HEADER HYDROLASE 11-JUL-14 4QUN TITLE CRYSTAL STRUCTURE OF THE PTPN3 (PTPH1) CATALYTIC DOMAIN C842S MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 628-909); COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE H1, PTP-H1; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPH1, PTPN3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ALPHA BETA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.E.CHEN,T.C.MENG,A.H.J.WANG REVDAT 2 08-NOV-23 4QUN 1 REMARK SEQADV REVDAT 1 10-DEC-14 4QUN 0 JRNL AUTH K.E.CHEN,S.Y.LIN,M.J.WU,M.R.HO,A.SANTHANAM,C.C.CHOU, JRNL AUTH 2 T.C.MENG,A.H.J.WANG JRNL TITL RECIPROCAL ALLOSTERIC REGULATION OF P38 GAMMA AND PTPN3 JRNL TITL 2 INVOLVES A PDZ DOMAIN-MODULATED COMPLEX FORMATION. JRNL REF SCI.SIGNAL. V. 7 RA98 2014 JRNL REFN ESSN 1937-9145 JRNL PMID 25314968 JRNL DOI 10.1126/SCISIGNAL.2005722 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 53350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7778 - 4.9605 0.97 2776 143 0.1633 0.1832 REMARK 3 2 4.9605 - 3.9380 0.96 2627 155 0.1456 0.1712 REMARK 3 3 3.9380 - 3.4404 0.97 2646 150 0.1671 0.1925 REMARK 3 4 3.4404 - 3.1259 0.99 2690 122 0.1872 0.2040 REMARK 3 5 3.1259 - 2.9019 1.00 2696 148 0.2038 0.2269 REMARK 3 6 2.9019 - 2.7308 1.00 2653 155 0.1957 0.2166 REMARK 3 7 2.7308 - 2.5941 1.00 2692 140 0.1836 0.2369 REMARK 3 8 2.5941 - 2.4812 1.00 2687 125 0.1813 0.2052 REMARK 3 9 2.4812 - 2.3856 1.00 2663 159 0.1824 0.2217 REMARK 3 10 2.3856 - 2.3033 1.00 2668 135 0.1779 0.2132 REMARK 3 11 2.3033 - 2.2313 1.00 2698 124 0.1734 0.2064 REMARK 3 12 2.2313 - 2.1675 1.00 2643 149 0.1757 0.2168 REMARK 3 13 2.1675 - 2.1105 1.00 2638 149 0.1806 0.2353 REMARK 3 14 2.1105 - 2.0590 1.00 2645 134 0.1811 0.2083 REMARK 3 15 2.0590 - 2.0122 1.00 2715 133 0.1886 0.2467 REMARK 3 16 2.0122 - 1.9693 1.00 2633 153 0.2087 0.2385 REMARK 3 17 1.9693 - 1.9300 1.00 2643 146 0.2118 0.2507 REMARK 3 18 1.9300 - 1.8935 1.00 2625 149 0.2245 0.2641 REMARK 3 19 1.8935 - 1.8597 0.98 2597 146 0.2363 0.2811 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4739 REMARK 3 ANGLE : 1.260 6468 REMARK 3 CHIRALITY : 0.057 730 REMARK 3 PLANARITY : 0.005 837 REMARK 3 DIHEDRAL : 14.273 1800 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5400 REMARK 200 MONOCHROMATOR : NI MIRROR + NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53391 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 2B49 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 12% PEG 8000, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.10350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.10350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.10350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.37000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.50000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.10350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.37000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.50000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 604 REMARK 465 HIS A 605 REMARK 465 HIS A 606 REMARK 465 HIS A 607 REMARK 465 HIS A 608 REMARK 465 HIS A 609 REMARK 465 HIS A 610 REMARK 465 SER A 611 REMARK 465 SER A 612 REMARK 465 GLY A 613 REMARK 465 VAL A 614 REMARK 465 ASP A 615 REMARK 465 LEU A 616 REMARK 465 GLY A 617 REMARK 465 THR A 618 REMARK 465 GLU A 619 REMARK 465 ASN A 620 REMARK 465 LEU A 621 REMARK 465 TYR A 622 REMARK 465 PHE A 623 REMARK 465 GLN A 624 REMARK 465 SER A 625 REMARK 465 MET A 909 REMARK 465 MET B 604 REMARK 465 HIS B 605 REMARK 465 HIS B 606 REMARK 465 HIS B 607 REMARK 465 HIS B 608 REMARK 465 HIS B 609 REMARK 465 HIS B 610 REMARK 465 SER B 611 REMARK 465 SER B 612 REMARK 465 GLY B 613 REMARK 465 VAL B 614 REMARK 465 ASP B 615 REMARK 465 LEU B 616 REMARK 465 GLY B 617 REMARK 465 THR B 618 REMARK 465 GLU B 619 REMARK 465 ASN B 620 REMARK 465 LEU B 621 REMARK 465 TYR B 622 REMARK 465 PHE B 623 REMARK 465 GLN B 624 REMARK 465 SER B 625 REMARK 465 MET B 909 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 639 CG CD CE NZ REMARK 480 GLU A 642 CG CD OE1 OE2 REMARK 480 GLN A 652 CG CD OE1 NE2 REMARK 480 ARG A 655 NE CZ NH1 NH2 REMARK 480 ASP A 678 OD1 OD2 REMARK 480 GLN A 690 CG CD OE1 NE2 REMARK 480 ASN A 692 CG OD1 ND2 REMARK 480 GLU A 693 CG CD OE1 OE2 REMARK 480 LYS A 736 CB CG CD CE NZ REMARK 480 HIS A 771 ND1 CD2 CE1 NE2 REMARK 480 GLN A 794 CG CD OE1 NE2 REMARK 480 ASP A 834 CG OD1 OD2 REMARK 480 LYS B 639 CG CD CE NZ REMARK 480 GLU B 642 CG CD OE1 OE2 REMARK 480 GLU B 651 CD OE1 OE2 REMARK 480 ARG B 655 NE CZ NH1 NH2 REMARK 480 ASP B 678 OD2 REMARK 480 ASN B 692 CG OD1 ND2 REMARK 480 LYS B 736 CB CG CD CE NZ REMARK 480 ARG B 751 CG CD NE CZ NH1 NH2 REMARK 480 HIS B 771 ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 663 -48.70 -130.48 REMARK 500 ILE A 705 77.57 -115.89 REMARK 500 ALA A 707 14.63 -67.02 REMARK 500 ARG A 749 59.28 37.45 REMARK 500 ALA A 808 53.28 -105.00 REMARK 500 SER A 842 -132.95 -128.01 REMARK 500 ILE A 846 -39.11 -131.84 REMARK 500 VAL A 885 102.97 68.11 REMARK 500 THR B 663 -52.15 -125.35 REMARK 500 ILE B 705 78.06 -118.03 REMARK 500 ALA B 707 23.64 -79.84 REMARK 500 LEU B 743 56.16 -110.66 REMARK 500 ASP B 763 152.50 -46.50 REMARK 500 ALA B 808 55.16 -106.17 REMARK 500 SER B 842 -134.40 -129.61 REMARK 500 VAL B 885 97.76 69.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B49 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PROTEIN TYROSINE REMARK 900 PHOSPHATASE, NON-RECEPTOR TYPE 3 REMARK 900 RELATED ID: 4QUM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PTPN3 (PTPH1) IN COMPLEX WITH A DUALLY REMARK 900 PHOSPHORYLATED MAPK12 PEPTIDE DBREF 4QUN A 628 909 UNP P26045 PTN3_HUMAN 628 909 DBREF 4QUN B 628 909 UNP P26045 PTN3_HUMAN 628 909 SEQADV 4QUN MET A 604 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS A 605 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS A 606 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS A 607 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS A 608 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS A 609 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS A 610 UNP P26045 EXPRESSION TAG SEQADV 4QUN SER A 611 UNP P26045 EXPRESSION TAG SEQADV 4QUN SER A 612 UNP P26045 EXPRESSION TAG SEQADV 4QUN GLY A 613 UNP P26045 EXPRESSION TAG SEQADV 4QUN VAL A 614 UNP P26045 EXPRESSION TAG SEQADV 4QUN ASP A 615 UNP P26045 EXPRESSION TAG SEQADV 4QUN LEU A 616 UNP P26045 EXPRESSION TAG SEQADV 4QUN GLY A 617 UNP P26045 EXPRESSION TAG SEQADV 4QUN THR A 618 UNP P26045 EXPRESSION TAG SEQADV 4QUN GLU A 619 UNP P26045 EXPRESSION TAG SEQADV 4QUN ASN A 620 UNP P26045 EXPRESSION TAG SEQADV 4QUN LEU A 621 UNP P26045 EXPRESSION TAG SEQADV 4QUN TYR A 622 UNP P26045 EXPRESSION TAG SEQADV 4QUN PHE A 623 UNP P26045 EXPRESSION TAG SEQADV 4QUN GLN A 624 UNP P26045 EXPRESSION TAG SEQADV 4QUN SER A 625 UNP P26045 EXPRESSION TAG SEQADV 4QUN ASN A 626 UNP P26045 EXPRESSION TAG SEQADV 4QUN ALA A 627 UNP P26045 EXPRESSION TAG SEQADV 4QUN SER A 842 UNP P26045 CYS 842 ENGINEERED MUTATION SEQADV 4QUN MET B 604 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS B 605 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS B 606 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS B 607 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS B 608 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS B 609 UNP P26045 EXPRESSION TAG SEQADV 4QUN HIS B 610 UNP P26045 EXPRESSION TAG SEQADV 4QUN SER B 611 UNP P26045 EXPRESSION TAG SEQADV 4QUN SER B 612 UNP P26045 EXPRESSION TAG SEQADV 4QUN GLY B 613 UNP P26045 EXPRESSION TAG SEQADV 4QUN VAL B 614 UNP P26045 EXPRESSION TAG SEQADV 4QUN ASP B 615 UNP P26045 EXPRESSION TAG SEQADV 4QUN LEU B 616 UNP P26045 EXPRESSION TAG SEQADV 4QUN GLY B 617 UNP P26045 EXPRESSION TAG SEQADV 4QUN THR B 618 UNP P26045 EXPRESSION TAG SEQADV 4QUN GLU B 619 UNP P26045 EXPRESSION TAG SEQADV 4QUN ASN B 620 UNP P26045 EXPRESSION TAG SEQADV 4QUN LEU B 621 UNP P26045 EXPRESSION TAG SEQADV 4QUN TYR B 622 UNP P26045 EXPRESSION TAG SEQADV 4QUN PHE B 623 UNP P26045 EXPRESSION TAG SEQADV 4QUN GLN B 624 UNP P26045 EXPRESSION TAG SEQADV 4QUN SER B 625 UNP P26045 EXPRESSION TAG SEQADV 4QUN ASN B 626 UNP P26045 EXPRESSION TAG SEQADV 4QUN ALA B 627 UNP P26045 EXPRESSION TAG SEQADV 4QUN SER B 842 UNP P26045 CYS 842 ENGINEERED MUTATION SEQRES 1 A 306 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 306 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA ASP THR SEQRES 3 A 306 LEU GLU GLY SER MET ALA GLN LEU LYS LYS GLY LEU GLU SEQRES 4 A 306 SER GLY THR VAL LEU ILE GLN PHE GLU GLN LEU TYR ARG SEQRES 5 A 306 LYS LYS PRO GLY LEU ALA ILE THR PHE ALA LYS LEU PRO SEQRES 6 A 306 GLN ASN LEU ASP LYS ASN ARG TYR LYS ASP VAL LEU PRO SEQRES 7 A 306 TYR ASP THR THR ARG VAL LEU LEU GLN GLY ASN GLU ASP SEQRES 8 A 306 TYR ILE ASN ALA SER TYR VAL ASN MET GLU ILE PRO ALA SEQRES 9 A 306 ALA ASN LEU VAL ASN LYS TYR ILE ALA THR GLN GLY PRO SEQRES 10 A 306 LEU PRO HIS THR CYS ALA GLN PHE TRP GLN VAL VAL TRP SEQRES 11 A 306 ASP GLN LYS LEU SER LEU ILE VAL MET LEU THR THR LEU SEQRES 12 A 306 THR GLU ARG GLY ARG THR LYS CYS HIS GLN TYR TRP PRO SEQRES 13 A 306 ASP PRO PRO ASP VAL MET ASN HIS GLY GLY PHE HIS ILE SEQRES 14 A 306 GLN CYS GLN SER GLU ASP CYS THR ILE ALA TYR VAL SER SEQRES 15 A 306 ARG GLU MET LEU VAL THR ASN THR GLN THR GLY GLU GLU SEQRES 16 A 306 HIS THR VAL THR HIS LEU GLN TYR VAL ALA TRP PRO ASP SEQRES 17 A 306 HIS GLY VAL PRO ASP ASP SER SER ASP PHE LEU GLU PHE SEQRES 18 A 306 VAL ASN TYR VAL ARG SER LEU ARG VAL ASP SER GLU PRO SEQRES 19 A 306 VAL LEU VAL HIS SER SER ALA GLY ILE GLY ARG THR GLY SEQRES 20 A 306 VAL LEU VAL THR MET GLU THR ALA MET CYS LEU THR GLU SEQRES 21 A 306 ARG ASN LEU PRO ILE TYR PRO LEU ASP ILE VAL ARG LYS SEQRES 22 A 306 MET ARG ASP GLN ARG ALA MET MET VAL GLN THR SER SER SEQRES 23 A 306 GLN TYR LYS PHE VAL CYS GLU ALA ILE LEU ARG VAL TYR SEQRES 24 A 306 GLU GLU GLY LEU VAL GLN MET SEQRES 1 B 306 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 306 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA ASP THR SEQRES 3 B 306 LEU GLU GLY SER MET ALA GLN LEU LYS LYS GLY LEU GLU SEQRES 4 B 306 SER GLY THR VAL LEU ILE GLN PHE GLU GLN LEU TYR ARG SEQRES 5 B 306 LYS LYS PRO GLY LEU ALA ILE THR PHE ALA LYS LEU PRO SEQRES 6 B 306 GLN ASN LEU ASP LYS ASN ARG TYR LYS ASP VAL LEU PRO SEQRES 7 B 306 TYR ASP THR THR ARG VAL LEU LEU GLN GLY ASN GLU ASP SEQRES 8 B 306 TYR ILE ASN ALA SER TYR VAL ASN MET GLU ILE PRO ALA SEQRES 9 B 306 ALA ASN LEU VAL ASN LYS TYR ILE ALA THR GLN GLY PRO SEQRES 10 B 306 LEU PRO HIS THR CYS ALA GLN PHE TRP GLN VAL VAL TRP SEQRES 11 B 306 ASP GLN LYS LEU SER LEU ILE VAL MET LEU THR THR LEU SEQRES 12 B 306 THR GLU ARG GLY ARG THR LYS CYS HIS GLN TYR TRP PRO SEQRES 13 B 306 ASP PRO PRO ASP VAL MET ASN HIS GLY GLY PHE HIS ILE SEQRES 14 B 306 GLN CYS GLN SER GLU ASP CYS THR ILE ALA TYR VAL SER SEQRES 15 B 306 ARG GLU MET LEU VAL THR ASN THR GLN THR GLY GLU GLU SEQRES 16 B 306 HIS THR VAL THR HIS LEU GLN TYR VAL ALA TRP PRO ASP SEQRES 17 B 306 HIS GLY VAL PRO ASP ASP SER SER ASP PHE LEU GLU PHE SEQRES 18 B 306 VAL ASN TYR VAL ARG SER LEU ARG VAL ASP SER GLU PRO SEQRES 19 B 306 VAL LEU VAL HIS SER SER ALA GLY ILE GLY ARG THR GLY SEQRES 20 B 306 VAL LEU VAL THR MET GLU THR ALA MET CYS LEU THR GLU SEQRES 21 B 306 ARG ASN LEU PRO ILE TYR PRO LEU ASP ILE VAL ARG LYS SEQRES 22 B 306 MET ARG ASP GLN ARG ALA MET MET VAL GLN THR SER SER SEQRES 23 B 306 GLN TYR LYS PHE VAL CYS GLU ALA ILE LEU ARG VAL TYR SEQRES 24 B 306 GLU GLU GLY LEU VAL GLN MET HET PO4 A1001 5 HET PO4 B1001 5 HET GOL B1002 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *338(H2 O) HELIX 1 1 THR A 629 GLY A 644 1 16 HELIX 2 2 GLY A 644 LEU A 653 1 10 HELIX 3 3 THR A 663 LEU A 667 5 5 HELIX 4 4 ASN A 670 ASN A 674 5 5 HELIX 5 5 PRO A 706 ASN A 709 5 4 HELIX 6 6 LEU A 721 HIS A 723 5 3 HELIX 7 7 THR A 724 LYS A 736 1 13 HELIX 8 8 ASP A 817 ARG A 832 1 16 HELIX 9 9 ILE A 846 ARG A 864 1 19 HELIX 10 10 TYR A 869 ASP A 879 1 11 HELIX 11 11 THR A 887 GLN A 908 1 22 HELIX 12 12 THR B 629 GLY B 644 1 16 HELIX 13 13 GLY B 644 LEU B 653 1 10 HELIX 14 14 THR B 663 ASN B 674 5 12 HELIX 15 15 PRO B 706 ASN B 709 5 4 HELIX 16 16 LEU B 721 HIS B 723 5 3 HELIX 17 17 THR B 724 GLN B 735 1 12 HELIX 18 18 ASP B 817 ARG B 832 1 16 HELIX 19 19 ILE B 846 GLU B 863 1 18 HELIX 20 20 TYR B 869 ASP B 879 1 11 HELIX 21 21 THR B 887 GLN B 908 1 22 SHEET 1 A 9 ARG A 686 LEU A 688 0 SHEET 2 A 9 TYR A 695 ILE A 705 -1 O ALA A 698 N VAL A 687 SHEET 3 A 9 LEU A 710 THR A 717 -1 O LEU A 710 N ILE A 705 SHEET 4 A 9 VAL A 838 HIS A 841 1 O VAL A 840 N ILE A 715 SHEET 5 A 9 LEU A 739 MET A 742 1 N VAL A 741 O LEU A 839 SHEET 6 A 9 GLU A 798 TYR A 806 1 O LEU A 804 N MET A 742 SHEET 7 A 9 TYR A 783 ASN A 792 -1 N VAL A 790 O HIS A 799 SHEET 8 A 9 PHE A 770 CYS A 779 -1 N ASP A 778 O SER A 785 SHEET 9 A 9 VAL A 764 HIS A 767 -1 N MET A 765 O ILE A 772 SHEET 1 B 2 THR A 747 GLU A 748 0 SHEET 2 B 2 ARG A 751 THR A 752 -1 O ARG A 751 N GLU A 748 SHEET 1 C 9 ARG B 686 LEU B 688 0 SHEET 2 C 9 TYR B 695 ILE B 705 -1 O ALA B 698 N VAL B 687 SHEET 3 C 9 LEU B 710 THR B 717 -1 O ASN B 712 N MET B 703 SHEET 4 C 9 VAL B 838 HIS B 841 1 O VAL B 840 N ILE B 715 SHEET 5 C 9 LEU B 739 MET B 742 1 N VAL B 741 O LEU B 839 SHEET 6 C 9 GLU B 798 TYR B 806 1 O LEU B 804 N MET B 742 SHEET 7 C 9 TYR B 783 ASN B 792 -1 N VAL B 790 O HIS B 799 SHEET 8 C 9 PHE B 770 CYS B 779 -1 N GLN B 773 O LEU B 789 SHEET 9 C 9 VAL B 764 HIS B 767 -1 N MET B 765 O ILE B 772 SHEET 1 D 2 THR B 747 GLU B 748 0 SHEET 2 D 2 ARG B 751 THR B 752 -1 O ARG B 751 N GLU B 748 CISPEP 1 SER A 643 GLY A 644 0 2.17 CISPEP 2 PRO A 761 PRO A 762 0 -4.24 CISPEP 3 SER B 643 GLY B 644 0 -7.93 CISPEP 4 PRO B 761 PRO B 762 0 -0.65 SITE 1 AC1 10 ASP A 811 SER A 842 SER A 843 ALA A 844 SITE 2 AC1 10 GLY A 845 ILE A 846 GLY A 847 ARG A 848 SITE 3 AC1 10 GLN A 886 HOH A1102 SITE 1 AC2 11 ASP B 811 SER B 842 SER B 843 ALA B 844 SITE 2 AC2 11 GLY B 845 ILE B 846 GLY B 847 ARG B 848 SITE 3 AC2 11 GLN B 886 GOL B1002 HOH B1101 SITE 1 AC3 7 TYR B 676 ASP B 811 HIS B 812 ALA B 844 SITE 2 AC3 7 GLN B 886 PO4 B1001 HOH B1231 CRYST1 94.740 97.000 138.207 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010555 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007236 0.00000