data_4QU6 # _entry.id 4QU6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4QU6 pdb_00004qu6 10.2210/pdb4qu6/pdb NDB NA3066 ? ? RCSB RCSB086517 ? ? WWPDB D_1000086517 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-421651 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4QU6 _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-07-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for T-Cell Biology (TCELL)' 2 # _citation.id primary _citation.title 'Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 1.75 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for T-Cell Biology (TCELL)' 2 ? # _cell.entry_id 4QU6 _cell.length_a 60.480 _cell.length_b 60.480 _cell.length_c 59.380 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4QU6 _symmetry.Int_Tables_number 94 _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'G-rich sequence factor 1' 12443.009 1 ? ? ? ? 2 polymer syn ;RNA 5'-(*AP*GP*GP*GP*UP*GP)-3' ; 1971.237 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 6 water nat water 18.015 85 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name GRSF-1 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMG QRYVEVYEINNEDVDALMKSLQVKSSP ; ;GSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMG QRYVEVYEINNEDVDALMKSLQVKSSP ; A JCSG-421651 2 polyribonucleotide no no AGGGUG AGGGUG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LYS n 1 4 LEU n 1 5 GLU n 1 6 GLU n 1 7 GLU n 1 8 VAL n 1 9 ASP n 1 10 ASP n 1 11 VAL n 1 12 PHE n 1 13 LEU n 1 14 ILE n 1 15 ARG n 1 16 ALA n 1 17 GLN n 1 18 GLY n 1 19 LEU n 1 20 PRO n 1 21 TRP n 1 22 SER n 1 23 CYS n 1 24 THR n 1 25 MET n 1 26 GLU n 1 27 ASP n 1 28 VAL n 1 29 LEU n 1 30 ASN n 1 31 PHE n 1 32 PHE n 1 33 SER n 1 34 ASP n 1 35 CYS n 1 36 ARG n 1 37 ILE n 1 38 ARG n 1 39 ASN n 1 40 GLY n 1 41 GLU n 1 42 ASN n 1 43 GLY n 1 44 ILE n 1 45 HIS n 1 46 PHE n 1 47 LEU n 1 48 LEU n 1 49 ASN n 1 50 ARG n 1 51 ASP n 1 52 GLY n 1 53 LYS n 1 54 ARG n 1 55 ARG n 1 56 GLY n 1 57 ASP n 1 58 ALA n 1 59 LEU n 1 60 ILE n 1 61 GLU n 1 62 MET n 1 63 GLU n 1 64 SER n 1 65 GLU n 1 66 GLN n 1 67 ASP n 1 68 VAL n 1 69 GLN n 1 70 LYS n 1 71 ALA n 1 72 LEU n 1 73 GLU n 1 74 LYS n 1 75 HIS n 1 76 ARG n 1 77 MET n 1 78 TYR n 1 79 MET n 1 80 GLY n 1 81 GLN n 1 82 ARG n 1 83 TYR n 1 84 VAL n 1 85 GLU n 1 86 VAL n 1 87 TYR n 1 88 GLU n 1 89 ILE n 1 90 ASN n 1 91 ASN n 1 92 GLU n 1 93 ASP n 1 94 VAL n 1 95 ASP n 1 96 ALA n 1 97 LEU n 1 98 MET n 1 99 LYS n 1 100 SER n 1 101 LEU n 1 102 GLN n 1 103 VAL n 1 104 LYS n 1 105 SER n 1 106 SER n 1 107 PRO n 2 1 A n 2 2 G n 2 3 G n 2 4 G n 2 5 U n 2 6 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC040485, GRSF1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedE6T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GRSF1_HUMAN Q12849 1 ;SKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQ RYVEVYEINNEDVDALMKSLQVKSSP ; 140 ? 2 PDB 4QU6 4QU6 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4QU6 A 2 ? 107 ? Q12849 140 ? 245 ? 140 245 2 2 4QU6 B 1 ? 6 ? 4QU6 801 ? 806 ? 801 806 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4QU6 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q12849 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4QU6 # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.88 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 34.70 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.2M calcium chloride 20.0% polyethylene glycol 3350, 1 mM AGGGUG, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2013-06-06 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4QU6 _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 42.766 _reflns.number_obs 11466 _reflns.pdbx_Rmerge_I_obs 0.105 _reflns.pdbx_netI_over_sigmaI 17.730 _reflns.percent_possible_obs 98.700 _reflns.B_iso_Wilson_estimate 22.802 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.750 1.800 5865 ? 738 ? 0.014 1.6 ? ? ? ? ? 838 ? ? 0.664 ? ? 88.100 1.451 ? 1 1 1.800 1.840 7445 ? 787 ? 0.014 2.4 ? ? ? ? ? 821 ? ? 0.812 ? ? 95.900 1.067 ? 2 1 1.840 1.900 9559 ? 790 ? 0.014 3.2 ? ? ? ? ? 799 ? ? 0.890 ? ? 98.900 0.947 ? 3 1 1.900 1.960 10136 ? 769 ? 0.014 4.8 ? ? ? ? ? 769 ? ? 0.938 ? ? 100.000 0.675 ? 4 1 1.960 2.020 9759 ? 752 ? 0.014 6.2 ? ? ? ? ? 753 ? ? 0.973 ? ? 99.900 0.502 ? 5 1 2.020 2.090 9272 ? 728 ? 0.014 7.7 ? ? ? ? ? 729 ? ? 0.978 ? ? 99.900 0.404 ? 6 1 2.090 2.170 8492 ? 704 ? 0.014 8.5 ? ? ? ? ? 705 ? ? 0.975 ? ? 99.900 0.347 ? 7 1 2.170 2.260 8862 ? 671 ? 0.014 11.1 ? ? ? ? ? 672 ? ? 0.987 ? ? 99.900 0.276 ? 8 1 2.260 2.360 8627 ? 661 ? 0.014 12.6 ? ? ? ? ? 661 ? ? 0.995 ? ? 100.000 0.234 ? 9 1 2.360 2.480 7952 ? 620 ? 0.014 13.6 ? ? ? ? ? 620 ? ? 0.992 ? ? 100.000 0.219 ? 10 1 2.480 2.610 7251 ? 604 ? 0.014 16.7 ? ? ? ? ? 604 ? ? 0.994 ? ? 100.000 0.168 ? 11 1 2.610 2.770 7278 ? 564 ? 0.014 19.1 ? ? ? ? ? 564 ? ? 0.997 ? ? 100.000 0.147 ? 12 1 2.770 2.960 7026 ? 539 ? 0.014 24.4 ? ? ? ? ? 539 ? ? 0.998 ? ? 100.000 0.109 ? 13 1 2.960 3.200 6393 ? 504 ? 0.014 32.9 ? ? ? ? ? 504 ? ? 0.999 ? ? 100.000 0.073 ? 14 1 3.200 3.500 5468 ? 462 ? 0.014 40.3 ? ? ? ? ? 463 ? ? 0.999 ? ? 99.800 0.056 ? 15 1 3.500 3.910 5560 ? 431 ? 0.014 51.6 ? ? ? ? ? 431 ? ? 1.000 ? ? 100.000 0.042 ? 16 1 3.910 4.520 4789 ? 384 ? 0.014 54.8 ? ? ? ? ? 384 ? ? 0.999 ? ? 100.000 0.038 ? 17 1 4.520 5.530 3719 ? 328 ? 0.014 51.8 ? ? ? ? ? 330 ? ? 0.999 ? ? 99.400 0.041 ? 18 1 5.530 7.830 3157 ? 267 ? 0.014 51.6 ? ? ? ? ? 268 ? ? 0.999 ? ? 99.600 0.044 ? 19 1 7.830 ? 1594 ? 163 ? 0.014 63.2 ? ? ? ? ? 165 ? ? 1.000 ? ? 98.800 0.030 ? 20 1 # _refine.entry_id 4QU6 _refine.ls_d_res_high 1.7500 _refine.ls_d_res_low 42.766 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.5800 _refine.ls_number_reflns_obs 11465 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 4. EDO, CALCIUM AND CL MOLECULES FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. 5. RNA MOLECULE SITS ON 2-FOLD AXIS WITH HALF OCCUPANCY. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1855 _refine.ls_R_factor_R_work 0.1826 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2464 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 546 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.5744 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.1900 _refine.aniso_B[2][2] -1.1900 _refine.aniso_B[3][3] 2.3900 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9640 _refine.correlation_coeff_Fo_to_Fc_free 0.9150 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1240 _refine.pdbx_overall_ESU_R_Free 0.1330 _refine.overall_SU_ML 0.0940 _refine.overall_SU_B 6.1260 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 2DB1 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 80.210 _refine.B_iso_min 14.210 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 805 _refine_hist.pdbx_number_atoms_nucleic_acid 69 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 971 _refine_hist.d_res_high 1.7500 _refine_hist.d_res_low 42.766 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 932 0.012 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 844 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1271 1.548 1.887 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1942 0.846 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 108 5.946 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 50 34.890 24.400 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 162 13.020 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 9 13.984 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 133 0.092 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1038 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 227 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 405 1.501 1.880 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 404 1.502 1.875 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 507 2.381 2.805 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.7500 _refine_ls_shell.d_res_low 1.7960 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 87.8900 _refine_ls_shell.number_reflns_R_work 704 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3060 _refine_ls_shell.R_factor_R_free 0.3130 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 733 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4QU6 _struct.title 'Crystal structure of a G-rich RNA sequence binding factor 1 (GRSF1) from Homo sapiens at 1.75 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;RNA binding domain, RRM_6, PF14259 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, RNA-BINDING PROTEIN, RNA Binding Protein-RNA complex, Partnership for T-Cell Biology, TCELL ; _struct_keywords.pdbx_keywords 'RNA Binding Protein/RNA' _struct_keywords.entry_id 4QU6 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 24 ? PHE A 32 ? THR A 162 PHE A 170 1 ? 9 HELX_P HELX_P2 2 ASN A 39 ? ASN A 42 ? ASN A 177 ASN A 180 5 ? 4 HELX_P HELX_P3 3 SER A 64 ? GLU A 73 ? SER A 202 GLU A 211 1 ? 10 HELX_P HELX_P4 4 ASN A 91 ? SER A 105 ? ASN A 229 SER A 243 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 9 OD2 ? ? ? 1_555 F CA . CA ? ? A ASP 147 A CA 904 1_555 ? ? ? ? ? ? ? 2.354 ? ? metalc2 metalc ? ? A ASP 9 OD1 ? ? ? 1_555 F CA . CA ? ? A ASP 147 A CA 904 1_555 ? ? ? ? ? ? ? 3.186 ? ? metalc3 metalc ? ? A VAL 11 O ? ? ? 1_555 F CA . CA ? ? A VAL 149 A CA 904 1_555 ? ? ? ? ? ? ? 2.439 ? ? metalc4 metalc ? ? A ASP 95 OD2 ? ? ? 1_555 F CA . CA ? ? A ASP 233 A CA 904 1_555 ? ? ? ? ? ? ? 2.544 ? ? metalc5 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 904 A HOH 1009 1_555 ? ? ? ? ? ? ? 2.354 ? ? metalc6 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 904 A HOH 1043 1_555 ? ? ? ? ? ? ? 2.219 ? ? metalc7 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 904 A HOH 1083 1_555 ? ? ? ? ? ? ? 2.256 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 44 ? LEU A 48 ? ILE A 182 LEU A 186 A 2 ARG A 54 ? MET A 62 ? ARG A 192 MET A 200 A 3 PHE A 12 ? GLN A 17 ? PHE A 150 GLN A 155 A 4 ARG A 82 ? GLU A 88 ? ARG A 220 GLU A 226 A 5 MET A 77 ? MET A 79 ? MET A 215 MET A 217 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 47 ? N LEU A 185 O ARG A 55 ? O ARG A 193 A 2 3 O MET A 62 ? O MET A 200 N PHE A 12 ? N PHE A 150 A 3 4 N ARG A 15 ? N ARG A 153 O TYR A 87 ? O TYR A 225 A 4 5 O VAL A 84 ? O VAL A 222 N MET A 77 ? N MET A 215 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 901 ? 5 'BINDING SITE FOR RESIDUE CL A 901' AC2 Software A CL 902 ? 1 'BINDING SITE FOR RESIDUE CL A 902' AC3 Software A CL 903 ? 1 'BINDING SITE FOR RESIDUE CL A 903' AC4 Software A CA 904 ? 6 'BINDING SITE FOR RESIDUE CA A 904' AC5 Software A EDO 905 ? 4 'BINDING SITE FOR RESIDUE EDO A 905' AC6 Software A EDO 906 ? 6 'BINDING SITE FOR RESIDUE EDO A 906' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ILE A 44 ? ILE A 182 . ? 1_555 ? 2 AC1 5 HIS A 45 ? HIS A 183 . ? 1_555 ? 3 AC1 5 PHE A 46 ? PHE A 184 . ? 1_555 ? 4 AC1 5 SER A 100 ? SER A 238 . ? 2_655 ? 5 AC1 5 HOH I . ? HOH A 1032 . ? 2_655 ? 6 AC2 1 GLN A 81 ? GLN A 219 . ? 1_555 ? 7 AC3 1 GLU A 92 ? GLU A 230 . ? 1_555 ? 8 AC4 6 ASP A 9 ? ASP A 147 . ? 1_555 ? 9 AC4 6 VAL A 11 ? VAL A 149 . ? 1_555 ? 10 AC4 6 ASP A 95 ? ASP A 233 . ? 1_555 ? 11 AC4 6 HOH I . ? HOH A 1009 . ? 1_555 ? 12 AC4 6 HOH I . ? HOH A 1043 . ? 1_555 ? 13 AC4 6 HOH I . ? HOH A 1083 . ? 1_555 ? 14 AC5 4 PHE A 31 ? PHE A 169 . ? 1_555 ? 15 AC5 4 LYS A 74 ? LYS A 212 . ? 1_555 ? 16 AC5 4 GLN A 81 ? GLN A 219 . ? 2_555 ? 17 AC5 4 HOH I . ? HOH A 1082 . ? 1_555 ? 18 AC6 6 ARG A 38 ? ARG A 176 . ? 1_555 ? 19 AC6 6 GLU A 61 ? GLU A 199 . ? 1_555 ? 20 AC6 6 MET A 98 ? MET A 236 . ? 1_555 ? 21 AC6 6 LEU A 101 ? LEU A 239 . ? 1_555 ? 22 AC6 6 GLN A 102 ? GLN A 240 . ? 1_555 ? 23 AC6 6 SER A 105 ? SER A 243 . ? 1_555 ? # _atom_sites.entry_id 4QU6 _atom_sites.fract_transf_matrix[1][1] 0.016534 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016534 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016841 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA CL N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 SER 2 140 ? ? ? A . n A 1 3 LYS 3 141 ? ? ? A . n A 1 4 LEU 4 142 ? ? ? A . n A 1 5 GLU 5 143 ? ? ? A . n A 1 6 GLU 6 144 ? ? ? A . n A 1 7 GLU 7 145 ? ? ? A . n A 1 8 VAL 8 146 ? ? ? A . n A 1 9 ASP 9 147 147 ASP ASP A . n A 1 10 ASP 10 148 148 ASP ASP A . n A 1 11 VAL 11 149 149 VAL VAL A . n A 1 12 PHE 12 150 150 PHE PHE A . n A 1 13 LEU 13 151 151 LEU LEU A . n A 1 14 ILE 14 152 152 ILE ILE A . n A 1 15 ARG 15 153 153 ARG ARG A . n A 1 16 ALA 16 154 154 ALA ALA A . n A 1 17 GLN 17 155 155 GLN GLN A . n A 1 18 GLY 18 156 156 GLY GLY A . n A 1 19 LEU 19 157 157 LEU LEU A . n A 1 20 PRO 20 158 158 PRO PRO A . n A 1 21 TRP 21 159 159 TRP TRP A . n A 1 22 SER 22 160 160 SER SER A . n A 1 23 CYS 23 161 161 CYS CYS A . n A 1 24 THR 24 162 162 THR THR A . n A 1 25 MET 25 163 163 MET MET A . n A 1 26 GLU 26 164 164 GLU GLU A . n A 1 27 ASP 27 165 165 ASP ASP A . n A 1 28 VAL 28 166 166 VAL VAL A . n A 1 29 LEU 29 167 167 LEU LEU A . n A 1 30 ASN 30 168 168 ASN ASN A . n A 1 31 PHE 31 169 169 PHE PHE A . n A 1 32 PHE 32 170 170 PHE PHE A . n A 1 33 SER 33 171 171 SER SER A . n A 1 34 ASP 34 172 172 ASP ASP A . n A 1 35 CYS 35 173 173 CYS CYS A . n A 1 36 ARG 36 174 174 ARG ARG A . n A 1 37 ILE 37 175 175 ILE ILE A . n A 1 38 ARG 38 176 176 ARG ARG A . n A 1 39 ASN 39 177 177 ASN ASN A . n A 1 40 GLY 40 178 178 GLY GLY A . n A 1 41 GLU 41 179 179 GLU GLU A . n A 1 42 ASN 42 180 180 ASN ASN A . n A 1 43 GLY 43 181 181 GLY GLY A . n A 1 44 ILE 44 182 182 ILE ILE A . n A 1 45 HIS 45 183 183 HIS HIS A . n A 1 46 PHE 46 184 184 PHE PHE A . n A 1 47 LEU 47 185 185 LEU LEU A . n A 1 48 LEU 48 186 186 LEU LEU A . n A 1 49 ASN 49 187 187 ASN ASN A . n A 1 50 ARG 50 188 188 ARG ARG A . n A 1 51 ASP 51 189 189 ASP ASP A . n A 1 52 GLY 52 190 190 GLY GLY A . n A 1 53 LYS 53 191 191 LYS LYS A . n A 1 54 ARG 54 192 192 ARG ARG A . n A 1 55 ARG 55 193 193 ARG ARG A . n A 1 56 GLY 56 194 194 GLY GLY A . n A 1 57 ASP 57 195 195 ASP ASP A . n A 1 58 ALA 58 196 196 ALA ALA A . n A 1 59 LEU 59 197 197 LEU LEU A . n A 1 60 ILE 60 198 198 ILE ILE A . n A 1 61 GLU 61 199 199 GLU GLU A . n A 1 62 MET 62 200 200 MET MET A . n A 1 63 GLU 63 201 201 GLU GLU A . n A 1 64 SER 64 202 202 SER SER A . n A 1 65 GLU 65 203 203 GLU GLU A . n A 1 66 GLN 66 204 204 GLN GLN A . n A 1 67 ASP 67 205 205 ASP ASP A . n A 1 68 VAL 68 206 206 VAL VAL A . n A 1 69 GLN 69 207 207 GLN GLN A . n A 1 70 LYS 70 208 208 LYS LYS A . n A 1 71 ALA 71 209 209 ALA ALA A . n A 1 72 LEU 72 210 210 LEU LEU A . n A 1 73 GLU 73 211 211 GLU GLU A . n A 1 74 LYS 74 212 212 LYS LYS A . n A 1 75 HIS 75 213 213 HIS HIS A . n A 1 76 ARG 76 214 214 ARG ARG A . n A 1 77 MET 77 215 215 MET MET A . n A 1 78 TYR 78 216 216 TYR TYR A . n A 1 79 MET 79 217 217 MET MET A . n A 1 80 GLY 80 218 218 GLY GLY A . n A 1 81 GLN 81 219 219 GLN GLN A . n A 1 82 ARG 82 220 220 ARG ARG A . n A 1 83 TYR 83 221 221 TYR TYR A . n A 1 84 VAL 84 222 222 VAL VAL A . n A 1 85 GLU 85 223 223 GLU GLU A . n A 1 86 VAL 86 224 224 VAL VAL A . n A 1 87 TYR 87 225 225 TYR TYR A . n A 1 88 GLU 88 226 226 GLU GLU A . n A 1 89 ILE 89 227 227 ILE ILE A . n A 1 90 ASN 90 228 228 ASN ASN A . n A 1 91 ASN 91 229 229 ASN ASN A . n A 1 92 GLU 92 230 230 GLU GLU A . n A 1 93 ASP 93 231 231 ASP ASP A . n A 1 94 VAL 94 232 232 VAL VAL A . n A 1 95 ASP 95 233 233 ASP ASP A . n A 1 96 ALA 96 234 234 ALA ALA A . n A 1 97 LEU 97 235 235 LEU LEU A . n A 1 98 MET 98 236 236 MET MET A . n A 1 99 LYS 99 237 237 LYS LYS A . n A 1 100 SER 100 238 238 SER SER A . n A 1 101 LEU 101 239 239 LEU LEU A . n A 1 102 GLN 102 240 240 GLN GLN A . n A 1 103 VAL 103 241 241 VAL VAL A . n A 1 104 LYS 104 242 242 LYS LYS A . n A 1 105 SER 105 243 243 SER SER A . n A 1 106 SER 106 244 244 SER SER A . n A 1 107 PRO 107 245 245 PRO PRO A . n B 2 1 A 1 801 ? ? ? B . n B 2 2 G 2 802 802 G G B . n B 2 3 G 3 803 803 G G B . n B 2 4 G 4 804 804 G G B . n B 2 5 U 5 805 ? ? ? B . n B 2 6 G 6 806 ? ? ? B . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for T-Cell Biology' 2 TCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL 1 901 901 CL CL A . D 3 CL 1 902 902 CL CL A . E 3 CL 1 903 903 CL CL A . F 4 CA 1 904 904 CA CA A . G 5 EDO 1 905 905 EDO EDO A . H 5 EDO 1 906 906 EDO EDO A . I 6 HOH 1 1001 907 HOH HOH A . I 6 HOH 2 1002 908 HOH HOH A . I 6 HOH 3 1003 909 HOH HOH A . I 6 HOH 4 1004 910 HOH HOH A . I 6 HOH 5 1005 911 HOH HOH A . I 6 HOH 6 1006 912 HOH HOH A . I 6 HOH 7 1007 913 HOH HOH A . I 6 HOH 8 1008 914 HOH HOH A . I 6 HOH 9 1009 915 HOH HOH A . I 6 HOH 10 1010 916 HOH HOH A . I 6 HOH 11 1011 917 HOH HOH A . I 6 HOH 12 1012 918 HOH HOH A . I 6 HOH 13 1013 919 HOH HOH A . I 6 HOH 14 1014 920 HOH HOH A . I 6 HOH 15 1015 921 HOH HOH A . I 6 HOH 16 1016 922 HOH HOH A . I 6 HOH 17 1017 923 HOH HOH A . I 6 HOH 18 1018 924 HOH HOH A . I 6 HOH 19 1019 925 HOH HOH A . I 6 HOH 20 1020 926 HOH HOH A . I 6 HOH 21 1021 927 HOH HOH A . I 6 HOH 22 1022 928 HOH HOH A . I 6 HOH 23 1023 929 HOH HOH A . I 6 HOH 24 1024 930 HOH HOH A . I 6 HOH 25 1025 931 HOH HOH A . I 6 HOH 26 1026 932 HOH HOH A . I 6 HOH 27 1027 933 HOH HOH A . I 6 HOH 28 1028 934 HOH HOH A . I 6 HOH 29 1029 935 HOH HOH A . I 6 HOH 30 1030 937 HOH HOH A . I 6 HOH 31 1031 938 HOH HOH A . I 6 HOH 32 1032 939 HOH HOH A . I 6 HOH 33 1033 940 HOH HOH A . I 6 HOH 34 1034 941 HOH HOH A . I 6 HOH 35 1035 942 HOH HOH A . I 6 HOH 36 1036 943 HOH HOH A . I 6 HOH 37 1037 944 HOH HOH A . I 6 HOH 38 1038 945 HOH HOH A . I 6 HOH 39 1039 946 HOH HOH A . I 6 HOH 40 1040 947 HOH HOH A . I 6 HOH 41 1041 948 HOH HOH A . I 6 HOH 42 1042 949 HOH HOH A . I 6 HOH 43 1043 950 HOH HOH A . I 6 HOH 44 1044 951 HOH HOH A . I 6 HOH 45 1045 952 HOH HOH A . I 6 HOH 46 1046 953 HOH HOH A . I 6 HOH 47 1047 954 HOH HOH A . I 6 HOH 48 1048 955 HOH HOH A . I 6 HOH 49 1049 957 HOH HOH A . I 6 HOH 50 1050 958 HOH HOH A . I 6 HOH 51 1051 959 HOH HOH A . I 6 HOH 52 1052 960 HOH HOH A . I 6 HOH 53 1053 961 HOH HOH A . I 6 HOH 54 1054 962 HOH HOH A . I 6 HOH 55 1055 963 HOH HOH A . I 6 HOH 56 1056 964 HOH HOH A . I 6 HOH 57 1057 965 HOH HOH A . I 6 HOH 58 1058 966 HOH HOH A . I 6 HOH 59 1059 967 HOH HOH A . I 6 HOH 60 1060 968 HOH HOH A . I 6 HOH 61 1061 969 HOH HOH A . I 6 HOH 62 1062 970 HOH HOH A . I 6 HOH 63 1063 971 HOH HOH A . I 6 HOH 64 1064 972 HOH HOH A . I 6 HOH 65 1065 973 HOH HOH A . I 6 HOH 66 1066 974 HOH HOH A . I 6 HOH 67 1067 975 HOH HOH A . I 6 HOH 68 1068 976 HOH HOH A . I 6 HOH 69 1069 977 HOH HOH A . I 6 HOH 70 1070 978 HOH HOH A . I 6 HOH 71 1071 979 HOH HOH A . I 6 HOH 72 1072 980 HOH HOH A . I 6 HOH 73 1073 981 HOH HOH A . I 6 HOH 74 1074 982 HOH HOH A . I 6 HOH 75 1075 983 HOH HOH A . I 6 HOH 76 1076 984 HOH HOH A . I 6 HOH 77 1077 985 HOH HOH A . I 6 HOH 78 1078 986 HOH HOH A . I 6 HOH 79 1079 987 HOH HOH A . I 6 HOH 80 1080 988 HOH HOH A . I 6 HOH 81 1081 989 HOH HOH A . I 6 HOH 82 1082 990 HOH HOH A . I 6 HOH 83 1083 991 HOH HOH A . J 6 HOH 1 901 936 HOH HOH B . J 6 HOH 2 902 956 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3600 ? 2 MORE -79 ? 2 'SSA (A^2)' 10850 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 60.4800000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 1003 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 9 ? A ASP 147 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 OD1 ? A ASP 9 ? A ASP 147 ? 1_555 42.9 ? 2 OD2 ? A ASP 9 ? A ASP 147 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? A VAL 11 ? A VAL 149 ? 1_555 71.8 ? 3 OD1 ? A ASP 9 ? A ASP 147 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? A VAL 11 ? A VAL 149 ? 1_555 89.4 ? 4 OD2 ? A ASP 9 ? A ASP 147 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 OD2 ? A ASP 95 ? A ASP 233 ? 1_555 101.1 ? 5 OD1 ? A ASP 9 ? A ASP 147 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 OD2 ? A ASP 95 ? A ASP 233 ? 1_555 58.3 ? 6 O ? A VAL 11 ? A VAL 149 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 OD2 ? A ASP 95 ? A ASP 233 ? 1_555 107.4 ? 7 OD2 ? A ASP 9 ? A ASP 147 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1009 ? 1_555 152.0 ? 8 OD1 ? A ASP 9 ? A ASP 147 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1009 ? 1_555 140.1 ? 9 O ? A VAL 11 ? A VAL 149 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1009 ? 1_555 80.3 ? 10 OD2 ? A ASP 95 ? A ASP 233 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1009 ? 1_555 88.0 ? 11 OD2 ? A ASP 9 ? A ASP 147 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1043 ? 1_555 73.4 ? 12 OD1 ? A ASP 9 ? A ASP 147 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1043 ? 1_555 116.0 ? 13 O ? A VAL 11 ? A VAL 149 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1043 ? 1_555 73.0 ? 14 OD2 ? A ASP 95 ? A ASP 233 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1043 ? 1_555 174.2 ? 15 O ? I HOH . ? A HOH 1009 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1043 ? 1_555 97.7 ? 16 OD2 ? A ASP 9 ? A ASP 147 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1083 ? 1_555 125.9 ? 17 OD1 ? A ASP 9 ? A ASP 147 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1083 ? 1_555 114.4 ? 18 O ? A VAL 11 ? A VAL 149 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1083 ? 1_555 156.1 ? 19 OD2 ? A ASP 95 ? A ASP 233 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1083 ? 1_555 86.2 ? 20 O ? I HOH . ? A HOH 1009 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1083 ? 1_555 80.7 ? 21 O ? I HOH . ? A HOH 1043 ? 1_555 CA ? F CA . ? A CA 904 ? 1_555 O ? I HOH . ? A HOH 1083 ? 1_555 95.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-08-13 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2023-02-01 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_struct_conn_angle 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.value' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 30 3 'Structure model' '_struct_ref_seq_dif.details' 31 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 18.2816 _pdbx_refine_tls.origin_y 3.3933 _pdbx_refine_tls.origin_z 19.1628 _pdbx_refine_tls.T[1][1] 0.0177 _pdbx_refine_tls.T[2][2] 0.0134 _pdbx_refine_tls.T[3][3] 0.0426 _pdbx_refine_tls.T[1][2] -0.0004 _pdbx_refine_tls.T[1][3] 0.0112 _pdbx_refine_tls.T[2][3] 0.0087 _pdbx_refine_tls.L[1][1] 2.2869 _pdbx_refine_tls.L[2][2] 0.4009 _pdbx_refine_tls.L[3][3] 0.6509 _pdbx_refine_tls.L[1][2] -0.3710 _pdbx_refine_tls.L[1][3] 0.0487 _pdbx_refine_tls.L[2][3] 0.0413 _pdbx_refine_tls.S[1][1] 0.0231 _pdbx_refine_tls.S[2][2] -0.0316 _pdbx_refine_tls.S[3][3] 0.0085 _pdbx_refine_tls.S[1][2] 0.0644 _pdbx_refine_tls.S[1][3] 0.1278 _pdbx_refine_tls.S[2][3] -0.0289 _pdbx_refine_tls.S[2][1] -0.0415 _pdbx_refine_tls.S[3][1] -0.0277 _pdbx_refine_tls.S[3][2] 0.0339 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 147 A 245 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 B 802 B 804 ? . . . . ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MOLREP . ? ? ? ? phasing ? ? ? 4 XSCALE 'July 4, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # _pdbx_entry_details.entry_id 4QU6 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 140-245 OF THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 220 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 220 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 220 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.45 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 4.15 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 170 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -102.05 _pdbx_validate_torsion.psi 41.92 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 242 ? CD ? A LYS 104 CD 2 1 Y 1 A LYS 242 ? CE ? A LYS 104 CE 3 1 Y 1 A LYS 242 ? NZ ? A LYS 104 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A SER 140 ? A SER 2 3 1 Y 1 A LYS 141 ? A LYS 3 4 1 Y 1 A LEU 142 ? A LEU 4 5 1 Y 1 A GLU 143 ? A GLU 5 6 1 Y 1 A GLU 144 ? A GLU 6 7 1 Y 1 A GLU 145 ? A GLU 7 8 1 Y 1 A VAL 146 ? A VAL 8 9 1 Y 1 B A 801 ? B A 1 10 1 Y 1 B U 805 ? B U 5 11 1 Y 1 B G 806 ? B G 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CA CA CA N N 111 CL CL CL N N 112 CYS N N N N 113 CYS CA C N R 114 CYS C C N N 115 CYS O O N N 116 CYS CB C N N 117 CYS SG S N N 118 CYS OXT O N N 119 CYS H H N N 120 CYS H2 H N N 121 CYS HA H N N 122 CYS HB2 H N N 123 CYS HB3 H N N 124 CYS HG H N N 125 CYS HXT H N N 126 EDO C1 C N N 127 EDO O1 O N N 128 EDO C2 C N N 129 EDO O2 O N N 130 EDO H11 H N N 131 EDO H12 H N N 132 EDO HO1 H N N 133 EDO H21 H N N 134 EDO H22 H N N 135 EDO HO2 H N N 136 G OP3 O N N 137 G P P N N 138 G OP1 O N N 139 G OP2 O N N 140 G "O5'" O N N 141 G "C5'" C N N 142 G "C4'" C N R 143 G "O4'" O N N 144 G "C3'" C N S 145 G "O3'" O N N 146 G "C2'" C N R 147 G "O2'" O N N 148 G "C1'" C N R 149 G N9 N Y N 150 G C8 C Y N 151 G N7 N Y N 152 G C5 C Y N 153 G C6 C N N 154 G O6 O N N 155 G N1 N N N 156 G C2 C N N 157 G N2 N N N 158 G N3 N N N 159 G C4 C Y N 160 G HOP3 H N N 161 G HOP2 H N N 162 G "H5'" H N N 163 G "H5''" H N N 164 G "H4'" H N N 165 G "H3'" H N N 166 G "HO3'" H N N 167 G "H2'" H N N 168 G "HO2'" H N N 169 G "H1'" H N N 170 G H8 H N N 171 G H1 H N N 172 G H21 H N N 173 G H22 H N N 174 GLN N N N N 175 GLN CA C N S 176 GLN C C N N 177 GLN O O N N 178 GLN CB C N N 179 GLN CG C N N 180 GLN CD C N N 181 GLN OE1 O N N 182 GLN NE2 N N N 183 GLN OXT O N N 184 GLN H H N N 185 GLN H2 H N N 186 GLN HA H N N 187 GLN HB2 H N N 188 GLN HB3 H N N 189 GLN HG2 H N N 190 GLN HG3 H N N 191 GLN HE21 H N N 192 GLN HE22 H N N 193 GLN HXT H N N 194 GLU N N N N 195 GLU CA C N S 196 GLU C C N N 197 GLU O O N N 198 GLU CB C N N 199 GLU CG C N N 200 GLU CD C N N 201 GLU OE1 O N N 202 GLU OE2 O N N 203 GLU OXT O N N 204 GLU H H N N 205 GLU H2 H N N 206 GLU HA H N N 207 GLU HB2 H N N 208 GLU HB3 H N N 209 GLU HG2 H N N 210 GLU HG3 H N N 211 GLU HE2 H N N 212 GLU HXT H N N 213 GLY N N N N 214 GLY CA C N N 215 GLY C C N N 216 GLY O O N N 217 GLY OXT O N N 218 GLY H H N N 219 GLY H2 H N N 220 GLY HA2 H N N 221 GLY HA3 H N N 222 GLY HXT H N N 223 HIS N N N N 224 HIS CA C N S 225 HIS C C N N 226 HIS O O N N 227 HIS CB C N N 228 HIS CG C Y N 229 HIS ND1 N Y N 230 HIS CD2 C Y N 231 HIS CE1 C Y N 232 HIS NE2 N Y N 233 HIS OXT O N N 234 HIS H H N N 235 HIS H2 H N N 236 HIS HA H N N 237 HIS HB2 H N N 238 HIS HB3 H N N 239 HIS HD1 H N N 240 HIS HD2 H N N 241 HIS HE1 H N N 242 HIS HE2 H N N 243 HIS HXT H N N 244 HOH O O N N 245 HOH H1 H N N 246 HOH H2 H N N 247 ILE N N N N 248 ILE CA C N S 249 ILE C C N N 250 ILE O O N N 251 ILE CB C N S 252 ILE CG1 C N N 253 ILE CG2 C N N 254 ILE CD1 C N N 255 ILE OXT O N N 256 ILE H H N N 257 ILE H2 H N N 258 ILE HA H N N 259 ILE HB H N N 260 ILE HG12 H N N 261 ILE HG13 H N N 262 ILE HG21 H N N 263 ILE HG22 H N N 264 ILE HG23 H N N 265 ILE HD11 H N N 266 ILE HD12 H N N 267 ILE HD13 H N N 268 ILE HXT H N N 269 LEU N N N N 270 LEU CA C N S 271 LEU C C N N 272 LEU O O N N 273 LEU CB C N N 274 LEU CG C N N 275 LEU CD1 C N N 276 LEU CD2 C N N 277 LEU OXT O N N 278 LEU H H N N 279 LEU H2 H N N 280 LEU HA H N N 281 LEU HB2 H N N 282 LEU HB3 H N N 283 LEU HG H N N 284 LEU HD11 H N N 285 LEU HD12 H N N 286 LEU HD13 H N N 287 LEU HD21 H N N 288 LEU HD22 H N N 289 LEU HD23 H N N 290 LEU HXT H N N 291 LYS N N N N 292 LYS CA C N S 293 LYS C C N N 294 LYS O O N N 295 LYS CB C N N 296 LYS CG C N N 297 LYS CD C N N 298 LYS CE C N N 299 LYS NZ N N N 300 LYS OXT O N N 301 LYS H H N N 302 LYS H2 H N N 303 LYS HA H N N 304 LYS HB2 H N N 305 LYS HB3 H N N 306 LYS HG2 H N N 307 LYS HG3 H N N 308 LYS HD2 H N N 309 LYS HD3 H N N 310 LYS HE2 H N N 311 LYS HE3 H N N 312 LYS HZ1 H N N 313 LYS HZ2 H N N 314 LYS HZ3 H N N 315 LYS HXT H N N 316 MET N N N N 317 MET CA C N S 318 MET C C N N 319 MET O O N N 320 MET CB C N N 321 MET CG C N N 322 MET SD S N N 323 MET CE C N N 324 MET OXT O N N 325 MET H H N N 326 MET H2 H N N 327 MET HA H N N 328 MET HB2 H N N 329 MET HB3 H N N 330 MET HG2 H N N 331 MET HG3 H N N 332 MET HE1 H N N 333 MET HE2 H N N 334 MET HE3 H N N 335 MET HXT H N N 336 PHE N N N N 337 PHE CA C N S 338 PHE C C N N 339 PHE O O N N 340 PHE CB C N N 341 PHE CG C Y N 342 PHE CD1 C Y N 343 PHE CD2 C Y N 344 PHE CE1 C Y N 345 PHE CE2 C Y N 346 PHE CZ C Y N 347 PHE OXT O N N 348 PHE H H N N 349 PHE H2 H N N 350 PHE HA H N N 351 PHE HB2 H N N 352 PHE HB3 H N N 353 PHE HD1 H N N 354 PHE HD2 H N N 355 PHE HE1 H N N 356 PHE HE2 H N N 357 PHE HZ H N N 358 PHE HXT H N N 359 PRO N N N N 360 PRO CA C N S 361 PRO C C N N 362 PRO O O N N 363 PRO CB C N N 364 PRO CG C N N 365 PRO CD C N N 366 PRO OXT O N N 367 PRO H H N N 368 PRO HA H N N 369 PRO HB2 H N N 370 PRO HB3 H N N 371 PRO HG2 H N N 372 PRO HG3 H N N 373 PRO HD2 H N N 374 PRO HD3 H N N 375 PRO HXT H N N 376 SER N N N N 377 SER CA C N S 378 SER C C N N 379 SER O O N N 380 SER CB C N N 381 SER OG O N N 382 SER OXT O N N 383 SER H H N N 384 SER H2 H N N 385 SER HA H N N 386 SER HB2 H N N 387 SER HB3 H N N 388 SER HG H N N 389 SER HXT H N N 390 THR N N N N 391 THR CA C N S 392 THR C C N N 393 THR O O N N 394 THR CB C N R 395 THR OG1 O N N 396 THR CG2 C N N 397 THR OXT O N N 398 THR H H N N 399 THR H2 H N N 400 THR HA H N N 401 THR HB H N N 402 THR HG1 H N N 403 THR HG21 H N N 404 THR HG22 H N N 405 THR HG23 H N N 406 THR HXT H N N 407 TRP N N N N 408 TRP CA C N S 409 TRP C C N N 410 TRP O O N N 411 TRP CB C N N 412 TRP CG C Y N 413 TRP CD1 C Y N 414 TRP CD2 C Y N 415 TRP NE1 N Y N 416 TRP CE2 C Y N 417 TRP CE3 C Y N 418 TRP CZ2 C Y N 419 TRP CZ3 C Y N 420 TRP CH2 C Y N 421 TRP OXT O N N 422 TRP H H N N 423 TRP H2 H N N 424 TRP HA H N N 425 TRP HB2 H N N 426 TRP HB3 H N N 427 TRP HD1 H N N 428 TRP HE1 H N N 429 TRP HE3 H N N 430 TRP HZ2 H N N 431 TRP HZ3 H N N 432 TRP HH2 H N N 433 TRP HXT H N N 434 TYR N N N N 435 TYR CA C N S 436 TYR C C N N 437 TYR O O N N 438 TYR CB C N N 439 TYR CG C Y N 440 TYR CD1 C Y N 441 TYR CD2 C Y N 442 TYR CE1 C Y N 443 TYR CE2 C Y N 444 TYR CZ C Y N 445 TYR OH O N N 446 TYR OXT O N N 447 TYR H H N N 448 TYR H2 H N N 449 TYR HA H N N 450 TYR HB2 H N N 451 TYR HB3 H N N 452 TYR HD1 H N N 453 TYR HD2 H N N 454 TYR HE1 H N N 455 TYR HE2 H N N 456 TYR HH H N N 457 TYR HXT H N N 458 U OP3 O N N 459 U P P N N 460 U OP1 O N N 461 U OP2 O N N 462 U "O5'" O N N 463 U "C5'" C N N 464 U "C4'" C N R 465 U "O4'" O N N 466 U "C3'" C N S 467 U "O3'" O N N 468 U "C2'" C N R 469 U "O2'" O N N 470 U "C1'" C N R 471 U N1 N N N 472 U C2 C N N 473 U O2 O N N 474 U N3 N N N 475 U C4 C N N 476 U O4 O N N 477 U C5 C N N 478 U C6 C N N 479 U HOP3 H N N 480 U HOP2 H N N 481 U "H5'" H N N 482 U "H5''" H N N 483 U "H4'" H N N 484 U "H3'" H N N 485 U "HO3'" H N N 486 U "H2'" H N N 487 U "HO2'" H N N 488 U "H1'" H N N 489 U H3 H N N 490 U H5 H N N 491 U H6 H N N 492 VAL N N N N 493 VAL CA C N S 494 VAL C C N N 495 VAL O O N N 496 VAL CB C N N 497 VAL CG1 C N N 498 VAL CG2 C N N 499 VAL OXT O N N 500 VAL H H N N 501 VAL H2 H N N 502 VAL HA H N N 503 VAL HB H N N 504 VAL HG11 H N N 505 VAL HG12 H N N 506 VAL HG13 H N N 507 VAL HG21 H N N 508 VAL HG22 H N N 509 VAL HG23 H N N 510 VAL HXT H N N 511 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 CYS N CA sing N N 109 CYS N H sing N N 110 CYS N H2 sing N N 111 CYS CA C sing N N 112 CYS CA CB sing N N 113 CYS CA HA sing N N 114 CYS C O doub N N 115 CYS C OXT sing N N 116 CYS CB SG sing N N 117 CYS CB HB2 sing N N 118 CYS CB HB3 sing N N 119 CYS SG HG sing N N 120 CYS OXT HXT sing N N 121 EDO C1 O1 sing N N 122 EDO C1 C2 sing N N 123 EDO C1 H11 sing N N 124 EDO C1 H12 sing N N 125 EDO O1 HO1 sing N N 126 EDO C2 O2 sing N N 127 EDO C2 H21 sing N N 128 EDO C2 H22 sing N N 129 EDO O2 HO2 sing N N 130 G OP3 P sing N N 131 G OP3 HOP3 sing N N 132 G P OP1 doub N N 133 G P OP2 sing N N 134 G P "O5'" sing N N 135 G OP2 HOP2 sing N N 136 G "O5'" "C5'" sing N N 137 G "C5'" "C4'" sing N N 138 G "C5'" "H5'" sing N N 139 G "C5'" "H5''" sing N N 140 G "C4'" "O4'" sing N N 141 G "C4'" "C3'" sing N N 142 G "C4'" "H4'" sing N N 143 G "O4'" "C1'" sing N N 144 G "C3'" "O3'" sing N N 145 G "C3'" "C2'" sing N N 146 G "C3'" "H3'" sing N N 147 G "O3'" "HO3'" sing N N 148 G "C2'" "O2'" sing N N 149 G "C2'" "C1'" sing N N 150 G "C2'" "H2'" sing N N 151 G "O2'" "HO2'" sing N N 152 G "C1'" N9 sing N N 153 G "C1'" "H1'" sing N N 154 G N9 C8 sing Y N 155 G N9 C4 sing Y N 156 G C8 N7 doub Y N 157 G C8 H8 sing N N 158 G N7 C5 sing Y N 159 G C5 C6 sing N N 160 G C5 C4 doub Y N 161 G C6 O6 doub N N 162 G C6 N1 sing N N 163 G N1 C2 sing N N 164 G N1 H1 sing N N 165 G C2 N2 sing N N 166 G C2 N3 doub N N 167 G N2 H21 sing N N 168 G N2 H22 sing N N 169 G N3 C4 sing N N 170 GLN N CA sing N N 171 GLN N H sing N N 172 GLN N H2 sing N N 173 GLN CA C sing N N 174 GLN CA CB sing N N 175 GLN CA HA sing N N 176 GLN C O doub N N 177 GLN C OXT sing N N 178 GLN CB CG sing N N 179 GLN CB HB2 sing N N 180 GLN CB HB3 sing N N 181 GLN CG CD sing N N 182 GLN CG HG2 sing N N 183 GLN CG HG3 sing N N 184 GLN CD OE1 doub N N 185 GLN CD NE2 sing N N 186 GLN NE2 HE21 sing N N 187 GLN NE2 HE22 sing N N 188 GLN OXT HXT sing N N 189 GLU N CA sing N N 190 GLU N H sing N N 191 GLU N H2 sing N N 192 GLU CA C sing N N 193 GLU CA CB sing N N 194 GLU CA HA sing N N 195 GLU C O doub N N 196 GLU C OXT sing N N 197 GLU CB CG sing N N 198 GLU CB HB2 sing N N 199 GLU CB HB3 sing N N 200 GLU CG CD sing N N 201 GLU CG HG2 sing N N 202 GLU CG HG3 sing N N 203 GLU CD OE1 doub N N 204 GLU CD OE2 sing N N 205 GLU OE2 HE2 sing N N 206 GLU OXT HXT sing N N 207 GLY N CA sing N N 208 GLY N H sing N N 209 GLY N H2 sing N N 210 GLY CA C sing N N 211 GLY CA HA2 sing N N 212 GLY CA HA3 sing N N 213 GLY C O doub N N 214 GLY C OXT sing N N 215 GLY OXT HXT sing N N 216 HIS N CA sing N N 217 HIS N H sing N N 218 HIS N H2 sing N N 219 HIS CA C sing N N 220 HIS CA CB sing N N 221 HIS CA HA sing N N 222 HIS C O doub N N 223 HIS C OXT sing N N 224 HIS CB CG sing N N 225 HIS CB HB2 sing N N 226 HIS CB HB3 sing N N 227 HIS CG ND1 sing Y N 228 HIS CG CD2 doub Y N 229 HIS ND1 CE1 doub Y N 230 HIS ND1 HD1 sing N N 231 HIS CD2 NE2 sing Y N 232 HIS CD2 HD2 sing N N 233 HIS CE1 NE2 sing Y N 234 HIS CE1 HE1 sing N N 235 HIS NE2 HE2 sing N N 236 HIS OXT HXT sing N N 237 HOH O H1 sing N N 238 HOH O H2 sing N N 239 ILE N CA sing N N 240 ILE N H sing N N 241 ILE N H2 sing N N 242 ILE CA C sing N N 243 ILE CA CB sing N N 244 ILE CA HA sing N N 245 ILE C O doub N N 246 ILE C OXT sing N N 247 ILE CB CG1 sing N N 248 ILE CB CG2 sing N N 249 ILE CB HB sing N N 250 ILE CG1 CD1 sing N N 251 ILE CG1 HG12 sing N N 252 ILE CG1 HG13 sing N N 253 ILE CG2 HG21 sing N N 254 ILE CG2 HG22 sing N N 255 ILE CG2 HG23 sing N N 256 ILE CD1 HD11 sing N N 257 ILE CD1 HD12 sing N N 258 ILE CD1 HD13 sing N N 259 ILE OXT HXT sing N N 260 LEU N CA sing N N 261 LEU N H sing N N 262 LEU N H2 sing N N 263 LEU CA C sing N N 264 LEU CA CB sing N N 265 LEU CA HA sing N N 266 LEU C O doub N N 267 LEU C OXT sing N N 268 LEU CB CG sing N N 269 LEU CB HB2 sing N N 270 LEU CB HB3 sing N N 271 LEU CG CD1 sing N N 272 LEU CG CD2 sing N N 273 LEU CG HG sing N N 274 LEU CD1 HD11 sing N N 275 LEU CD1 HD12 sing N N 276 LEU CD1 HD13 sing N N 277 LEU CD2 HD21 sing N N 278 LEU CD2 HD22 sing N N 279 LEU CD2 HD23 sing N N 280 LEU OXT HXT sing N N 281 LYS N CA sing N N 282 LYS N H sing N N 283 LYS N H2 sing N N 284 LYS CA C sing N N 285 LYS CA CB sing N N 286 LYS CA HA sing N N 287 LYS C O doub N N 288 LYS C OXT sing N N 289 LYS CB CG sing N N 290 LYS CB HB2 sing N N 291 LYS CB HB3 sing N N 292 LYS CG CD sing N N 293 LYS CG HG2 sing N N 294 LYS CG HG3 sing N N 295 LYS CD CE sing N N 296 LYS CD HD2 sing N N 297 LYS CD HD3 sing N N 298 LYS CE NZ sing N N 299 LYS CE HE2 sing N N 300 LYS CE HE3 sing N N 301 LYS NZ HZ1 sing N N 302 LYS NZ HZ2 sing N N 303 LYS NZ HZ3 sing N N 304 LYS OXT HXT sing N N 305 MET N CA sing N N 306 MET N H sing N N 307 MET N H2 sing N N 308 MET CA C sing N N 309 MET CA CB sing N N 310 MET CA HA sing N N 311 MET C O doub N N 312 MET C OXT sing N N 313 MET CB CG sing N N 314 MET CB HB2 sing N N 315 MET CB HB3 sing N N 316 MET CG SD sing N N 317 MET CG HG2 sing N N 318 MET CG HG3 sing N N 319 MET SD CE sing N N 320 MET CE HE1 sing N N 321 MET CE HE2 sing N N 322 MET CE HE3 sing N N 323 MET OXT HXT sing N N 324 PHE N CA sing N N 325 PHE N H sing N N 326 PHE N H2 sing N N 327 PHE CA C sing N N 328 PHE CA CB sing N N 329 PHE CA HA sing N N 330 PHE C O doub N N 331 PHE C OXT sing N N 332 PHE CB CG sing N N 333 PHE CB HB2 sing N N 334 PHE CB HB3 sing N N 335 PHE CG CD1 doub Y N 336 PHE CG CD2 sing Y N 337 PHE CD1 CE1 sing Y N 338 PHE CD1 HD1 sing N N 339 PHE CD2 CE2 doub Y N 340 PHE CD2 HD2 sing N N 341 PHE CE1 CZ doub Y N 342 PHE CE1 HE1 sing N N 343 PHE CE2 CZ sing Y N 344 PHE CE2 HE2 sing N N 345 PHE CZ HZ sing N N 346 PHE OXT HXT sing N N 347 PRO N CA sing N N 348 PRO N CD sing N N 349 PRO N H sing N N 350 PRO CA C sing N N 351 PRO CA CB sing N N 352 PRO CA HA sing N N 353 PRO C O doub N N 354 PRO C OXT sing N N 355 PRO CB CG sing N N 356 PRO CB HB2 sing N N 357 PRO CB HB3 sing N N 358 PRO CG CD sing N N 359 PRO CG HG2 sing N N 360 PRO CG HG3 sing N N 361 PRO CD HD2 sing N N 362 PRO CD HD3 sing N N 363 PRO OXT HXT sing N N 364 SER N CA sing N N 365 SER N H sing N N 366 SER N H2 sing N N 367 SER CA C sing N N 368 SER CA CB sing N N 369 SER CA HA sing N N 370 SER C O doub N N 371 SER C OXT sing N N 372 SER CB OG sing N N 373 SER CB HB2 sing N N 374 SER CB HB3 sing N N 375 SER OG HG sing N N 376 SER OXT HXT sing N N 377 THR N CA sing N N 378 THR N H sing N N 379 THR N H2 sing N N 380 THR CA C sing N N 381 THR CA CB sing N N 382 THR CA HA sing N N 383 THR C O doub N N 384 THR C OXT sing N N 385 THR CB OG1 sing N N 386 THR CB CG2 sing N N 387 THR CB HB sing N N 388 THR OG1 HG1 sing N N 389 THR CG2 HG21 sing N N 390 THR CG2 HG22 sing N N 391 THR CG2 HG23 sing N N 392 THR OXT HXT sing N N 393 TRP N CA sing N N 394 TRP N H sing N N 395 TRP N H2 sing N N 396 TRP CA C sing N N 397 TRP CA CB sing N N 398 TRP CA HA sing N N 399 TRP C O doub N N 400 TRP C OXT sing N N 401 TRP CB CG sing N N 402 TRP CB HB2 sing N N 403 TRP CB HB3 sing N N 404 TRP CG CD1 doub Y N 405 TRP CG CD2 sing Y N 406 TRP CD1 NE1 sing Y N 407 TRP CD1 HD1 sing N N 408 TRP CD2 CE2 doub Y N 409 TRP CD2 CE3 sing Y N 410 TRP NE1 CE2 sing Y N 411 TRP NE1 HE1 sing N N 412 TRP CE2 CZ2 sing Y N 413 TRP CE3 CZ3 doub Y N 414 TRP CE3 HE3 sing N N 415 TRP CZ2 CH2 doub Y N 416 TRP CZ2 HZ2 sing N N 417 TRP CZ3 CH2 sing Y N 418 TRP CZ3 HZ3 sing N N 419 TRP CH2 HH2 sing N N 420 TRP OXT HXT sing N N 421 TYR N CA sing N N 422 TYR N H sing N N 423 TYR N H2 sing N N 424 TYR CA C sing N N 425 TYR CA CB sing N N 426 TYR CA HA sing N N 427 TYR C O doub N N 428 TYR C OXT sing N N 429 TYR CB CG sing N N 430 TYR CB HB2 sing N N 431 TYR CB HB3 sing N N 432 TYR CG CD1 doub Y N 433 TYR CG CD2 sing Y N 434 TYR CD1 CE1 sing Y N 435 TYR CD1 HD1 sing N N 436 TYR CD2 CE2 doub Y N 437 TYR CD2 HD2 sing N N 438 TYR CE1 CZ doub Y N 439 TYR CE1 HE1 sing N N 440 TYR CE2 CZ sing Y N 441 TYR CE2 HE2 sing N N 442 TYR CZ OH sing N N 443 TYR OH HH sing N N 444 TYR OXT HXT sing N N 445 U OP3 P sing N N 446 U OP3 HOP3 sing N N 447 U P OP1 doub N N 448 U P OP2 sing N N 449 U P "O5'" sing N N 450 U OP2 HOP2 sing N N 451 U "O5'" "C5'" sing N N 452 U "C5'" "C4'" sing N N 453 U "C5'" "H5'" sing N N 454 U "C5'" "H5''" sing N N 455 U "C4'" "O4'" sing N N 456 U "C4'" "C3'" sing N N 457 U "C4'" "H4'" sing N N 458 U "O4'" "C1'" sing N N 459 U "C3'" "O3'" sing N N 460 U "C3'" "C2'" sing N N 461 U "C3'" "H3'" sing N N 462 U "O3'" "HO3'" sing N N 463 U "C2'" "O2'" sing N N 464 U "C2'" "C1'" sing N N 465 U "C2'" "H2'" sing N N 466 U "O2'" "HO2'" sing N N 467 U "C1'" N1 sing N N 468 U "C1'" "H1'" sing N N 469 U N1 C2 sing N N 470 U N1 C6 sing N N 471 U C2 O2 doub N N 472 U C2 N3 sing N N 473 U N3 C4 sing N N 474 U N3 H3 sing N N 475 U C4 O4 doub N N 476 U C4 C5 sing N N 477 U C5 C6 doub N N 478 U C5 H5 sing N N 479 U C6 H6 sing N N 480 VAL N CA sing N N 481 VAL N H sing N N 482 VAL N H2 sing N N 483 VAL CA C sing N N 484 VAL CA CB sing N N 485 VAL CA HA sing N N 486 VAL C O doub N N 487 VAL C OXT sing N N 488 VAL CB CG1 sing N N 489 VAL CB CG2 sing N N 490 VAL CB HB sing N N 491 VAL CG1 HG11 sing N N 492 VAL CG1 HG12 sing N N 493 VAL CG1 HG13 sing N N 494 VAL CG2 HG21 sing N N 495 VAL CG2 HG22 sing N N 496 VAL CG2 HG23 sing N N 497 VAL OXT HXT sing N N 498 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 'CALCIUM ION' CA 5 1,2-ETHANEDIOL EDO 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2DB1 _pdbx_initial_refinement_model.details ? #