HEADER VIRAL PROTEIN 14-JUL-14 4QV2 TITLE UNLIGANDED CRYSTAL STRUCTURE OF FELINE NOROVIRUS P DOMAIN CO- TITLE 2 CRYSTALLIZED WITH HBGA A-TRISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN (UNP RESIDUES 225-565); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS CAT/GIV.2/CU081210E/USA/2010; SOURCE 3 ORGANISM_TAXID: 1160949; SOURCE 4 GENE: JF781268; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS FELINE NOROVIRUS, CAPSID PROTEIN, P DOMAIN, PROTRUDING DOMAIN, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,G.S.HANSMAN REVDAT 4 20-MAR-24 4QV2 1 REMARK REVDAT 3 20-NOV-19 4QV2 1 REMARK REVDAT 2 04-MAR-15 4QV2 1 JRNL REVDAT 1 19-NOV-14 4QV2 0 JRNL AUTH B.K.SINGH,S.GLATT,J.L.FERRER,A.D.KOROMYSLOVA,M.M.LEUTHOLD, JRNL AUTH 2 J.DUNDER,G.S.HANSMAN JRNL TITL STRUCTURAL ANALYSIS OF A FELINE NOROVIRUS PROTRUDING DOMAIN. JRNL REF VIROLOGY V. 474 181 2015 JRNL REFN ISSN 0042-6822 JRNL PMID 25463616 JRNL DOI 10.1016/J.VIROL.2014.10.028 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 75647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3920 - 5.0300 0.99 2702 143 0.1680 0.1864 REMARK 3 2 5.0300 - 3.9964 1.00 2681 141 0.1225 0.1177 REMARK 3 3 3.9964 - 3.4924 1.00 2678 141 0.1368 0.1665 REMARK 3 4 3.4924 - 3.1736 1.00 2684 141 0.1383 0.1546 REMARK 3 5 3.1736 - 2.9464 1.00 2683 141 0.1438 0.1562 REMARK 3 6 2.9464 - 2.7729 1.00 2668 141 0.1571 0.1807 REMARK 3 7 2.7729 - 2.6341 1.00 2661 140 0.1536 0.2055 REMARK 3 8 2.6341 - 2.5195 1.00 2658 140 0.1470 0.1752 REMARK 3 9 2.5195 - 2.4226 1.00 2669 141 0.1488 0.1839 REMARK 3 10 2.4226 - 2.3391 1.00 2680 141 0.1429 0.1939 REMARK 3 11 2.3391 - 2.2660 1.00 2666 140 0.1365 0.1461 REMARK 3 12 2.2660 - 2.2012 1.00 2637 139 0.1418 0.1671 REMARK 3 13 2.2012 - 2.1433 1.00 2667 140 0.1458 0.1666 REMARK 3 14 2.1433 - 2.0910 1.00 2674 141 0.1602 0.1929 REMARK 3 15 2.0910 - 2.0435 1.00 2659 140 0.1654 0.2040 REMARK 3 16 2.0435 - 2.0000 0.98 2609 137 0.2090 0.2237 REMARK 3 17 2.0000 - 1.9600 1.00 2654 140 0.1842 0.1934 REMARK 3 18 1.9600 - 1.9230 1.00 2645 139 0.1788 0.1966 REMARK 3 19 1.9230 - 1.8887 1.00 2691 142 0.1912 0.2203 REMARK 3 20 1.8887 - 1.8567 1.00 2639 139 0.1927 0.2359 REMARK 3 21 1.8567 - 1.8268 1.00 2652 140 0.1907 0.1927 REMARK 3 22 1.8268 - 1.7987 1.00 2623 138 0.1970 0.2208 REMARK 3 23 1.7987 - 1.7722 1.00 2682 141 0.2146 0.2527 REMARK 3 24 1.7722 - 1.7473 1.00 2639 139 0.2232 0.2447 REMARK 3 25 1.7473 - 1.7236 1.00 2665 140 0.2325 0.2997 REMARK 3 26 1.7236 - 1.7013 1.00 2655 140 0.2360 0.2692 REMARK 3 27 1.7013 - 1.6800 1.00 2642 139 0.2375 0.2628 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4949 REMARK 3 ANGLE : 0.923 6764 REMARK 3 CHIRALITY : 0.054 741 REMARK 3 PLANARITY : 0.004 897 REMARK 3 DIHEDRAL : 11.444 1743 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 225:290 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0844 10.5082 59.2742 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.0892 REMARK 3 T33: 0.1288 T12: 0.0004 REMARK 3 T13: 0.0030 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.9292 L22: 0.9220 REMARK 3 L33: 0.8259 L12: -0.0245 REMARK 3 L13: 0.0950 L23: 0.2509 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: 0.0413 S13: -0.0404 REMARK 3 S21: 0.0168 S22: 0.0076 S23: 0.1031 REMARK 3 S31: -0.0058 S32: -0.0491 S33: 0.0197 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 330:453 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3454 21.2622 74.3510 REMARK 3 T TENSOR REMARK 3 T11: 0.1527 T22: 0.1308 REMARK 3 T33: 0.1447 T12: 0.0396 REMARK 3 T13: 0.0348 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.3656 L22: 1.0724 REMARK 3 L33: 0.7455 L12: -0.1815 REMARK 3 L13: 0.2771 L23: 0.0588 REMARK 3 S TENSOR REMARK 3 S11: -0.1036 S12: -0.1955 S13: 0.1553 REMARK 3 S21: 0.2147 S22: 0.0719 S23: 0.1303 REMARK 3 S31: -0.1054 S32: -0.0764 S33: 0.0295 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 454:565 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1607 1.5064 53.5812 REMARK 3 T TENSOR REMARK 3 T11: 0.0989 T22: 0.1396 REMARK 3 T33: 0.1856 T12: -0.0138 REMARK 3 T13: 0.0009 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 1.0116 L22: 0.9923 REMARK 3 L33: 1.1603 L12: -0.1307 REMARK 3 L13: 0.0232 L23: 0.1795 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: 0.1890 S13: -0.1711 REMARK 3 S21: -0.0794 S22: -0.0412 S23: 0.1814 REMARK 3 S31: 0.0939 S32: -0.1352 S33: 0.0311 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 225:290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4696 11.3528 59.4108 REMARK 3 T TENSOR REMARK 3 T11: 0.0691 T22: 0.0909 REMARK 3 T33: 0.1097 T12: 0.0027 REMARK 3 T13: -0.0020 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.8131 L22: 1.1807 REMARK 3 L33: 0.9740 L12: -0.0281 REMARK 3 L13: -0.3217 L23: -0.2765 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: 0.0024 S13: 0.0660 REMARK 3 S21: 0.0044 S22: 0.0012 S23: -0.1035 REMARK 3 S31: 0.0102 S32: 0.0211 S33: 0.0235 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 328:453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3984 0.7904 74.7977 REMARK 3 T TENSOR REMARK 3 T11: 0.1481 T22: 0.1239 REMARK 3 T33: 0.1056 T12: 0.0337 REMARK 3 T13: -0.0158 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.3679 L22: 1.1738 REMARK 3 L33: 0.8701 L12: -0.0919 REMARK 3 L13: -0.3552 L23: -0.1061 REMARK 3 S TENSOR REMARK 3 S11: -0.0943 S12: -0.1606 S13: -0.1314 REMARK 3 S21: 0.2200 S22: 0.0454 S23: -0.0756 REMARK 3 S31: 0.0916 S32: 0.0455 S33: 0.0482 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 454:518 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7766 17.7065 57.6130 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.0869 REMARK 3 T33: 0.1314 T12: 0.0041 REMARK 3 T13: 0.0030 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.7283 L22: 0.8432 REMARK 3 L33: 1.6871 L12: -0.1501 REMARK 3 L13: -0.1122 L23: 0.1500 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: 0.0482 S13: 0.1266 REMARK 3 S21: -0.0021 S22: 0.0007 S23: -0.0985 REMARK 3 S31: -0.0290 S32: 0.0253 S33: 0.0240 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 519:538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3291 21.9421 48.7977 REMARK 3 T TENSOR REMARK 3 T11: 0.0903 T22: 0.1149 REMARK 3 T33: 0.1464 T12: -0.0211 REMARK 3 T13: 0.0184 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.5797 L22: 2.4962 REMARK 3 L33: 3.2002 L12: 0.3615 REMARK 3 L13: 0.4677 L23: -0.6858 REMARK 3 S TENSOR REMARK 3 S11: -0.0455 S12: 0.1111 S13: 0.1974 REMARK 3 S21: -0.1339 S22: -0.0202 S23: -0.1330 REMARK 3 S31: -0.1148 S32: 0.1239 S33: 0.0505 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 539:565 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1282 24.5788 47.6624 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1250 REMARK 3 T33: 0.1463 T12: -0.0020 REMARK 3 T13: 0.0035 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 1.7660 L22: 1.6654 REMARK 3 L33: 0.7827 L12: -0.0961 REMARK 3 L13: 0.0615 L23: 0.3749 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.2219 S13: 0.2110 REMARK 3 S21: -0.1537 S22: -0.0364 S23: -0.1091 REMARK 3 S31: -0.0482 S32: 0.0712 S33: 0.0223 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2844 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979701 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83120 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 49.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, GLYCEROL, 2-PROPANOL, SODIUM REMARK 280 CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.69000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 297 REMARK 465 GLY A 298 REMARK 465 ALA A 299 REMARK 465 PRO A 300 REMARK 465 ALA A 301 REMARK 465 LEU A 302 REMARK 465 THR A 303 REMARK 465 GLU A 304 REMARK 465 GLU A 305 REMARK 465 MET A 306 REMARK 465 PRO A 307 REMARK 465 PRO A 308 REMARK 465 LEU A 309 REMARK 465 GLU A 310 REMARK 465 ASP A 311 REMARK 465 GLU A 312 REMARK 465 VAL A 313 REMARK 465 ALA A 314 REMARK 465 ASP A 315 REMARK 465 GLY A 316 REMARK 465 ALA A 317 REMARK 465 ALA A 318 REMARK 465 ALA A 319 REMARK 465 THR A 320 REMARK 465 TYR A 321 REMARK 465 THR A 322 REMARK 465 LEU A 323 REMARK 465 ALA A 324 REMARK 465 ARG A 325 REMARK 465 ALA A 326 REMARK 465 ARG B 297 REMARK 465 GLY B 298 REMARK 465 ALA B 299 REMARK 465 PRO B 300 REMARK 465 ALA B 301 REMARK 465 LEU B 302 REMARK 465 THR B 303 REMARK 465 GLU B 304 REMARK 465 GLU B 305 REMARK 465 MET B 306 REMARK 465 PRO B 307 REMARK 465 PRO B 308 REMARK 465 LEU B 309 REMARK 465 GLU B 310 REMARK 465 ASP B 311 REMARK 465 GLU B 312 REMARK 465 VAL B 313 REMARK 465 ALA B 314 REMARK 465 ASP B 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 GLN A 257 CG CD OE1 NE2 REMARK 470 ARG B 325 CD NE CZ NH1 NH2 REMARK 470 ARG B 457 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 260 30.34 -148.83 REMARK 500 ASP A 474 44.76 -144.91 REMARK 500 ASP A 547 34.08 -96.17 REMARK 500 HIS B 260 29.95 -149.71 REMARK 500 ASP B 474 44.74 -144.93 REMARK 500 ASP B 547 34.51 -96.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QUZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FELINE NOROVIRUS P DOMAIN REMARK 900 RELATED ID: 4QVA RELATED DB: PDB REMARK 900 UNLIGANDED CRYSTAL STRUCTURE OF FELINE NOROVIRUS P DOMAIN CO- REMARK 900 CRYSTALLIZED WITH N-GLYCOLYLNEURAMINIC ACID DBREF 4QV2 A 225 565 UNP H8YRY9 H8YRY9_9CALI 225 565 DBREF 4QV2 B 225 565 UNP H8YRY9 H8YRY9_9CALI 225 565 SEQRES 1 A 341 VAL SER PHE SER VAL PRO GLY LEU VAL VAL GLU ASP MET SEQRES 2 A 341 SER ASN SER ARG TRP PRO ALA GLN ILE ASN GLY LEU VAL SEQRES 3 A 341 VAL ARG GLY ASN GLU ALA GLN VAL VAL HIS PHE GLN ASN SEQRES 4 A 341 GLY ARG CYS THR THR GLU GLY THR LEU LEU GLY THR THR SEQRES 5 A 341 THR LEU SER ILE ASN SER ILE CYS GLY LEU ARG GLY LEU SEQRES 6 A 341 SER VAL SER GLN ALA SER VAL ARG GLY ALA PRO ALA LEU SEQRES 7 A 341 THR GLU GLU MET PRO PRO LEU GLU ASP GLU VAL ALA ASP SEQRES 8 A 341 GLY ALA ALA ALA THR TYR THR LEU ALA ARG ALA ALA ASP SEQRES 9 A 341 THR THR LEU TRP LEU ARG VAL GLU GLU PRO ASP GLY ARG SEQRES 10 A 341 PRO TYR ASP ILE PHE GLY ASP GLN PRO ALA PRO LEU GLY SEQRES 11 A 341 THR PRO ASP PHE THR ALA VAL ILE VAL GLY THR ALA ILE SEQRES 12 A 341 ARG PRO ARG THR ALA SER GLY ALA TYR LEU HIS ASP ALA SEQRES 13 A 341 TYR VAL ASP THR THR PRO GLY ASP ALA ASP PHE THR PRO SEQRES 14 A 341 SER THR GLY ASN THR LYS ILE VAL LEU ARG GLY GLY GLY SEQRES 15 A 341 SER GLY HIS VAL GLY GLN GLY HIS TYR TRP GLN PHE ARG SEQRES 16 A 341 PRO ILE ALA VAL GLU GLY GLY GLY SER ARG PRO GLN TYR SEQRES 17 A 341 GLN GLU TYR ASN LEU PRO ASP TYR ALA GLY PRO THR ALA SEQRES 18 A 341 SER ASN HIS ASP LEU ALA PRO PRO VAL ALA PRO ARG MET SEQRES 19 A 341 PRO GLY GLU LEU LEU LEU LEU PHE GLU SER ASP MET PRO SEQRES 20 A 341 VAL TRP ASP ASN GLY ALA GLY ALA ALA PRO ALA GLN LYS SEQRES 21 A 341 ILE HIS CYS LEU LEU PRO ASN GLU PHE ILE THR HIS LEU SEQRES 22 A 341 PHE ASP LEU GLN ALA PRO ALA LEU ALA GLU ALA ALA LEU SEQRES 23 A 341 LEU ARG TYR VAL HIS PRO ASP SER GLY ARG THR LEU PHE SEQRES 24 A 341 GLU CYS LYS LEU TYR ARG GLU GLY TYR MET VAL VAL ALA SEQRES 25 A 341 ALA PRO ALA GLY ARG LEU ASN PHE PRO LEU ASP GLY TYR SEQRES 26 A 341 PHE ARG PHE ASP SER TRP VAL SER ALA PHE TYR ILE LEU SEQRES 27 A 341 SER PRO VAL SEQRES 1 B 341 VAL SER PHE SER VAL PRO GLY LEU VAL VAL GLU ASP MET SEQRES 2 B 341 SER ASN SER ARG TRP PRO ALA GLN ILE ASN GLY LEU VAL SEQRES 3 B 341 VAL ARG GLY ASN GLU ALA GLN VAL VAL HIS PHE GLN ASN SEQRES 4 B 341 GLY ARG CYS THR THR GLU GLY THR LEU LEU GLY THR THR SEQRES 5 B 341 THR LEU SER ILE ASN SER ILE CYS GLY LEU ARG GLY LEU SEQRES 6 B 341 SER VAL SER GLN ALA SER VAL ARG GLY ALA PRO ALA LEU SEQRES 7 B 341 THR GLU GLU MET PRO PRO LEU GLU ASP GLU VAL ALA ASP SEQRES 8 B 341 GLY ALA ALA ALA THR TYR THR LEU ALA ARG ALA ALA ASP SEQRES 9 B 341 THR THR LEU TRP LEU ARG VAL GLU GLU PRO ASP GLY ARG SEQRES 10 B 341 PRO TYR ASP ILE PHE GLY ASP GLN PRO ALA PRO LEU GLY SEQRES 11 B 341 THR PRO ASP PHE THR ALA VAL ILE VAL GLY THR ALA ILE SEQRES 12 B 341 ARG PRO ARG THR ALA SER GLY ALA TYR LEU HIS ASP ALA SEQRES 13 B 341 TYR VAL ASP THR THR PRO GLY ASP ALA ASP PHE THR PRO SEQRES 14 B 341 SER THR GLY ASN THR LYS ILE VAL LEU ARG GLY GLY GLY SEQRES 15 B 341 SER GLY HIS VAL GLY GLN GLY HIS TYR TRP GLN PHE ARG SEQRES 16 B 341 PRO ILE ALA VAL GLU GLY GLY GLY SER ARG PRO GLN TYR SEQRES 17 B 341 GLN GLU TYR ASN LEU PRO ASP TYR ALA GLY PRO THR ALA SEQRES 18 B 341 SER ASN HIS ASP LEU ALA PRO PRO VAL ALA PRO ARG MET SEQRES 19 B 341 PRO GLY GLU LEU LEU LEU LEU PHE GLU SER ASP MET PRO SEQRES 20 B 341 VAL TRP ASP ASN GLY ALA GLY ALA ALA PRO ALA GLN LYS SEQRES 21 B 341 ILE HIS CYS LEU LEU PRO ASN GLU PHE ILE THR HIS LEU SEQRES 22 B 341 PHE ASP LEU GLN ALA PRO ALA LEU ALA GLU ALA ALA LEU SEQRES 23 B 341 LEU ARG TYR VAL HIS PRO ASP SER GLY ARG THR LEU PHE SEQRES 24 B 341 GLU CYS LYS LEU TYR ARG GLU GLY TYR MET VAL VAL ALA SEQRES 25 B 341 ALA PRO ALA GLY ARG LEU ASN PHE PRO LEU ASP GLY TYR SEQRES 26 B 341 PHE ARG PHE ASP SER TRP VAL SER ALA PHE TYR ILE LEU SEQRES 27 B 341 SER PRO VAL HET EDO A 601 4 HET EDO A 602 4 HET EDO B 601 4 HET EDO B 602 4 HET EDO B 603 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *765(H2 O) HELIX 1 1 VAL A 233 MET A 237 5 5 HELIX 2 2 SER A 279 ILE A 283 5 5 HELIX 3 3 PRO A 393 THR A 395 5 3 HELIX 4 4 PRO A 490 GLN A 501 1 12 HELIX 5 5 VAL B 233 MET B 237 5 5 HELIX 6 6 SER B 279 ILE B 283 5 5 HELIX 7 7 ALA B 317 ALA B 327 1 11 HELIX 8 8 PRO B 393 THR B 395 5 3 HELIX 9 9 PRO B 490 GLN B 501 1 12 SHEET 1 A 4 GLN A 483 CYS A 487 0 SHEET 2 A 4 LEU A 462 MET A 470 -1 N PHE A 466 O CYS A 487 SHEET 3 A 4 GLY A 248 ARG A 252 -1 N VAL A 250 O LEU A 465 SHEET 4 A 4 GLY A 540 ARG A 541 -1 O GLY A 540 N VAL A 251 SHEET 1 B 6 GLN A 483 CYS A 487 0 SHEET 2 B 6 LEU A 462 MET A 470 -1 N PHE A 466 O CYS A 487 SHEET 3 B 6 TYR A 532 VAL A 535 -1 O MET A 533 N LEU A 464 SHEET 4 B 6 ARG A 520 TYR A 528 -1 N TYR A 528 O TYR A 532 SHEET 5 B 6 ALA A 508 HIS A 515 -1 N TYR A 513 O PHE A 523 SHEET 6 B 6 TYR A 549 VAL A 556 -1 O TYR A 549 N VAL A 514 SHEET 1 C 6 PHE A 391 THR A 392 0 SHEET 2 C 6 ASN A 397 LEU A 402 -1 N ASN A 397 O THR A 392 SHEET 3 C 6 THR A 329 VAL A 335 -1 N LEU A 331 O ILE A 400 SHEET 4 C 6 LEU A 286 VAL A 291 -1 N LEU A 289 O ARG A 334 SHEET 5 C 6 TYR A 415 GLU A 424 -1 O PHE A 418 N LEU A 286 SHEET 6 C 6 VAL A 472 TRP A 473 1 O TRP A 473 N VAL A 423 SHEET 1 D 6 PHE A 391 THR A 392 0 SHEET 2 D 6 ASN A 397 LEU A 402 -1 N ASN A 397 O THR A 392 SHEET 3 D 6 TYR A 376 ASP A 383 -1 N TYR A 381 O VAL A 401 SHEET 4 D 6 VAL A 361 ARG A 368 -1 N ARG A 368 O TYR A 376 SHEET 5 D 6 TYR A 415 GLU A 424 -1 O ILE A 421 N VAL A 363 SHEET 6 D 6 VAL A 472 TRP A 473 1 O TRP A 473 N VAL A 423 SHEET 1 E 4 GLN B 483 CYS B 487 0 SHEET 2 E 4 LEU B 462 MET B 470 -1 N PHE B 466 O CYS B 487 SHEET 3 E 4 GLY B 248 ARG B 252 -1 N VAL B 250 O LEU B 465 SHEET 4 E 4 GLY B 540 ARG B 541 -1 O GLY B 540 N VAL B 251 SHEET 1 F 6 GLN B 483 CYS B 487 0 SHEET 2 F 6 LEU B 462 MET B 470 -1 N PHE B 466 O CYS B 487 SHEET 3 F 6 TYR B 532 VAL B 535 -1 O MET B 533 N LEU B 464 SHEET 4 F 6 ARG B 520 TYR B 528 -1 N TYR B 528 O TYR B 532 SHEET 5 F 6 ALA B 508 HIS B 515 -1 N TYR B 513 O PHE B 523 SHEET 6 F 6 TYR B 549 VAL B 556 -1 O TYR B 549 N VAL B 514 SHEET 1 G 6 PHE B 391 THR B 392 0 SHEET 2 G 6 ASN B 397 LEU B 402 -1 N ASN B 397 O THR B 392 SHEET 3 G 6 THR B 329 VAL B 335 -1 N LEU B 331 O ILE B 400 SHEET 4 G 6 LEU B 286 VAL B 291 -1 N LEU B 289 O ARG B 334 SHEET 5 G 6 TYR B 415 GLU B 424 -1 O PHE B 418 N LEU B 286 SHEET 6 G 6 VAL B 472 TRP B 473 1 O TRP B 473 N VAL B 423 SHEET 1 H 6 PHE B 391 THR B 392 0 SHEET 2 H 6 ASN B 397 LEU B 402 -1 N ASN B 397 O THR B 392 SHEET 3 H 6 TYR B 376 ASP B 383 -1 N TYR B 381 O VAL B 401 SHEET 4 H 6 VAL B 361 ARG B 368 -1 N ARG B 368 O TYR B 376 SHEET 5 H 6 TYR B 415 GLU B 424 -1 O ILE B 421 N VAL B 363 SHEET 6 H 6 VAL B 472 TRP B 473 1 O TRP B 473 N VAL B 423 SITE 1 AC1 7 LEU A 272 LEU A 273 GLY A 274 THR A 276 SITE 2 AC1 7 LEU A 353 HOH A 807 HOH A 944 SITE 1 AC2 4 ARG A 403 GLU A 424 HOH A 856 HOH A 901 SITE 1 AC3 7 LEU B 272 LEU B 273 GLY B 274 THR B 276 SITE 2 AC3 7 LEU B 353 HOH B 804 HOH B 871 SITE 1 AC4 10 LEU A 377 HOH A 906 HOH A 927 VAL B 363 SITE 2 AC4 10 GLY B 364 ASP B 379 ILE B 421 TRP B 473 SITE 3 AC4 10 HOH B 868 HOH B 937 SITE 1 AC5 4 TYR B 381 ARG B 403 GLU B 424 HOH B 846 CRYST1 57.480 99.380 59.890 90.00 97.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017397 0.000000 0.002302 0.00000 SCALE2 0.000000 0.010062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016843 0.00000