HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-JUL-14 4QXS TITLE CRYSTAL STRUCTURE OF HUMAN FPPS IN COMPLEX WITH WC01088 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10, 2.5.1.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PARK,M.ZIELINSKI,C.WEILING,Y.S.TSANTRIZOS,A.M.BERGHUIS REVDAT 3 20-SEP-23 4QXS 1 REMARK SEQADV REVDAT 2 04-MAR-15 4QXS 1 JRNL REVDAT 1 25-FEB-15 4QXS 0 JRNL AUTH D.GRITZALIS,J.PARK,W.CHIU,H.CHO,Y.S.LIN,J.W.DE SCHUTTER, JRNL AUTH 2 C.M.LACBAY,M.ZIELINSKI,A.M.BERGHUIS,Y.S.TSANTRIZOS JRNL TITL PROBING THE MOLECULAR AND STRUCTURAL ELEMENTS OF LIGANDS JRNL TITL 2 BINDING TO THE ACTIVE SITE VERSUS AN ALLOSTERIC POCKET OF JRNL TITL 3 THE HUMAN FARNESYL PYROPHOSPHATE SYNTHASE. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 1117 2015 JRNL REFN ISSN 0960-894X JRNL PMID 25630225 JRNL DOI 10.1016/J.BMCL.2014.12.089 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 36355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2023 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2615 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.38000 REMARK 3 B22 (A**2) : -3.38000 REMARK 3 B33 (A**2) : 6.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.827 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2777 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2597 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3780 ; 1.866 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5942 ; 0.907 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 5.891 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;34.531 ;24.724 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;14.840 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.022 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3147 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 641 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1363 ; 2.769 ; 3.351 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1362 ; 2.753 ; 3.349 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1702 ; 4.002 ; 5.001 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1703 ; 4.004 ; 5.002 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1413 ; 3.895 ; 3.635 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1413 ; 3.892 ; 3.635 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2079 ; 5.599 ; 5.343 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3394 ; 8.145 ;28.176 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3395 ; 8.144 ;28.187 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 13 F 29 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7001 80.6299 9.5944 REMARK 3 T TENSOR REMARK 3 T11: 0.2145 T22: 0.3786 REMARK 3 T33: 0.2420 T12: -0.1289 REMARK 3 T13: -0.1405 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 12.9584 L22: 9.4133 REMARK 3 L33: 10.6279 L12: 8.8388 REMARK 3 L13: -8.5270 L23: -4.3547 REMARK 3 S TENSOR REMARK 3 S11: -0.3220 S12: 0.7171 S13: -0.2567 REMARK 3 S21: -0.5678 S22: 0.1597 S23: 0.5492 REMARK 3 S31: 0.5452 S32: -0.9058 S33: 0.1623 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 30 F 36 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4804 90.7021 -3.2670 REMARK 3 T TENSOR REMARK 3 T11: 0.4918 T22: 0.3857 REMARK 3 T33: 0.3657 T12: 0.0205 REMARK 3 T13: -0.0116 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 9.3974 L22: 0.0083 REMARK 3 L33: 0.0539 L12: -0.2436 REMARK 3 L13: -0.6929 L23: 0.0173 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: -0.1994 S13: 0.3742 REMARK 3 S21: -0.0163 S22: -0.0175 S23: 0.0001 REMARK 3 S31: -0.0044 S32: 0.0085 S33: -0.0595 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 37 F 76 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7461 82.5873 14.6637 REMARK 3 T TENSOR REMARK 3 T11: 0.1282 T22: 0.1788 REMARK 3 T33: 0.1579 T12: -0.1024 REMARK 3 T13: -0.0991 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 6.4570 L22: 3.0632 REMARK 3 L33: 5.5918 L12: 0.1679 REMARK 3 L13: -4.5967 L23: -0.0591 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: 0.6236 S13: -0.1299 REMARK 3 S21: -0.5035 S22: 0.1901 S23: 0.6161 REMARK 3 S31: 0.1112 S32: -0.6489 S33: -0.1450 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 77 F 178 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7850 85.6806 19.2192 REMARK 3 T TENSOR REMARK 3 T11: 0.0419 T22: 0.0439 REMARK 3 T33: 0.0441 T12: -0.0389 REMARK 3 T13: -0.0171 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 4.1573 L22: 2.7741 REMARK 3 L33: 2.0455 L12: -0.1597 REMARK 3 L13: -1.4289 L23: -0.5430 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: 0.1492 S13: -0.0862 REMARK 3 S21: -0.1719 S22: 0.1169 S23: 0.3420 REMARK 3 S31: 0.1285 S32: -0.2252 S33: -0.0620 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 179 F 253 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9005 81.9070 35.9589 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.2135 REMARK 3 T33: 0.0614 T12: -0.0108 REMARK 3 T13: 0.0504 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 4.0845 L22: 4.4985 REMARK 3 L33: 3.9067 L12: -0.9081 REMARK 3 L13: -0.0057 L23: -2.3148 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: -0.4211 S13: 0.0004 REMARK 3 S21: 0.4396 S22: -0.0079 S23: 0.0810 REMARK 3 S31: 0.0308 S32: 0.3443 S33: 0.0426 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 254 F 350 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4467 71.1202 41.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.2575 T22: 0.3842 REMARK 3 T33: 0.2300 T12: 0.0538 REMARK 3 T13: 0.0909 T23: 0.1428 REMARK 3 L TENSOR REMARK 3 L11: 6.1562 L22: 4.5470 REMARK 3 L33: 2.5772 L12: -2.2261 REMARK 3 L13: 1.0566 L23: -2.2935 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.3633 S13: -0.5141 REMARK 3 S21: 0.2608 S22: -0.2425 S23: -0.1494 REMARK 3 S31: 0.4035 S32: 0.4563 S33: 0.2424 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38434 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 55.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 1.17700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0073 REMARK 200 STARTING MODEL: PDB ENTRY 2F7M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM PHOSPHATE, 20% REMARK 280 GLYCEROL, 0.08 M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.96000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.32500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.48000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.32500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.44000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.32500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.48000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.32500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.44000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.96000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 110.65000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 110.65000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.96000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH F 515 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 557 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F -21 REMARK 465 GLY F -20 REMARK 465 SER F -19 REMARK 465 SER F -18 REMARK 465 HIS F -17 REMARK 465 HIS F -16 REMARK 465 HIS F -15 REMARK 465 HIS F -14 REMARK 465 HIS F -13 REMARK 465 HIS F -12 REMARK 465 SER F -11 REMARK 465 SER F -10 REMARK 465 GLY F -9 REMARK 465 ARG F -8 REMARK 465 GLU F -7 REMARK 465 ASN F -6 REMARK 465 LEU F -5 REMARK 465 TYR F -4 REMARK 465 PHE F -3 REMARK 465 GLN F -2 REMARK 465 GLY F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 ASN F 2 REMARK 465 GLY F 3 REMARK 465 ASP F 4 REMARK 465 GLN F 5 REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 465 ASP F 8 REMARK 465 VAL F 9 REMARK 465 ARG F 351 REMARK 465 ARG F 352 REMARK 465 LYS F 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR F 10 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN F 12 CG CD OE1 NE2 REMARK 470 GLU F 13 CG CD OE1 OE2 REMARK 470 GLN F 15 CG CD OE1 NE2 REMARK 470 GLU F 30 CG CD OE1 OE2 REMARK 470 ASP F 31 CG OD1 OD2 REMARK 470 MET F 33 CG SD CE REMARK 470 ARG F 69 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 73 CG CD OE1 OE2 REMARK 470 ARG F 75 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 121 CE NZ REMARK 470 LYS F 191 CG CD CE NZ REMARK 470 LYS F 257 CG CD CE NZ REMARK 470 GLU F 281 CG CD OE1 OE2 REMARK 470 GLU F 288 CG CD OE1 OE2 REMARK 470 LYS F 293 CG CD CE NZ REMARK 470 GLU F 296 CG CD OE1 OE2 REMARK 470 LYS F 297 CG CD CE NZ REMARK 470 ARG F 300 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 350 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG F 26 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG F 112 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG F 141 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG F 141 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LYS F 347 CD - CE - NZ ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP F 31 0.26 -62.55 REMARK 500 GLU F 37 -50.55 -26.07 REMARK 500 GLN F 77 66.84 -117.17 REMARK 500 VAL F 124 -72.44 -94.11 REMARK 500 THR F 201 -53.75 -124.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 F 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WC1 F 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL F 404 DBREF 4QXS F 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 4QXS MET F -21 UNP P14324 EXPRESSION TAG SEQADV 4QXS GLY F -20 UNP P14324 EXPRESSION TAG SEQADV 4QXS SER F -19 UNP P14324 EXPRESSION TAG SEQADV 4QXS SER F -18 UNP P14324 EXPRESSION TAG SEQADV 4QXS HIS F -17 UNP P14324 EXPRESSION TAG SEQADV 4QXS HIS F -16 UNP P14324 EXPRESSION TAG SEQADV 4QXS HIS F -15 UNP P14324 EXPRESSION TAG SEQADV 4QXS HIS F -14 UNP P14324 EXPRESSION TAG SEQADV 4QXS HIS F -13 UNP P14324 EXPRESSION TAG SEQADV 4QXS HIS F -12 UNP P14324 EXPRESSION TAG SEQADV 4QXS SER F -11 UNP P14324 EXPRESSION TAG SEQADV 4QXS SER F -10 UNP P14324 EXPRESSION TAG SEQADV 4QXS GLY F -9 UNP P14324 EXPRESSION TAG SEQADV 4QXS ARG F -8 UNP P14324 EXPRESSION TAG SEQADV 4QXS GLU F -7 UNP P14324 EXPRESSION TAG SEQADV 4QXS ASN F -6 UNP P14324 EXPRESSION TAG SEQADV 4QXS LEU F -5 UNP P14324 EXPRESSION TAG SEQADV 4QXS TYR F -4 UNP P14324 EXPRESSION TAG SEQADV 4QXS PHE F -3 UNP P14324 EXPRESSION TAG SEQADV 4QXS GLN F -2 UNP P14324 EXPRESSION TAG SEQADV 4QXS GLY F -1 UNP P14324 EXPRESSION TAG SEQADV 4QXS HIS F 0 UNP P14324 EXPRESSION TAG SEQRES 1 F 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 F 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 F 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 F 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 F 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 F 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 F 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 F 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 F 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 F 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 F 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 F 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 F 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 F 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 F 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 F 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 F 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 F 375 LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 F 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 F 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 F 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 F 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 F 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 F 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 F 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 F 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 F 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 F 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 F 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET PO4 F 401 5 HET PO4 F 402 5 HET WC1 F 403 30 HET GOL F 404 6 HETNAM PO4 PHOSPHATE ION HETNAM WC1 (2-{2-[(2S)-3-METHYLBUTAN-2-YL]-5-PHENYL-1H-INDOL-3- HETNAM 2 WC1 YL}ETHANE-1,1-DIYL)BIS(PHOSPHONIC ACID) HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 WC1 C21 H27 N O6 P2 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *144(H2 O) HELIX 1 1 GLN F 12 THR F 29 1 18 HELIX 2 2 GLU F 30 HIS F 35 1 6 HELIX 3 3 ILE F 38 ALA F 53 1 16 HELIX 4 4 TYR F 58 VAL F 72 1 15 HELIX 5 5 GLU F 73 GLN F 77 5 5 HELIX 6 6 ASP F 78 ASP F 107 1 30 HELIX 7 7 TRP F 118 LYS F 121 5 4 HELIX 8 8 VAL F 124 LEU F 126 5 3 HELIX 9 9 ASP F 127 ARG F 148 1 22 HELIX 10 10 TYR F 152 ALA F 178 1 27 HELIX 11 11 ASP F 184 PHE F 188 5 5 HELIX 12 12 THR F 189 THR F 201 1 13 HELIX 13 13 THR F 201 PHE F 206 1 6 HELIX 14 14 PHE F 206 ALA F 217 1 12 HELIX 15 15 GLY F 221 GLY F 250 1 30 HELIX 16 16 ASP F 251 GLY F 256 1 6 HELIX 17 17 SER F 268 ALA F 278 1 11 HELIX 18 18 THR F 279 TYR F 290 1 12 HELIX 19 19 GLU F 294 LEU F 308 1 15 HELIX 20 20 ASP F 309 ALA F 333 1 25 HELIX 21 21 PRO F 337 LYS F 350 1 14 SHEET 1 A 2 THR F 111 ARG F 112 0 SHEET 2 A 2 GLN F 115 ILE F 116 -1 O GLN F 115 N ARG F 112 CISPEP 1 ALA F 334 PRO F 335 0 6.27 SITE 1 AC1 9 GLY F 56 LYS F 57 GLN F 96 ARG F 113 SITE 2 AC1 9 PO4 F 402 WC1 F 403 HOH F 503 HOH F 505 SITE 3 AC1 9 HOH F 575 SITE 1 AC2 5 ARG F 112 ARG F 113 PO4 F 401 HOH F 575 SITE 2 AC2 5 HOH F 578 SITE 1 AC3 14 LYS F 57 ASN F 59 ARG F 60 THR F 63 SITE 2 AC3 14 SER F 205 PHE F 206 PHE F 239 ASP F 243 SITE 3 AC3 14 LEU F 344 LYS F 347 PO4 F 401 HOH F 505 SITE 4 AC3 14 HOH F 542 HOH F 551 SITE 1 AC4 7 GLU F 158 LEU F 161 GLN F 162 HOH F 522 SITE 2 AC4 7 HOH F 558 HOH F 584 HOH F 613 CRYST1 110.650 110.650 77.920 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009038 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009038 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012834 0.00000