVDAT 3 24-AUG-22 4QTT 1 JRNL REMARK SEQADV LINK REVDAT 2 03-JAN-18 4QTT 1 TITLE REVDAT 1 24-DEC-14 4QTT 0 JRNL AUTH J.LETOQUART,E.HUVELLE,L.WACHEUL,G.BOURGEOIS,C.ZORBAS, JRNL AUTH 2 M.GRAILLE,V.HEURGUE-HAMARD,D.L.LAFONTAINE JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF BUD23-TRM112 REVEAL 18S JRNL TITL 2 RRNA N7-G1575 METHYLATION OCCURS ON LATE 40S PRECURSOR JRNL TITL 3 RIBOSOMES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E5518 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 25489090 JRNL DOI 10.1073/PNAS.1413089111 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 44585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0561 - 5.0369 0.99 2752 145 0.2014 0.2405 REMARK 3 2 5.0369 - 3.9995 1.00 2682 141 0.1587 0.2107 REMARK 3 3 3.9995 - 3.4944 1.00 2700 142 0.1707 0.2040 REMARK 3 4 3.4944 - 3.1751 1.00 2661 140 0.1903 0.2315 REMARK 3 5 3.1751 - 2.9476 1.00 2681 141 0.1951 0.2751 REMARK 3 6 2.9476 - 2.7739 1.00 2645 139 0.1927 0.2317 REMARK 3 7 2.7739 - 2.6350 1.00 2662 140 0.1956 0.2667 REMARK 3 8 2.6350 - 2.5203 1.00 2673 141 0.2040 0.2497 REMARK 3 9 2.5203 - 2.4233 1.00 2638 139 0.2114 0.2791 REMARK 3 10 2.4233 - 2.3397 1.00 2631 138 0.1970 0.2528 REMARK 3 11 2.3397 - 2.2666 1.00 2661 140 0.2109 0.2844 REMARK 3 12 2.2666 - 2.2018 0.99 2650 140 0.2165 0.2728 REMARK 3 13 2.2018 - 2.1438 1.00 2630 138 0.2189 0.2786 REMARK 3 14 2.1438 - 2.0915 1.00 2651 140 0.2324 0.3087 REMARK 3 15 2.0915 - 2.0440 1.00 2636 139 0.2344 0.2977 REMARK 3 16 2.0440 - 2.0005 0.91 2404 125 0.2571 0.3208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 67.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38910 REMARK 3 B22 (A**2) : -3.16230 REMARK 3 B33 (A**2) : 2.77320 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.82830 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4867 REMARK 3 ANGLE : 1.044 6577 REMARK 3 CHIRALITY : 0.071 745 REMARK 3 PLANARITY : 0.004 848 REMARK 3 DIHEDRAL : 17.689 1810 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-12; 14-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SOLEIL; SOLEIL REMARK 200 BEAMLINE : PROXIMA 1; PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801; 1.2822, 1.2828, 1.2757 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL; CHANNEL REMARK 200 CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M; PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44594 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.94000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 133 REMARK 465 LEU A 134 REMARK 465 VAL A 135 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 LEU B 7 REMARK 465 ALA B 8 REMARK 465 PRO B 9 REMARK 465 PRO B 10 REMARK 465 GLU B 11 REMARK 465 ILE B 12 REMARK 465 PHE B 13 REMARK 465 TYR B 14 REMARK 465 ASN B 15 REMARK 465 ASP B 16 REMARK 465 SER B 17 REMARK 465 GLU B 18 REMARK 465 ALA B 19 REMARK 465 HIS B 20 REMARK 465 ALA B 126 REMARK 465 ASP B 127 REMARK 465 THR B 128 REMARK 465 SER B 129 REMARK 465 TYR B 130 REMARK 465 ASN B 131 REMARK 465 GLY B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ARG D 3 REMARK 465 PRO D 4 REMARK 465 GLU D 5 REMARK 465 GLU D 6 REMARK 465 LEU D 7 REMARK 465 ALA D 8 REMARK 465 PRO D 9 REMARK 465 PRO D 10 REMARK 465 GLU D 11 REMARK 465 ILE D 12 REMARK 465 PHE D 13 REMARK 465 TYR D 14 REMARK 465 ASN D 15 REMARK 465 ASP D 16 REMARK 465 SER D 17 REMARK 465 GLU D 18 REMARK 465 ALA D 19 REMARK 465 HIS D 20 REMARK 465 LYS D 21 REMARK 465 TYR D 22 REMARK 465 THR D 23 REMARK 465 GLY D 24 REMARK 465 ASN D 125 REMARK 465 ALA D 126 REMARK 465 ASP D 127 REMARK 465 THR D 128 REMARK 465 SER D 129 REMARK 465 TYR D 130 REMARK 465 ASN D 131 REMARK 465 HIS D 203 REMARK 465 HIS D 204 REMARK 465 HIS D 205 REMARK 465 HIS D 206 REMARK 465 HIS D 207 REMARK 465 HIS D 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CSO B 124 OD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 55 O HOH B 402 2.16 REMARK 500 O HOH B 472 O HOH B 492 2.17 REMARK 500 O HOH A 369 O HOH B 494 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 70 37.24 -91.22 REMARK 500 PRO B 105 48.83 -83.67 REMARK 500 PHE C 8 -33.47 -131.50 REMARK 500 ALA D 119 -23.53 -142.18 REMARK 500 LYS D 161 -90.16 -86.24 REMARK 500 ASP D 186 54.38 37.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 12P B 305 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 16 SG 117.9 REMARK 620 3 CYS A 112 SG 101.0 117.1 REMARK 620 4 CYS A 115 SG 102.5 109.9 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 11 SG REMARK 620 2 CYS C 16 SG 122.3 REMARK 620 3 CYS C 112 SG 102.6 109.4 REMARK 620 4 CYS C 115 SG 105.1 107.8 109.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 12P B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QTM RELATED DB: PDB REMARK 900 RELATED ID: 4QTU RELATED DB: PDB DBREF 4QTT A 1 135 UNP P53738 TR112_YEAST 1 135 DBREF 4QTT B 1 202 UNP P25627 BUD23_YEAST 1 202 DBREF 4QTT C 1 135 UNP P53738 TR112_YEAST 1 135 DBREF 4QTT D 1 202 UNP P25627 BUD23_YEAST 1 202 SEQADV 4QTT HIS B 203 UNP P25627 EXPRESSION TAG SEQADV 4QTT HIS B 204 UNP P25627 EXPRESSION TAG SEQADV 4QTT HIS B 205 UNP P25627 EXPRESSION TAG SEQADV 4QTT HIS B 206 UNP P25627 EXPRESSION TAG SEQADV 4QTT HIS B 207 UNP P25627 EXPRESSION TAG SEQADV 4QTT HIS B 208 UNP P25627 EXPRESSION TAG SEQADV 4QTT HIS D 203 UNP P25627 EXPRESSION TAG SEQADV 4QTT HIS D 204 UNP P25627 EXPRESSION TAG SEQADV 4QTT HIS D 205 UNP P25627 EXPRESSION TAG SEQADV 4QTT HIS D 206 UNP P25627 EXPRESSION TAG SEQADV 4QTT HIS D 207 UNP P25627 EXPRESSION TAG SEQADV 4QTT HIS D 208 UNP P25627 EXPRESSION TAG SEQRES 1 A 135 MET LYS PHE LEU THR THR ASN PHE LEU LYS CYS SER VAL SEQRES 2 A 135 LYS ALA CYS ASP THR SER ASN ASP ASN PHE PRO LEU GLN SEQRES 3 A 135 TYR ASP GLY SER LYS CYS GLN LEU VAL GLN ASP GLU SER SEQRES 4 A 135 ILE GLU PHE ASN PRO GLU PHE LEU LEU ASN ILE VAL ASP SEQRES 5 A 135 ARG VAL ASP TRP PRO ALA VAL LEU THR VAL ALA ALA GLU SEQRES 6 A 135 LEU GLY ASN ASN ALA LEU PRO PRO THR LYS PRO SER PHE SEQRES 7 A 135 PRO SER SER ILE GLN GLU LEU THR ASP ASP ASP MET ALA SEQRES 8 A 135 ILE LEU ASN ASP LEU HIS THR LEU LEU LEU GLN THR SER SEQRES 9 A 135 ILE ALA GLU GLY GLU MET LYS CYS ARG ASN CYS GLY HIS SEQRES 10 A 135 ILE TYR TYR ILE LYS ASN GLY ILE PRO ASN LEU LEU LEU SEQRES 11 A 135 PRO PRO HIS LEU VAL SEQRES 1 B 208 MET SER ARG PRO GLU GLU LEU ALA PRO PRO GLU ILE PHE SEQRES 2 B 208 TYR ASN ASP SER GLU ALA HIS LYS TYR THR GLY SER THR SEQRES 3 B 208 ARG VAL GLN HIS ILE GLN ALA LYS MET THR LEU ARG ALA SEQRES 4 B 208 LEU GLU LEU LEU ASN LEU GLN PRO CYS SER PHE ILE LEU SEQRES 5 B 208 ASP ILE GLY CYS GLY SER GLY LEU SER GLY GLU ILE LEU SEQRES 6 B 208 THR GLN GLU GLY ASP HIS VAL TRP CYS GLY LEU ASP ILE SEQRES 7 B 208 SER PRO SER MET LEU ALA THR GLY LEU SER ARG GLU LEU SEQRES 8 B 208 GLU GLY ASP LEU MET LEU GLN ASP MET GLY THR GLY ILE SEQRES 9 B 208 PRO PHE ARG ALA GLY SER PHE ASP ALA ALA ILE SER ILE SEQRES 10 B 208 SER ALA ILE GLN TRP LEU CSO ASN ALA ASP THR SER TYR SEQRES 11 B 208 ASN ASP PRO LYS GLN ARG LEU MET ARG PHE PHE ASN THR SEQRES 12 B 208 LEU TYR ALA ALA LEU LYS LYS GLY GLY LYS PHE VAL ALA SEQRES 13 B 208 GLN PHE TYR PRO LYS ASN ASP ASP GLN VAL ASP ASP ILE SEQRES 14 B 208 LEU GLN SER ALA LYS VAL ALA GLY PHE SER GLY GLY LEU SEQRES 15 B 208 VAL VAL ASP ASP PRO GLU SER LYS LYS ASN LYS LYS TYR SEQRES 16 B 208 TYR LEU VAL LEU SER SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 135 MET LYS PHE LEU THR THR ASN PHE LEU LYS CYS SER VAL SEQRES 2 C 135 LYS ALA CYS ASP THR SER ASN ASP ASN PHE PRO LEU GLN SEQRES 3 C 135 TYR ASP GLY SER LYS CYS GLN LEU VAL GLN ASP GLU SER SEQRES 4 C 135 ILE GLU PHE ASN PRO GLU PHE LEU LEU ASN ILE VAL ASP SEQRES 5 C 135 ARG VAL ASP TRP PRO ALA VAL LEU THR VAL ALA ALA GLU SEQRES 6 C 135 LEU GLY ASN ASN ALA LEU PRO PRO THR LYS PRO SER PHE SEQRES 7 C 135 PRO SER SER ILE GLN GLU LEU THR ASP ASP ASP MET ALA SEQRES 8 C 135 ILE LEU ASN ASP LEU HIS THR LEU LEU LEU GLN THR SER SEQRES 9 C 135 ILE ALA GLU GLY GLU MET LYS CYS ARG ASN CYS GLY HIS SEQRES 10 C 135 ILE TYR TYR ILE LYS ASN GLY ILE PRO ASN LEU LEU LEU SEQRES 11 C 135 PRO PRO HIS LEU VAL SEQRES 1 D 208 MET SER ARG PRO GLU GLU LEU ALA PRO PRO GLU ILE PHE SEQRES 2 D 208 TYR ASN ASP SER GLU ALA HIS LYS TYR THR GLY SER THR SEQRES 3 D 208 ARG VAL GLN HIS ILE GLN ALA LYS MET THR LEU ARG ALA SEQRES 4 D 208 LEU GLU LEU LEU ASN LEU GLN PRO CYS SER PHE ILE LEU SEQRES 5 D 208 ASP ILE GLY CYS GLY SER GLY LEU SER GLY GLU ILE LEU SEQRES 6 D 208 THR GLN GLU GLY ASP HIS VAL TRP CYS GLY LEU ASP ILE SEQRES 7 D 208 SER PRO SER MET LEU ALA THR GLY LEU SER ARG GLU LEU SEQRES 8 D 208 GLU GLY ASP LEU MET LEU GLN ASP MET GLY THR GLY ILE SEQRES 9 D 208 PRO PHE ARG ALA GLY SER PHE ASP ALA ALA ILE SER ILE SEQRES 10 D 208 SER ALA ILE GLN TRP LEU CSO ASN ALA ASP THR SER TYR SEQRES 11 D 208 ASN ASP PRO LYS GLN ARG LEU MET ARG PHE PHE ASN THR SEQRES 12 D 208 LEU TYR ALA ALA LEU LYS LYS GLY GLY LYS PHE VAL ALA SEQRES 13 D 208 GLN PHE TYR PRO LYS ASN ASP ASP GLN VAL ASP ASP ILE SEQRES 14 D 208 LEU GLN SER ALA LYS VAL ALA GLY PHE SER GLY GLY LEU SEQRES 15 D 208 VAL VAL ASP ASP PRO GLU SER LYS LYS ASN LYS LYS TYR SEQRES 16 D 208 TYR LEU VAL LEU SER SER GLY HIS HIS HIS HIS HIS HIS MODRES 4QTT CSO B 124 CYS S-HYDROXYCYSTEINE MODRES 4QTT CSO D 124 CYS S-HYDROXYCYSTEINE HET CSO B 124 6 HET CSO D 124 7 HET ZN A 201 1 HET EDO B 301 4 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET 12P B 305 16 HET ZN C 201 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM 12P DODECAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN 12P POLYETHYLENE GLYCOL PEG400 FORMUL 2 CSO 2(C3 H7 N O3 S) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 10 12P C24 H50 O13 FORMUL 12 HOH *270(H2 O) HELIX 1 1 LYS A 2 ASN A 7 1 6 HELIX 2 2 VAL A 13 ASP A 17 5 5 HELIX 3 3 SER A 19 PHE A 23 5 5 HELIX 4 4 ASN A 43 VAL A 51 1 9 HELIX 5 5 ASP A 52 VAL A 54 5 3 HELIX 6 6 ASP A 55 LEU A 66 1 12 HELIX 7 7 SER A 81 LEU A 85 5 5 HELIX 8 8 THR A 86 LEU A 101 1 16 HELIX 9 9 GLY B 24 ASN B 44 1 21 HELIX 10 10 GLY B 59 ASP B 70 1 12 HELIX 11 11 SER B 79 SER B 88 1 10 HELIX 12 12 ASP B 99 GLY B 103 5 5 HELIX 13 13 ALA B 119 ASN B 125 5 7 HELIX 14 14 PRO B 133 ALA B 147 1 15 HELIX 15 15 ASN B 162 GLY B 177 1 16 HELIX 16 16 LYS C 2 ASN C 7 1 6 HELIX 17 17 VAL C 13 ASP C 17 5 5 HELIX 18 18 ASN C 43 VAL C 51 1 9 HELIX 19 19 ASP C 52 VAL C 54 5 3 HELIX 20 20 ASP C 55 LEU C 66 1 12 HELIX 21 21 SER C 81 LEU C 85 5 5 HELIX 22 22 THR C 86 LEU C 101 1 16 HELIX 23 23 PRO C 131 VAL C 135 5 5 HELIX 24 24 THR D 26 ASN D 44 1 19 HELIX 25 25 GLY D 59 ASP D 70 1 12 HELIX 26 26 SER D 79 ARG D 89 1 11 HELIX 27 27 ASP D 99 GLY D 103 5 5 HELIX 28 28 ALA D 119 CSO D 124 1 6 HELIX 29 29 PRO D 133 ALA D 147 1 15 HELIX 30 30 ASN D 162 GLY D 177 1 16 SHEET 1 A 3 GLN A 26 TYR A 27 0 SHEET 2 A 3 THR A 103 LYS A 111 -1 O LYS A 111 N GLN A 26 SHEET 3 A 3 GLN A 33 GLN A 36 -1 N GLN A 33 O GLU A 107 SHEET 1 B 4 GLN A 26 TYR A 27 0 SHEET 2 B 4 THR A 103 LYS A 111 -1 O LYS A 111 N GLN A 26 SHEET 3 B 4 ILE A 118 LYS A 122 -1 O TYR A 119 N MET A 110 SHEET 4 B 4 ILE A 125 ASN A 127 -1 O ASN A 127 N TYR A 120 SHEET 1 C14 ASP B 94 LEU B 97 0 SHEET 2 C14 VAL B 72 ASP B 77 1 N GLY B 75 O ASP B 94 SHEET 3 C14 PHE B 50 ILE B 54 1 N ASP B 53 O CYS B 74 SHEET 4 C14 PHE B 111 ILE B 117 1 O ILE B 115 N ILE B 54 SHEET 5 C14 LEU B 148 PHE B 158 1 O LYS B 149 N PHE B 111 SHEET 6 C14 LYS B 194 SER B 200 -1 O LEU B 197 N ALA B 156 SHEET 7 C14 SER B 179 ASP B 185 -1 N GLY B 181 O VAL B 198 SHEET 8 C14 SER D 179 ASP D 185 -1 O VAL D 184 N LEU B 182 SHEET 9 C14 LYS D 194 SER D 200 -1 O VAL D 198 N GLY D 181 SHEET 10 C14 LEU D 148 PHE D 158 -1 N ALA D 156 O LEU D 197 SHEET 11 C14 PHE D 111 ILE D 117 1 N PHE D 111 O LYS D 149 SHEET 12 C14 PHE D 50 ILE D 54 1 N ILE D 54 O ILE D 115 SHEET 13 C14 VAL D 72 ASP D 77 1 O CYS D 74 N ASP D 53 SHEET 14 C14 ASP D 94 LEU D 97 1 O ASP D 94 N GLY D 75 SHEET 1 D 3 GLN C 26 TYR C 27 0 SHEET 2 D 3 THR C 103 LYS C 111 -1 O LYS C 111 N GLN C 26 SHEET 3 D 3 GLN C 33 GLN C 36 -1 N GLN C 33 O GLU C 107 SHEET 1 E 4 GLN C 26 TYR C 27 0 SHEET 2 E 4 THR C 103 LYS C 111 -1 O LYS C 111 N GLN C 26 SHEET 3 E 4 ILE C 118 LYS C 122 -1 O TYR C 119 N MET C 110 SHEET 4 E 4 ILE C 125 ASN C 127 -1 O ASN C 127 N TYR C 120 LINK C LEU B 123 N CSO B 124 1555 1555 1.33 LINK C CSO B 124 N ASN B 125 1555 1555 1.33 LINK C LEU D 123 N CSO D 124 1555 1555 1.33 LINK SG CYS A 11 ZN ZN A 201 1555 1555 2.54 LINK SG CYS A 16 ZN ZN A 201 1555 1555 2.47 LINK SG CYS A 112 ZN ZN A 201 1555 1555 2.48 LINK SG CYS A 115 ZN ZN A 201 1555 1555 2.66 LINK SG CYS C 11 ZN ZN C 201 1555 1555 2.54 LINK SG CYS C 16 ZN ZN C 201 1555 1555 2.58 LINK SG CYS C 112 ZN ZN C 201 1555 1555 2.53 LINK SG CYS C 115 ZN ZN C 201 1555 1555 2.69 CISPEP 1 PHE A 23 PRO A 24 0 -4.99 CISPEP 2 PHE C 23 PRO C 24 0 -5.51 SITE 1 AC1 4 CYS A 11 CYS A 16 CYS A 112 CYS A 115 SITE 1 AC2 3 GLY B 93 LEU B 95 HOH B 488 SITE 1 AC3 7 GLN B 32 CYS B 56 GLY B 59 LEU B 60 SITE 2 AC3 7 SER B 61 ILE B 117 HOH B 402 SITE 1 AC4 4 GLU B 188 LEU D 170 PHE D 178 GLY D 180 SITE 1 AC5 5 LYS A 14 ARG B 139 ASN B 142 HOH B 438 SITE 2 AC5 5 HOH B 477 SITE 1 AC6 16 ARG B 38 LEU B 42 GLY B 181 LEU B 182 SITE 2 AC6 16 VAL B 183 VAL B 184 ASP B 185 HOH B 473 SITE 3 AC6 16 ARG D 38 GLY D 180 GLY D 181 LEU D 182 SITE 4 AC6 16 VAL D 183 VAL D 184 ASP D 185 VAL D 198 SITE 1 AC7 5 CYS C 11 VAL C 13 CYS C 16 CYS C 112 SITE 2 AC7 5 CYS C 115 CRYST1 74.420 53.880 83.760 90.00 95.32 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013437 0.000000 0.001251 0.00000 SCALE2 0.000000 0.018560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011991 0.00000