HEADER VIRAL PROTEIN 14-JUL-14 4QVA TITLE UNLIGANDED CRYSTAL STRUCTURE OF FELINE NOROVIRUS P DOMAIN CO- TITLE 2 CRYSTALLIZED WITH N-GLYCOLYLNEURAMINIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN (UNP RESIDUES 225-565); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS CAT/GIV.2/CU081210E/USA/2010; SOURCE 3 ORGANISM_TAXID: 1160949; SOURCE 4 GENE: JF781268; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS FELINE NOROVIRUS, VIRAL CAPSID PROTEIN, P DOMAIN, PROTRUDING DOMAIN, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,G.S.HANSMAN REVDAT 3 20-MAR-24 4QVA 1 REMARK REVDAT 2 04-MAR-15 4QVA 1 JRNL REVDAT 1 19-NOV-14 4QVA 0 JRNL AUTH B.K.SINGH,S.GLATT,J.L.FERRER,A.D.KOROMYSLOVA,M.M.LEUTHOLD, JRNL AUTH 2 J.DUNDER,G.S.HANSMAN JRNL TITL STRUCTURAL ANALYSIS OF A FELINE NOROVIRUS PROTRUDING DOMAIN. JRNL REF VIROLOGY V. 474 181 2015 JRNL REFN ISSN 0042-6822 JRNL PMID 25463616 JRNL DOI 10.1016/J.VIROL.2014.10.028 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 35321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5318 - 5.1212 0.85 2423 125 0.1662 0.1519 REMARK 3 2 5.1212 - 4.0667 0.89 2470 130 0.1429 0.1767 REMARK 3 3 4.0667 - 3.5532 0.90 2533 134 0.1662 0.1897 REMARK 3 4 3.5532 - 3.2286 0.92 2547 133 0.1754 0.1945 REMARK 3 5 3.2286 - 2.9973 0.93 2561 135 0.1989 0.2358 REMARK 3 6 2.9973 - 2.8207 0.93 2610 137 0.2102 0.2639 REMARK 3 7 2.8207 - 2.6794 0.94 2605 136 0.2214 0.2901 REMARK 3 8 2.6794 - 2.5628 0.95 2651 138 0.2284 0.2598 REMARK 3 9 2.5628 - 2.4642 0.95 2630 138 0.2381 0.3188 REMARK 3 10 2.4642 - 2.3792 0.95 2625 138 0.2363 0.2725 REMARK 3 11 2.3792 - 2.3048 0.94 2575 136 0.2435 0.3087 REMARK 3 12 2.3048 - 2.2389 0.96 2652 139 0.2364 0.2560 REMARK 3 13 2.2389 - 2.1800 0.96 2679 141 0.2577 0.2882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4856 REMARK 3 ANGLE : 0.992 6645 REMARK 3 CHIRALITY : 0.041 726 REMARK 3 PLANARITY : 0.006 883 REMARK 3 DIHEDRAL : 13.064 1719 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 225:290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8957 -11.8919 129.3627 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.1390 REMARK 3 T33: 0.2040 T12: -0.0042 REMARK 3 T13: 0.0045 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.4843 L22: 0.7627 REMARK 3 L33: 0.6836 L12: -0.0836 REMARK 3 L13: -0.1061 L23: -0.1139 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: 0.0440 S13: -0.0185 REMARK 3 S21: 0.0550 S22: 0.0156 S23: -0.0420 REMARK 3 S31: 0.0456 S32: -0.0029 S33: 0.0264 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 291:453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9959 -22.9620 144.9696 REMARK 3 T TENSOR REMARK 3 T11: 0.2252 T22: 0.2066 REMARK 3 T33: 0.2267 T12: 0.0347 REMARK 3 T13: -0.0229 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.3515 L22: 1.0581 REMARK 3 L33: 0.7170 L12: 0.2172 REMARK 3 L13: -0.1915 L23: -0.1543 REMARK 3 S TENSOR REMARK 3 S11: -0.0594 S12: -0.1501 S13: -0.2533 REMARK 3 S21: 0.2185 S22: 0.0276 S23: -0.1749 REMARK 3 S31: 0.0552 S32: 0.0623 S33: 0.0285 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 454:565 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8089 -2.9318 123.5611 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.1639 REMARK 3 T33: 0.2189 T12: -0.0218 REMARK 3 T13: -0.0048 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.6601 L22: 0.7852 REMARK 3 L33: 0.9923 L12: -0.0550 REMARK 3 L13: -0.0092 L23: -0.2515 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: 0.1204 S13: 0.0073 REMARK 3 S21: -0.0653 S22: -0.0071 S23: -0.1407 REMARK 3 S31: -0.0868 S32: 0.0443 S33: 0.0014 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 225:290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3459 -12.6894 129.3477 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.1735 REMARK 3 T33: 0.2454 T12: -0.0074 REMARK 3 T13: -0.0063 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.5687 L22: 0.9687 REMARK 3 L33: 0.6366 L12: -0.1329 REMARK 3 L13: 0.1505 L23: 0.2795 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: 0.0372 S13: 0.0229 REMARK 3 S21: 0.0475 S22: 0.0322 S23: 0.1526 REMARK 3 S31: -0.0220 S32: -0.0112 S33: 0.0187 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 291:453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2428 -1.5520 144.9767 REMARK 3 T TENSOR REMARK 3 T11: 0.2222 T22: 0.2292 REMARK 3 T33: 0.2212 T12: 0.0247 REMARK 3 T13: 0.0265 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 1.2806 L22: 1.0339 REMARK 3 L33: 0.4811 L12: -0.0764 REMARK 3 L13: 0.1365 L23: 0.0769 REMARK 3 S TENSOR REMARK 3 S11: -0.0786 S12: -0.1739 S13: 0.0724 REMARK 3 S21: 0.2427 S22: 0.0329 S23: 0.1588 REMARK 3 S31: -0.0124 S32: -0.0379 S33: 0.0478 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 454:565 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4023 -21.6636 123.5210 REMARK 3 T TENSOR REMARK 3 T11: 0.1385 T22: 0.1568 REMARK 3 T33: 0.2652 T12: -0.0001 REMARK 3 T13: -0.0105 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.8171 L22: 1.0773 REMARK 3 L33: 0.7783 L12: -0.1080 REMARK 3 L13: -0.0623 L23: 0.3838 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.1024 S13: -0.2243 REMARK 3 S21: -0.1299 S22: -0.0467 S23: 0.1901 REMARK 3 S31: 0.0733 S32: -0.0425 S33: 0.0310 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 2845 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978131 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, GLYCEROL, 2-PROPANOL, SODIUM REMARK 280 CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.69000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 297 REMARK 465 GLY A 298 REMARK 465 ALA A 299 REMARK 465 PRO A 300 REMARK 465 ALA A 301 REMARK 465 LEU A 302 REMARK 465 THR A 303 REMARK 465 GLU A 304 REMARK 465 GLU A 305 REMARK 465 MET A 306 REMARK 465 PRO A 307 REMARK 465 PRO A 308 REMARK 465 LEU A 309 REMARK 465 GLU A 310 REMARK 465 ASP A 311 REMARK 465 GLU A 312 REMARK 465 VAL A 313 REMARK 465 ALA A 314 REMARK 465 ASP A 315 REMARK 465 GLY A 316 REMARK 465 ALA A 317 REMARK 465 ALA A 318 REMARK 465 ALA A 319 REMARK 465 THR A 320 REMARK 465 TYR A 321 REMARK 465 THR A 322 REMARK 465 LEU A 323 REMARK 465 ALA A 324 REMARK 465 ARG A 325 REMARK 465 ALA A 326 REMARK 465 ALA A 327 REMARK 465 ARG B 297 REMARK 465 GLY B 298 REMARK 465 ALA B 299 REMARK 465 PRO B 300 REMARK 465 ALA B 301 REMARK 465 LEU B 302 REMARK 465 THR B 303 REMARK 465 GLU B 304 REMARK 465 GLU B 305 REMARK 465 MET B 306 REMARK 465 PRO B 307 REMARK 465 PRO B 308 REMARK 465 LEU B 309 REMARK 465 GLU B 310 REMARK 465 ASP B 311 REMARK 465 GLU B 312 REMARK 465 VAL B 313 REMARK 465 ALA B 314 REMARK 465 ASP B 315 REMARK 465 GLY B 316 REMARK 465 ALA B 317 REMARK 465 ALA B 318 REMARK 465 ALA B 319 REMARK 465 THR B 320 REMARK 465 TYR B 321 REMARK 465 THR B 322 REMARK 465 LEU B 323 REMARK 465 ALA B 324 REMARK 465 ARG B 325 REMARK 465 ALA B 326 REMARK 465 ALA B 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 GLN A 293 CG CD OE1 NE2 REMARK 470 GLU B 255 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 474 34.77 -141.43 REMARK 500 ASP A 547 35.73 -96.28 REMARK 500 HIS B 260 37.09 -140.57 REMARK 500 ASP B 474 34.38 -141.95 REMARK 500 ASP B 547 36.41 -95.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QV2 RELATED DB: PDB REMARK 900 UNLIGANDED CRYSTAL STRUCTURE OF FELINE NOROVIRUS P DOMAIN CO- REMARK 900 CRYSTALLIZED WITH HBGA A-TRISACCHARIDE REMARK 900 RELATED ID: 4QUZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FELINE NOROVIRUS P DOMAIN DBREF 4QVA A 225 565 UNP H8YRY9 H8YRY9_9CALI 225 565 DBREF 4QVA B 225 565 UNP H8YRY9 H8YRY9_9CALI 225 565 SEQRES 1 A 341 VAL SER PHE SER VAL PRO GLY LEU VAL VAL GLU ASP MET SEQRES 2 A 341 SER ASN SER ARG TRP PRO ALA GLN ILE ASN GLY LEU VAL SEQRES 3 A 341 VAL ARG GLY ASN GLU ALA GLN VAL VAL HIS PHE GLN ASN SEQRES 4 A 341 GLY ARG CYS THR THR GLU GLY THR LEU LEU GLY THR THR SEQRES 5 A 341 THR LEU SER ILE ASN SER ILE CYS GLY LEU ARG GLY LEU SEQRES 6 A 341 SER VAL SER GLN ALA SER VAL ARG GLY ALA PRO ALA LEU SEQRES 7 A 341 THR GLU GLU MET PRO PRO LEU GLU ASP GLU VAL ALA ASP SEQRES 8 A 341 GLY ALA ALA ALA THR TYR THR LEU ALA ARG ALA ALA ASP SEQRES 9 A 341 THR THR LEU TRP LEU ARG VAL GLU GLU PRO ASP GLY ARG SEQRES 10 A 341 PRO TYR ASP ILE PHE GLY ASP GLN PRO ALA PRO LEU GLY SEQRES 11 A 341 THR PRO ASP PHE THR ALA VAL ILE VAL GLY THR ALA ILE SEQRES 12 A 341 ARG PRO ARG THR ALA SER GLY ALA TYR LEU HIS ASP ALA SEQRES 13 A 341 TYR VAL ASP THR THR PRO GLY ASP ALA ASP PHE THR PRO SEQRES 14 A 341 SER THR GLY ASN THR LYS ILE VAL LEU ARG GLY GLY GLY SEQRES 15 A 341 SER GLY HIS VAL GLY GLN GLY HIS TYR TRP GLN PHE ARG SEQRES 16 A 341 PRO ILE ALA VAL GLU GLY GLY GLY SER ARG PRO GLN TYR SEQRES 17 A 341 GLN GLU TYR ASN LEU PRO ASP TYR ALA GLY PRO THR ALA SEQRES 18 A 341 SER ASN HIS ASP LEU ALA PRO PRO VAL ALA PRO ARG MET SEQRES 19 A 341 PRO GLY GLU LEU LEU LEU LEU PHE GLU SER ASP MET PRO SEQRES 20 A 341 VAL TRP ASP ASN GLY ALA GLY ALA ALA PRO ALA GLN LYS SEQRES 21 A 341 ILE HIS CYS LEU LEU PRO ASN GLU PHE ILE THR HIS LEU SEQRES 22 A 341 PHE ASP LEU GLN ALA PRO ALA LEU ALA GLU ALA ALA LEU SEQRES 23 A 341 LEU ARG TYR VAL HIS PRO ASP SER GLY ARG THR LEU PHE SEQRES 24 A 341 GLU CYS LYS LEU TYR ARG GLU GLY TYR MET VAL VAL ALA SEQRES 25 A 341 ALA PRO ALA GLY ARG LEU ASN PHE PRO LEU ASP GLY TYR SEQRES 26 A 341 PHE ARG PHE ASP SER TRP VAL SER ALA PHE TYR ILE LEU SEQRES 27 A 341 SER PRO VAL SEQRES 1 B 341 VAL SER PHE SER VAL PRO GLY LEU VAL VAL GLU ASP MET SEQRES 2 B 341 SER ASN SER ARG TRP PRO ALA GLN ILE ASN GLY LEU VAL SEQRES 3 B 341 VAL ARG GLY ASN GLU ALA GLN VAL VAL HIS PHE GLN ASN SEQRES 4 B 341 GLY ARG CYS THR THR GLU GLY THR LEU LEU GLY THR THR SEQRES 5 B 341 THR LEU SER ILE ASN SER ILE CYS GLY LEU ARG GLY LEU SEQRES 6 B 341 SER VAL SER GLN ALA SER VAL ARG GLY ALA PRO ALA LEU SEQRES 7 B 341 THR GLU GLU MET PRO PRO LEU GLU ASP GLU VAL ALA ASP SEQRES 8 B 341 GLY ALA ALA ALA THR TYR THR LEU ALA ARG ALA ALA ASP SEQRES 9 B 341 THR THR LEU TRP LEU ARG VAL GLU GLU PRO ASP GLY ARG SEQRES 10 B 341 PRO TYR ASP ILE PHE GLY ASP GLN PRO ALA PRO LEU GLY SEQRES 11 B 341 THR PRO ASP PHE THR ALA VAL ILE VAL GLY THR ALA ILE SEQRES 12 B 341 ARG PRO ARG THR ALA SER GLY ALA TYR LEU HIS ASP ALA SEQRES 13 B 341 TYR VAL ASP THR THR PRO GLY ASP ALA ASP PHE THR PRO SEQRES 14 B 341 SER THR GLY ASN THR LYS ILE VAL LEU ARG GLY GLY GLY SEQRES 15 B 341 SER GLY HIS VAL GLY GLN GLY HIS TYR TRP GLN PHE ARG SEQRES 16 B 341 PRO ILE ALA VAL GLU GLY GLY GLY SER ARG PRO GLN TYR SEQRES 17 B 341 GLN GLU TYR ASN LEU PRO ASP TYR ALA GLY PRO THR ALA SEQRES 18 B 341 SER ASN HIS ASP LEU ALA PRO PRO VAL ALA PRO ARG MET SEQRES 19 B 341 PRO GLY GLU LEU LEU LEU LEU PHE GLU SER ASP MET PRO SEQRES 20 B 341 VAL TRP ASP ASN GLY ALA GLY ALA ALA PRO ALA GLN LYS SEQRES 21 B 341 ILE HIS CYS LEU LEU PRO ASN GLU PHE ILE THR HIS LEU SEQRES 22 B 341 PHE ASP LEU GLN ALA PRO ALA LEU ALA GLU ALA ALA LEU SEQRES 23 B 341 LEU ARG TYR VAL HIS PRO ASP SER GLY ARG THR LEU PHE SEQRES 24 B 341 GLU CYS LYS LEU TYR ARG GLU GLY TYR MET VAL VAL ALA SEQRES 25 B 341 ALA PRO ALA GLY ARG LEU ASN PHE PRO LEU ASP GLY TYR SEQRES 26 B 341 PHE ARG PHE ASP SER TRP VAL SER ALA PHE TYR ILE LEU SEQRES 27 B 341 SER PRO VAL FORMUL 3 HOH *404(H2 O) HELIX 1 1 VAL A 233 MET A 237 5 5 HELIX 2 2 SER A 279 ILE A 283 5 5 HELIX 3 3 PRO A 393 THR A 395 5 3 HELIX 4 4 PRO A 490 GLN A 501 1 12 HELIX 5 5 PRO A 516 GLY A 519 5 4 HELIX 6 6 VAL B 233 MET B 237 5 5 HELIX 7 7 SER B 279 ILE B 283 5 5 HELIX 8 8 PRO B 393 THR B 395 5 3 HELIX 9 9 PRO B 490 GLN B 501 1 12 HELIX 10 10 PRO B 516 GLY B 519 5 4 SHEET 1 A 4 GLN A 483 CYS A 487 0 SHEET 2 A 4 GLU A 461 MET A 470 -1 N PHE A 466 O CYS A 487 SHEET 3 A 4 GLY A 248 ARG A 252 -1 N VAL A 250 O LEU A 465 SHEET 4 A 4 GLY A 540 ARG A 541 -1 O GLY A 540 N VAL A 251 SHEET 1 B 6 GLN A 483 CYS A 487 0 SHEET 2 B 6 GLU A 461 MET A 470 -1 N PHE A 466 O CYS A 487 SHEET 3 B 6 MET A 533 ALA A 536 -1 O VAL A 535 N LEU A 462 SHEET 4 B 6 ARG A 520 TYR A 528 -1 N LYS A 526 O VAL A 534 SHEET 5 B 6 ALA A 508 HIS A 515 -1 N ALA A 509 O LEU A 527 SHEET 6 B 6 TYR A 549 VAL A 556 -1 O TYR A 549 N VAL A 514 SHEET 1 C 6 PHE A 391 THR A 392 0 SHEET 2 C 6 ASN A 397 LEU A 402 -1 N ASN A 397 O THR A 392 SHEET 3 C 6 THR A 329 VAL A 335 -1 N LEU A 331 O ILE A 400 SHEET 4 C 6 LEU A 286 VAL A 291 -1 N LEU A 289 O ARG A 334 SHEET 5 C 6 TYR A 415 GLU A 424 -1 O PHE A 418 N LEU A 286 SHEET 6 C 6 VAL A 472 TRP A 473 1 O TRP A 473 N VAL A 423 SHEET 1 D 6 PHE A 391 THR A 392 0 SHEET 2 D 6 ASN A 397 LEU A 402 -1 N ASN A 397 O THR A 392 SHEET 3 D 6 TYR A 376 ASP A 383 -1 N TYR A 381 O VAL A 401 SHEET 4 D 6 VAL A 361 ARG A 368 -1 N GLY A 364 O ALA A 380 SHEET 5 D 6 TYR A 415 GLU A 424 -1 O GLN A 417 N ILE A 367 SHEET 6 D 6 VAL A 472 TRP A 473 1 O TRP A 473 N VAL A 423 SHEET 1 E 4 GLN B 483 CYS B 487 0 SHEET 2 E 4 GLU B 461 MET B 470 -1 N PHE B 466 O CYS B 487 SHEET 3 E 4 GLY B 248 ARG B 252 -1 N GLY B 248 O GLU B 467 SHEET 4 E 4 GLY B 540 LEU B 542 -1 O GLY B 540 N VAL B 251 SHEET 1 F 6 GLN B 483 CYS B 487 0 SHEET 2 F 6 GLU B 461 MET B 470 -1 N PHE B 466 O CYS B 487 SHEET 3 F 6 TYR B 532 ALA B 536 -1 O MET B 533 N LEU B 464 SHEET 4 F 6 ARG B 520 TYR B 528 -1 N TYR B 528 O TYR B 532 SHEET 5 F 6 ALA B 508 HIS B 515 -1 N ALA B 509 O LEU B 527 SHEET 6 F 6 TYR B 549 VAL B 556 -1 O SER B 554 N LEU B 510 SHEET 1 G 6 PHE B 391 THR B 392 0 SHEET 2 G 6 ASN B 397 LEU B 402 -1 N ASN B 397 O THR B 392 SHEET 3 G 6 THR B 329 VAL B 335 -1 N THR B 329 O LEU B 402 SHEET 4 G 6 LEU B 286 VAL B 291 -1 N LEU B 289 O ARG B 334 SHEET 5 G 6 TYR B 415 GLU B 424 -1 O PHE B 418 N LEU B 286 SHEET 6 G 6 VAL B 472 TRP B 473 1 O TRP B 473 N VAL B 423 SHEET 1 H 6 PHE B 391 THR B 392 0 SHEET 2 H 6 ASN B 397 LEU B 402 -1 N ASN B 397 O THR B 392 SHEET 3 H 6 TYR B 376 ASP B 383 -1 N TYR B 381 O VAL B 401 SHEET 4 H 6 VAL B 361 ARG B 368 -1 N ARG B 368 O TYR B 376 SHEET 5 H 6 TYR B 415 GLU B 424 -1 O GLN B 417 N ILE B 367 SHEET 6 H 6 VAL B 472 TRP B 473 1 O TRP B 473 N VAL B 423 CRYST1 57.530 99.380 69.340 90.00 111.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017382 0.000000 0.006687 0.00000 SCALE2 0.000000 0.010062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015452 0.00000