HEADER VIRAL PROTEIN 14-JUL-14 4QUZ TITLE CRYSTAL STRUCTURE OF FELINE NOROVIRUS P DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN (UNP RESIDUES 225-565); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS CAT/GIV.2/CU081210E/USA/2010; SOURCE 3 ORGANISM_TAXID: 1160949; SOURCE 4 GENE: JF781268; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS FELINE NOROVIRUS, VIRAL CAPSID PROTEIN, P DOMAIN, PROTRUDING DOMAIN, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,G.S.HANSMAN REVDAT 3 20-MAR-24 4QUZ 1 REMARK REVDAT 2 04-MAR-15 4QUZ 1 JRNL REVDAT 1 19-NOV-14 4QUZ 0 JRNL AUTH B.K.SINGH,S.GLATT,J.L.FERRER,A.D.KOROMYSLOVA,M.M.LEUTHOLD, JRNL AUTH 2 J.DUNDER,G.S.HANSMAN JRNL TITL STRUCTURAL ANALYSIS OF A FELINE NOROVIRUS PROTRUDING DOMAIN. JRNL REF VIROLOGY V. 474 181 2015 JRNL REFN ISSN 0042-6822 JRNL PMID 25463616 JRNL DOI 10.1016/J.VIROL.2014.10.028 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 27538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6450 - 5.0613 0.97 2622 139 0.1649 0.2205 REMARK 3 2 5.0613 - 4.0179 0.98 2607 137 0.1585 0.2047 REMARK 3 3 4.0179 - 3.5102 0.96 2555 135 0.2112 0.2699 REMARK 3 4 3.5102 - 3.1893 0.99 2625 138 0.2101 0.2823 REMARK 3 5 3.1893 - 2.9607 0.99 2622 137 0.2335 0.2588 REMARK 3 6 2.9607 - 2.7862 0.99 2634 139 0.2599 0.3112 REMARK 3 7 2.7862 - 2.6467 0.99 2634 139 0.2576 0.3078 REMARK 3 8 2.6467 - 2.5315 0.99 2619 138 0.2565 0.3294 REMARK 3 9 2.5315 - 2.4340 0.99 2627 138 0.2723 0.3089 REMARK 3 10 2.4340 - 2.3500 0.99 2615 138 0.2516 0.2903 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4938 REMARK 3 ANGLE : 0.832 6746 REMARK 3 CHIRALITY : 0.033 738 REMARK 3 PLANARITY : 0.006 895 REMARK 3 DIHEDRAL : 13.779 1749 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 225:285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.3167 9.0108 116.8819 REMARK 3 T TENSOR REMARK 3 T11: 0.2138 T22: 0.2747 REMARK 3 T33: 0.5384 T12: -0.0029 REMARK 3 T13: -0.0398 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.4832 L22: 0.9799 REMARK 3 L33: 1.1812 L12: -0.0516 REMARK 3 L13: 0.2146 L23: -0.0027 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.0298 S13: 0.0401 REMARK 3 S21: -0.0176 S22: -0.0104 S23: 0.1822 REMARK 3 S31: -0.0086 S32: 0.0280 S33: 0.0120 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 286:453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0991 21.9535 133.6037 REMARK 3 T TENSOR REMARK 3 T11: 0.3084 T22: 0.3284 REMARK 3 T33: 0.3754 T12: 0.0674 REMARK 3 T13: 0.0078 T23: -0.0722 REMARK 3 L TENSOR REMARK 3 L11: 2.6896 L22: 1.2685 REMARK 3 L33: 1.0457 L12: 0.1530 REMARK 3 L13: 0.7355 L23: -0.0979 REMARK 3 S TENSOR REMARK 3 S11: -0.1232 S12: -0.3501 S13: 0.4544 REMARK 3 S21: 0.3108 S22: 0.0622 S23: 0.2542 REMARK 3 S31: -0.0521 S32: -0.1447 S33: 0.0747 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 454:565 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9400 1.4062 112.0804 REMARK 3 T TENSOR REMARK 3 T11: 0.2251 T22: 0.2826 REMARK 3 T33: 0.4045 T12: -0.0278 REMARK 3 T13: -0.0383 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.5891 L22: 1.3780 REMARK 3 L33: 0.8965 L12: -0.3752 REMARK 3 L13: -0.3500 L23: 0.3849 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.1331 S13: -0.1597 REMARK 3 S21: -0.1244 S22: -0.0295 S23: 0.2871 REMARK 3 S31: 0.1223 S32: -0.0575 S33: 0.0180 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 225:345 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.4015 5.9270 124.3024 REMARK 3 T TENSOR REMARK 3 T11: 0.1741 T22: 0.2632 REMARK 3 T33: 0.3522 T12: 0.0089 REMARK 3 T13: -0.0185 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.2824 L22: 0.7737 REMARK 3 L33: 0.6827 L12: 0.0870 REMARK 3 L13: -0.0536 L23: -0.1972 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: -0.1062 S13: -0.1651 REMARK 3 S21: 0.0665 S22: 0.0134 S23: -0.1944 REMARK 3 S31: 0.0876 S32: -0.0038 S33: 0.0335 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 346:453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.1897 2.0086 134.0530 REMARK 3 T TENSOR REMARK 3 T11: 0.2954 T22: 0.3366 REMARK 3 T33: 0.4099 T12: 0.0632 REMARK 3 T13: -0.0750 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.5236 L22: 1.4223 REMARK 3 L33: 0.9789 L12: -0.2409 REMARK 3 L13: -0.4683 L23: -0.0369 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: -0.2765 S13: -0.0442 REMARK 3 S21: 0.2463 S22: 0.0786 S23: -0.2540 REMARK 3 S31: 0.0212 S32: 0.1331 S33: 0.0397 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 454:565 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.6187 20.1543 111.9940 REMARK 3 T TENSOR REMARK 3 T11: 0.2211 T22: 0.3070 REMARK 3 T33: 0.4356 T12: 0.0012 REMARK 3 T13: -0.0154 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.4285 L22: 1.5598 REMARK 3 L33: 1.4649 L12: -0.3174 REMARK 3 L13: 0.2718 L23: -0.3528 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: 0.0499 S13: 0.2561 REMARK 3 S21: -0.0840 S22: -0.1187 S23: -0.2811 REMARK 3 S31: -0.1407 S32: 0.0747 S33: 0.0799 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2840 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979738 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 49.634 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.20400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, GLYCEROL, 2-PROPANOL, SODIUM REMARK 280 CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.96000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 297 REMARK 465 GLY A 298 REMARK 465 ALA A 299 REMARK 465 PRO A 300 REMARK 465 ALA A 301 REMARK 465 LEU A 302 REMARK 465 THR A 303 REMARK 465 GLU A 304 REMARK 465 GLU A 305 REMARK 465 MET A 306 REMARK 465 PRO A 307 REMARK 465 PRO A 308 REMARK 465 LEU A 309 REMARK 465 GLU A 310 REMARK 465 ASP A 311 REMARK 465 GLU A 312 REMARK 465 VAL A 313 REMARK 465 ALA A 314 REMARK 465 ASP A 315 REMARK 465 GLY A 316 REMARK 465 ALA A 317 REMARK 465 ALA A 318 REMARK 465 ALA A 319 REMARK 465 THR A 320 REMARK 465 TYR A 321 REMARK 465 THR A 322 REMARK 465 LEU A 323 REMARK 465 ALA A 324 REMARK 465 ARG A 325 REMARK 465 ALA A 326 REMARK 465 ARG B 297 REMARK 465 GLY B 298 REMARK 465 ALA B 299 REMARK 465 PRO B 300 REMARK 465 ALA B 301 REMARK 465 LEU B 302 REMARK 465 THR B 303 REMARK 465 GLU B 304 REMARK 465 GLU B 305 REMARK 465 MET B 306 REMARK 465 PRO B 307 REMARK 465 PRO B 308 REMARK 465 LEU B 309 REMARK 465 GLU B 310 REMARK 465 ASP B 311 REMARK 465 GLU B 312 REMARK 465 VAL B 313 REMARK 465 ALA B 314 REMARK 465 ASP B 315 REMARK 465 GLY B 316 REMARK 465 ALA B 317 REMARK 465 ALA B 318 REMARK 465 ALA B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 321 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 341 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 543 75.35 -102.18 REMARK 500 ASN B 543 76.61 -104.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QV2 RELATED DB: PDB REMARK 900 UNLIGANDED CRYSTAL STRUCTURE OF FELINE NOROVIRUS P DOMAIN CO- REMARK 900 CRYSTALLIZED WITH HBGA A-TRISACCHARIDE REMARK 900 RELATED ID: 4QVA RELATED DB: PDB REMARK 900 UNLIGANDED CRYSTAL STRUCTURE OF FELINE NOROVIRUS P DOMAIN CO- REMARK 900 CRYSTALLIZED WITH N-GLYCOLYLNEURAMINIC ACID DBREF 4QUZ A 225 565 UNP H8YRY9 H8YRY9_9CALI 225 565 DBREF 4QUZ B 225 565 UNP H8YRY9 H8YRY9_9CALI 225 565 SEQRES 1 A 341 VAL SER PHE SER VAL PRO GLY LEU VAL VAL GLU ASP MET SEQRES 2 A 341 SER ASN SER ARG TRP PRO ALA GLN ILE ASN GLY LEU VAL SEQRES 3 A 341 VAL ARG GLY ASN GLU ALA GLN VAL VAL HIS PHE GLN ASN SEQRES 4 A 341 GLY ARG CYS THR THR GLU GLY THR LEU LEU GLY THR THR SEQRES 5 A 341 THR LEU SER ILE ASN SER ILE CYS GLY LEU ARG GLY LEU SEQRES 6 A 341 SER VAL SER GLN ALA SER VAL ARG GLY ALA PRO ALA LEU SEQRES 7 A 341 THR GLU GLU MET PRO PRO LEU GLU ASP GLU VAL ALA ASP SEQRES 8 A 341 GLY ALA ALA ALA THR TYR THR LEU ALA ARG ALA ALA ASP SEQRES 9 A 341 THR THR LEU TRP LEU ARG VAL GLU GLU PRO ASP GLY ARG SEQRES 10 A 341 PRO TYR ASP ILE PHE GLY ASP GLN PRO ALA PRO LEU GLY SEQRES 11 A 341 THR PRO ASP PHE THR ALA VAL ILE VAL GLY THR ALA ILE SEQRES 12 A 341 ARG PRO ARG THR ALA SER GLY ALA TYR LEU HIS ASP ALA SEQRES 13 A 341 TYR VAL ASP THR THR PRO GLY ASP ALA ASP PHE THR PRO SEQRES 14 A 341 SER THR GLY ASN THR LYS ILE VAL LEU ARG GLY GLY GLY SEQRES 15 A 341 SER GLY HIS VAL GLY GLN GLY HIS TYR TRP GLN PHE ARG SEQRES 16 A 341 PRO ILE ALA VAL GLU GLY GLY GLY SER ARG PRO GLN TYR SEQRES 17 A 341 GLN GLU TYR ASN LEU PRO ASP TYR ALA GLY PRO THR ALA SEQRES 18 A 341 SER ASN HIS ASP LEU ALA PRO PRO VAL ALA PRO ARG MET SEQRES 19 A 341 PRO GLY GLU LEU LEU LEU LEU PHE GLU SER ASP MET PRO SEQRES 20 A 341 VAL TRP ASP ASN GLY ALA GLY ALA ALA PRO ALA GLN LYS SEQRES 21 A 341 ILE HIS CYS LEU LEU PRO ASN GLU PHE ILE THR HIS LEU SEQRES 22 A 341 PHE ASP LEU GLN ALA PRO ALA LEU ALA GLU ALA ALA LEU SEQRES 23 A 341 LEU ARG TYR VAL HIS PRO ASP SER GLY ARG THR LEU PHE SEQRES 24 A 341 GLU CYS LYS LEU TYR ARG GLU GLY TYR MET VAL VAL ALA SEQRES 25 A 341 ALA PRO ALA GLY ARG LEU ASN PHE PRO LEU ASP GLY TYR SEQRES 26 A 341 PHE ARG PHE ASP SER TRP VAL SER ALA PHE TYR ILE LEU SEQRES 27 A 341 SER PRO VAL SEQRES 1 B 341 VAL SER PHE SER VAL PRO GLY LEU VAL VAL GLU ASP MET SEQRES 2 B 341 SER ASN SER ARG TRP PRO ALA GLN ILE ASN GLY LEU VAL SEQRES 3 B 341 VAL ARG GLY ASN GLU ALA GLN VAL VAL HIS PHE GLN ASN SEQRES 4 B 341 GLY ARG CYS THR THR GLU GLY THR LEU LEU GLY THR THR SEQRES 5 B 341 THR LEU SER ILE ASN SER ILE CYS GLY LEU ARG GLY LEU SEQRES 6 B 341 SER VAL SER GLN ALA SER VAL ARG GLY ALA PRO ALA LEU SEQRES 7 B 341 THR GLU GLU MET PRO PRO LEU GLU ASP GLU VAL ALA ASP SEQRES 8 B 341 GLY ALA ALA ALA THR TYR THR LEU ALA ARG ALA ALA ASP SEQRES 9 B 341 THR THR LEU TRP LEU ARG VAL GLU GLU PRO ASP GLY ARG SEQRES 10 B 341 PRO TYR ASP ILE PHE GLY ASP GLN PRO ALA PRO LEU GLY SEQRES 11 B 341 THR PRO ASP PHE THR ALA VAL ILE VAL GLY THR ALA ILE SEQRES 12 B 341 ARG PRO ARG THR ALA SER GLY ALA TYR LEU HIS ASP ALA SEQRES 13 B 341 TYR VAL ASP THR THR PRO GLY ASP ALA ASP PHE THR PRO SEQRES 14 B 341 SER THR GLY ASN THR LYS ILE VAL LEU ARG GLY GLY GLY SEQRES 15 B 341 SER GLY HIS VAL GLY GLN GLY HIS TYR TRP GLN PHE ARG SEQRES 16 B 341 PRO ILE ALA VAL GLU GLY GLY GLY SER ARG PRO GLN TYR SEQRES 17 B 341 GLN GLU TYR ASN LEU PRO ASP TYR ALA GLY PRO THR ALA SEQRES 18 B 341 SER ASN HIS ASP LEU ALA PRO PRO VAL ALA PRO ARG MET SEQRES 19 B 341 PRO GLY GLU LEU LEU LEU LEU PHE GLU SER ASP MET PRO SEQRES 20 B 341 VAL TRP ASP ASN GLY ALA GLY ALA ALA PRO ALA GLN LYS SEQRES 21 B 341 ILE HIS CYS LEU LEU PRO ASN GLU PHE ILE THR HIS LEU SEQRES 22 B 341 PHE ASP LEU GLN ALA PRO ALA LEU ALA GLU ALA ALA LEU SEQRES 23 B 341 LEU ARG TYR VAL HIS PRO ASP SER GLY ARG THR LEU PHE SEQRES 24 B 341 GLU CYS LYS LEU TYR ARG GLU GLY TYR MET VAL VAL ALA SEQRES 25 B 341 ALA PRO ALA GLY ARG LEU ASN PHE PRO LEU ASP GLY TYR SEQRES 26 B 341 PHE ARG PHE ASP SER TRP VAL SER ALA PHE TYR ILE LEU SEQRES 27 B 341 SER PRO VAL HET EDO A 601 4 HET EDO B 601 4 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *206(H2 O) HELIX 1 1 VAL A 233 MET A 237 5 5 HELIX 2 2 SER A 279 ILE A 283 5 5 HELIX 3 3 THR A 392 THR A 395 5 4 HELIX 4 4 PRO A 490 GLN A 501 1 12 HELIX 5 5 VAL B 233 MET B 237 5 5 HELIX 6 6 SER B 279 ILE B 283 5 5 HELIX 7 7 SER B 292 VAL B 296 5 5 HELIX 8 8 TYR B 321 ALA B 327 1 7 HELIX 9 9 THR B 392 THR B 395 5 4 HELIX 10 10 PRO B 490 GLN B 501 1 12 SHEET 1 A 4 GLN A 483 CYS A 487 0 SHEET 2 A 4 LEU A 462 MET A 470 -1 N MET A 470 O GLN A 483 SHEET 3 A 4 GLY A 248 ARG A 252 -1 N VAL A 250 O LEU A 465 SHEET 4 A 4 GLY A 540 ARG A 541 -1 O GLY A 540 N VAL A 251 SHEET 1 B 6 GLN A 483 CYS A 487 0 SHEET 2 B 6 LEU A 462 MET A 470 -1 N MET A 470 O GLN A 483 SHEET 3 B 6 MET A 533 VAL A 535 -1 O VAL A 535 N LEU A 462 SHEET 4 B 6 ARG A 520 TYR A 528 -1 N LYS A 526 O VAL A 534 SHEET 5 B 6 ALA A 508 HIS A 515 -1 N TYR A 513 O PHE A 523 SHEET 6 B 6 TYR A 549 VAL A 556 -1 O TYR A 549 N VAL A 514 SHEET 1 C 8 VAL A 472 TRP A 473 0 SHEET 2 C 8 TYR A 415 GLU A 424 1 N VAL A 423 O TRP A 473 SHEET 3 C 8 VAL A 361 ARG A 368 -1 N ILE A 367 O GLN A 417 SHEET 4 C 8 TYR A 376 ASP A 383 -1 O TYR A 376 N ARG A 368 SHEET 5 C 8 ASN A 397 LEU A 402 -1 O VAL A 401 N TYR A 381 SHEET 6 C 8 THR A 329 VAL A 335 -1 N THR A 329 O LEU A 402 SHEET 7 C 8 LEU A 286 VAL A 291 -1 N LEU A 289 O ARG A 334 SHEET 8 C 8 TYR A 415 GLU A 424 -1 O PHE A 418 N LEU A 286 SHEET 1 D 4 GLN B 483 CYS B 487 0 SHEET 2 D 4 LEU B 462 MET B 470 -1 N MET B 470 O GLN B 483 SHEET 3 D 4 GLY B 248 ARG B 252 -1 N GLY B 248 O GLU B 467 SHEET 4 D 4 GLY B 540 ARG B 541 -1 O GLY B 540 N VAL B 251 SHEET 1 E 6 GLN B 483 CYS B 487 0 SHEET 2 E 6 LEU B 462 MET B 470 -1 N MET B 470 O GLN B 483 SHEET 3 E 6 TYR B 532 VAL B 535 -1 O MET B 533 N LEU B 464 SHEET 4 E 6 ARG B 520 TYR B 528 -1 N TYR B 528 O TYR B 532 SHEET 5 E 6 ALA B 508 HIS B 515 -1 N ALA B 509 O LEU B 527 SHEET 6 E 6 TYR B 549 VAL B 556 -1 O TYR B 549 N VAL B 514 SHEET 1 F 8 VAL B 472 TRP B 473 0 SHEET 2 F 8 TYR B 415 GLU B 424 1 N VAL B 423 O TRP B 473 SHEET 3 F 8 VAL B 361 ARG B 368 -1 N VAL B 363 O ALA B 422 SHEET 4 F 8 TYR B 376 ASP B 383 -1 O TYR B 376 N ARG B 368 SHEET 5 F 8 ASN B 397 LEU B 402 -1 O VAL B 401 N TYR B 381 SHEET 6 F 8 THR B 329 VAL B 335 -1 N THR B 329 O LEU B 402 SHEET 7 F 8 LEU B 286 SER B 290 -1 N LEU B 289 O ARG B 334 SHEET 8 F 8 TYR B 415 GLU B 424 -1 O PHE B 418 N LEU B 286 SITE 1 AC1 2 ARG A 403 GLU A 424 SITE 1 AC2 5 LEU B 272 LEU B 273 GLY B 274 THR B 276 SITE 2 AC2 5 LEU B 353 SITE 1 AC3 2 ARG B 403 GLU B 424 SITE 1 AC4 3 LEU A 377 ASP B 379 HOH B 796 SITE 1 AC5 5 ASN A 254 GLU A 255 HIS B 448 ASP B 449 SITE 2 AC5 5 LEU B 450 CRYST1 57.740 99.920 59.610 90.00 97.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017319 0.000000 0.002411 0.00000 SCALE2 0.000000 0.010008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016937 0.00000