HEADER SIGNALING PROTEIN 21-JUL-14 4QXK TITLE JOINT X-RAY/NEUTRON STRUCTURE OF PKGIBETA IN COMPLEX WITH CGMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CGK 1, CGK1, CGMP-DEPENDENT PROTEIN KINASE I, CGKI; COMPND 5 EC: 2.7.11.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKG1, PRKG1B, PRKGR1A, PRKGR1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLIC GMP (CGMP), TYPE I CGMP DEPENDENT PROTEIN KINASE (PKG I), KEYWDS 2 CYCLIC NUCLEOTIDE SELECTIVITY, SERINE/THREONINE PROTEIN KINASE, KEYWDS 3 SIGNAL TRANSDUCTION, SECOND MESSENGERS, HYDROGEN BONDING, SOLVENT KEYWDS 4 ACCESSIBILITY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR C.KIM,O.GERLITS,A.KOVALEVSKY,G.Y.HUANG REVDAT 3 28-FEB-24 4QXK 1 REMARK SEQADV LINK REVDAT 2 20-JUN-18 4QXK 1 REMARK REVDAT 1 12-NOV-14 4QXK 0 JRNL AUTH G.Y.HUANG,O.O.GERLITS,M.P.BLAKELEY,B.SANKARAN, JRNL AUTH 2 A.Y.KOVALEVSKY,C.KIM JRNL TITL NEUTRON DIFFRACTION REVEALS HYDROGEN BONDS CRITICAL FOR JRNL TITL 2 CGMP-SELECTIVE ACTIVATION: INSIGHTS FOR CGMP-DEPENDENT JRNL TITL 3 PROTEIN KINASE AGONIST DESIGN. JRNL REF BIOCHEMISTRY V. 53 6725 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 25271401 JRNL DOI 10.1021/BI501012V REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NCNS 1.0.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,MUSTYAKIMOV, REMARK 3 : AFONINE,LANGAN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.3 REMARK 3 NUMBER OF REFLECTIONS : 5552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 256 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 533 REMARK 3 BIN R VALUE (WORKING SET) : 0.4810 REMARK 3 BIN FREE R VALUE : 0.5080 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 23 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.106 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1003 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.120 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 17.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 8.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000086639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL3000 FOR X-RAY AND LAUEGEN REMARK 200 FOR NEUTRON REMARK 200 DATA SCALING SOFTWARE : HKL3000 FOR X-RAY AND LSCALE FOR REMARK 200 NEUTRON REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13053 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 10-MAY-13 REMARK 230 TEMPERATURE (KELVIN) : 293.0 REMARK 230 PH : 6.50 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : LADI-III REMARK 230 WAVELENGTH OR RANGE (A) : 2.8-4.0 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : SET OF COLLIMATORS REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : CYLINDRICAL NEUTRON IMAGE PLATE REMARK 230 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 FOR X-RAY, LAUEGEN FOR REMARK 230 NEUTRON REMARK 230 DATA SCALING SOFTWARE : HKL-3000 FOR X-RAY, LSCALE FOR REMARK 230 NEUTRON REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 5642 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 230 RESOLUTION RANGE LOW (A) : 40.000 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 82.7 REMARK 230 DATA REDUNDANCY : 4.000 REMARK 230 R MERGE (I) : 0.07000 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 13.8000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 230 COMPLETENESS FOR SHELL (%) : 66.7 REMARK 230 DATA REDUNDANCY IN SHELL : 2.90 REMARK 230 R MERGE FOR SHELL (I) : 0.19800 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : 4.900 REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : CNS REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M NA3CITRATE, PH 6.5 AND 0.2 M NAI REMARK 280 SOLUTIONS, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.43050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 24.37300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 24.37300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.21525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 24.37300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 24.37300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.64575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 24.37300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 24.37300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.21525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 24.37300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 24.37300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.64575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.43050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O DOD A1016 LIES ON A SPECIAL POSITION. REMARK 375 O DOD A1051 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 465 THR A 219 REMARK 465 GLY A 220 REMARK 465 LEU A 221 REMARK 465 ILE A 222 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 GLU A 352 REMARK 465 ASP A 353 REMARK 465 ALA A 354 REMARK 465 GLU A 355 REMARK 465 ALA A 356 REMARK 465 LYS A 357 REMARK 465 ALA A 358 REMARK 465 LYS A 359 REMARK 465 TYR A 360 REMARK 465 GLU A 361 REMARK 465 ALA A 362 REMARK 465 GLU A 363 REMARK 465 ALA A 364 REMARK 465 ALA A 365 REMARK 465 PHE A 366 REMARK 465 PHE A 367 REMARK 465 ALA A 368 REMARK 465 ASN A 369 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 D1 DOD A 1066 O DOD A 1073 1.38 REMARK 500 OE2 GLU A 307 DH TYR A 351 1.52 REMARK 500 OD1 ASP A 345 D1 DOD A 1089 1.57 REMARK 500 O DOD A 1009 D2 DOD A 1017 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASN A 259 D2 DOD A 1084 7545 1.41 REMARK 500 DD1 HIS A 338 O DOD A 1092 5555 1.55 REMARK 500 HD1 HIS A 338 O DOD A 1092 5555 1.55 REMARK 500 OE2 GLU A 226 D2 DOD A 1101 4544 1.56 REMARK 500 D2 DOD A 1027 O DOD A 1073 8555 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 259 104.94 -41.09 REMARK 500 ASP A 271 19.07 -140.00 REMARK 500 ASP A 314 33.34 -99.40 REMARK 500 GLU A 324 -171.90 -179.55 REMARK 500 ASN A 348 34.37 -89.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 308 O REMARK 620 2 GLN A 311 O 82.3 REMARK 620 3 GLU A 313 O 94.2 94.4 REMARK 620 4 DOD A1011 O 98.3 176.7 88.8 REMARK 620 5 DOD A1013 O 156.2 84.7 106.6 93.5 REMARK 620 6 DOD A1031 O 88.6 78.3 171.8 98.5 69.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 DBREF 4QXK A 219 369 UNP Q13976 KGP1_HUMAN 204 354 SEQADV 4QXK GLY A 217 UNP Q13976 EXPRESSION TAG SEQADV 4QXK SER A 218 UNP Q13976 EXPRESSION TAG SEQRES 1 A 153 GLY SER THR GLY LEU ILE LYS HIS THR GLU TYR MET GLU SEQRES 2 A 153 PHE LEU LYS SER VAL PRO THR PHE GLN SER LEU PRO GLU SEQRES 3 A 153 GLU ILE LEU SER LYS LEU ALA ASP VAL LEU GLU GLU THR SEQRES 4 A 153 HIS TYR GLU ASN GLY GLU TYR ILE ILE ARG GLN GLY ALA SEQRES 5 A 153 ARG GLY ASP THR PHE PHE ILE ILE SER LYS GLY THR VAL SEQRES 6 A 153 ASN VAL THR ARG GLU ASP SER PRO SER GLU ASP PRO VAL SEQRES 7 A 153 PHE LEU ARG THR LEU GLY LYS GLY ASP TRP PHE GLY GLU SEQRES 8 A 153 LYS ALA LEU GLN GLY GLU ASP VAL ARG THR ALA ASN VAL SEQRES 9 A 153 ILE ALA ALA GLU ALA VAL THR CYS LEU VAL ILE ASP ARG SEQRES 10 A 153 ASP SER PHE LYS HIS LEU ILE GLY GLY LEU ASP ASP VAL SEQRES 11 A 153 SER ASN LYS ALA TYR GLU ASP ALA GLU ALA LYS ALA LYS SEQRES 12 A 153 TYR GLU ALA GLU ALA ALA PHE PHE ALA ASN HET PCG A 401 34 HET NA A 402 1 HETNAM PCG CYCLIC GUANOSINE MONOPHOSPHATE HETNAM NA SODIUM ION FORMUL 2 PCG C10 H12 N5 O7 P FORMUL 3 NA NA 1+ FORMUL 4 DOD *111(D2 O) HELIX 1 1 LYS A 223 LYS A 232 1 10 HELIX 2 2 PRO A 241 LEU A 252 1 12 HELIX 3 3 GLU A 307 GLN A 311 5 5 HELIX 4 4 ARG A 333 ILE A 340 1 8 HELIX 5 5 LEU A 343 ASN A 348 1 6 SHEET 1 A 4 GLU A 253 TYR A 257 0 SHEET 2 A 4 VAL A 326 ASP A 332 -1 O VAL A 330 N GLU A 253 SHEET 3 A 4 THR A 272 LYS A 278 -1 N PHE A 273 O ILE A 331 SHEET 4 A 4 TRP A 304 PHE A 305 -1 O PHE A 305 N PHE A 274 SHEET 1 B 4 TYR A 262 ILE A 264 0 SHEET 2 B 4 ASN A 319 ALA A 322 -1 O VAL A 320 N ILE A 263 SHEET 3 B 4 THR A 280 ARG A 285 -1 N ASN A 282 O ILE A 321 SHEET 4 B 4 VAL A 294 GLY A 300 -1 O LEU A 296 N VAL A 283 LINK O LYS A 308 NA NA A 402 1555 1555 2.49 LINK O GLN A 311 NA NA A 402 1555 1555 2.41 LINK O GLU A 313 NA NA A 402 1555 1555 2.52 LINK NA NA A 402 O DOD A1011 1555 1555 2.41 LINK NA NA A 402 O DOD A1013 1555 1555 2.68 LINK NA NA A 402 O DOD A1031 1555 1555 2.63 SITE 1 AC1 13 ARG A 285 LEU A 296 ARG A 297 PHE A 305 SITE 2 AC1 13 GLY A 306 GLU A 307 LYS A 308 ALA A 309 SITE 3 AC1 13 ARG A 316 THR A 317 ALA A 318 TYR A 351 SITE 4 AC1 13 DOD A1045 SITE 1 AC2 6 LYS A 308 GLN A 311 GLU A 313 DOD A1011 SITE 2 AC2 6 DOD A1013 DOD A1031 CRYST1 48.746 48.746 104.861 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020515 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009536 0.00000