HEADER CELL ADHESION 24-JUL-14 4QYC OBSLTE 07-OCT-15 4QYC 5DZL TITLE CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN HUMAN CEACAM1: HUMAN TIM3 TITLE 2 MEMBRANE DISTAL AMINO TERMINAL (N)-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 1, COMPND 3 T-CELL IMMUNOGLOBULIN MUCIN RECEPTOR 3; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: BILIARY GLYCOPROTEIN 1, BGP-1, HAVCR-2, T-CELL COMPND 6 IMMUNOGLOBULIN AND MUCIN DOMAIN-CONTAINING PROTEIN 3, TIMD-3, TIM-3, COMPND 7 T-CELL MEMBRANE PROTEIN 3, HEPATITIS A VIRUS CELLULAR RECEPTOR 2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BGP, BGP1, CEACAM1, HAVCR2, TIM3, TIMD3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL ADHESION MOLECULE, SIGNALING PROTEIN, TOLERANCE AND T CELL KEYWDS 2 EXHAUSTION, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.HUANG,A.K.GANDHI,A.RUSSELL,Y.KONDO,Q.CHEN,G.A.PETSKO,R.S.BLUMBERG REVDAT 3 07-OCT-15 4QYC 1 OBSLTE REVDAT 2 25-FEB-15 4QYC 1 JRNL REVDAT 1 12-NOV-14 4QYC 0 JRNL AUTH Y.H.HUANG,C.ZHU,Y.KONDO,A.C.ANDERSON,A.GANDHI,A.RUSSELL, JRNL AUTH 2 S.K.DOUGAN,B.S.PETERSEN,E.MELUM,T.PERTEL,K.L.CLAYTON,M.RAAB, JRNL AUTH 3 Q.CHEN,N.BEAUCHEMIN,P.J.YAZAKI,M.PYZIK,M.A.OSTROWSKI, JRNL AUTH 4 J.N.GLICKMAN,C.E.RUDD,H.L.PLOEGH,A.FRANKE,G.A.PETSKO, JRNL AUTH 5 V.K.KUCHROO,R.S.BLUMBERG JRNL TITL CEACAM1 REGULATES TIM-3-MEDIATED TOLERANCE AND EXHAUSTION. JRNL REF NATURE V. 517 386 2015 JRNL REFN ISSN 0028-0836 JRNL PMID 25363763 JRNL DOI 10.1038/NATURE13848 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 6296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.347 REMARK 3 R VALUE (WORKING SET) : 0.346 REMARK 3 FREE R VALUE : 0.373 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.4890 - 3.4010 0.98 412 27 0.3600 0.3860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.687 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4QYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-14. REMARK 100 THE RCSB ID CODE IS RCSB086667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.01 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6397 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 36.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.300 REMARK 200 R MERGE (I) : 0.25400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS 8.0, 25% PEG 3350, 12% REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.71000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.88000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.85500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.88000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.56500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.88000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.88000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.85500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.88000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.88000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.56500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.71000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 108 REMARK 465 GLY A 109 REMARK 465 GLY A 110 REMARK 465 GLY A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 GLY A 114 REMARK 465 GLY A 115 REMARK 465 GLY A 116 REMARK 465 SER A 117 REMARK 465 GLY A 118 REMARK 465 GLY A 119 REMARK 465 GLY A 120 REMARK 465 GLY A 121 REMARK 465 SER A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 SER A 127 REMARK 465 GLU A 128 REMARK 465 VAL A 129 REMARK 465 GLU A 130 REMARK 465 TYR A 131 REMARK 465 ARG A 132 REMARK 465 ALA A 133 REMARK 465 GLU A 134 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 GLN B 2 REMARK 465 LEU B 3 REMARK 465 TYR B 107 REMARK 465 GLY B 108 REMARK 465 GLY B 109 REMARK 465 GLY B 110 REMARK 465 GLY B 111 REMARK 465 SER B 112 REMARK 465 GLY B 113 REMARK 465 GLY B 114 REMARK 465 GLY B 115 REMARK 465 GLY B 116 REMARK 465 SER B 117 REMARK 465 GLY B 118 REMARK 465 GLY B 119 REMARK 465 GLY B 120 REMARK 465 GLY B 121 REMARK 465 SER B 122 REMARK 465 GLY B 123 REMARK 465 GLY B 124 REMARK 465 GLY B 125 REMARK 465 GLY B 126 REMARK 465 SER B 127 REMARK 465 GLU B 128 REMARK 465 VAL B 129 REMARK 465 GLU B 130 REMARK 465 TYR B 131 REMARK 465 ARG B 132 REMARK 465 ALA B 133 REMARK 465 GLU B 134 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 158 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 158 CZ3 CH2 REMARK 470 TRP A 183 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 183 CZ3 CH2 REMARK 470 ARG A 186 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 158 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 158 CZ3 CH2 REMARK 470 TRP B 183 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 183 CZ3 CH2 REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 6 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 VAL A 165 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 GLU B 13 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 GLN B 26 N - CA - C ANGL. DEV. = 20.6 DEGREES REMARK 500 VAL B 135 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 PRO B 155 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 ALA B 162 CB - CA - C ANGL. DEV. = -9.1 DEGREES REMARK 500 CYS B 163 CA - CB - SG ANGL. DEV. = -20.9 DEGREES REMARK 500 TYR B 187 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 TRP B 188 N - CA - CB ANGL. DEV. = 16.9 DEGREES REMARK 500 TYR B 213 N - CA - C ANGL. DEV. = -18.7 DEGREES REMARK 500 HIS B 233 CB - CA - C ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 141 -132.27 53.28 REMARK 500 VAL A 154 -92.98 -85.35 REMARK 500 CYS A 157 -57.42 -133.91 REMARK 500 VAL A 165 -71.75 -66.20 REMARK 500 LEU A 173 -76.40 -99.31 REMARK 500 SER A 199 4.44 147.37 REMARK 500 VAL A 205 67.29 33.33 REMARK 500 THR A 206 -174.28 -63.47 REMARK 500 PHE A 228 50.55 31.87 REMARK 500 PRO B 25 -175.89 -68.86 REMARK 500 GLN B 137 140.95 -39.13 REMARK 500 TYR B 140 170.99 -54.89 REMARK 500 PRO B 155 21.17 36.87 REMARK 500 TRP B 158 -169.90 -175.41 REMARK 500 CYS B 168 150.91 54.78 REMARK 500 ARG B 174 149.24 -178.31 REMARK 500 ARG B 186 -117.73 -110.26 REMARK 500 ASP B 209 0.43 -64.09 REMARK 500 ILE B 212 168.90 85.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 154 PRO B 155 -146.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER A 6 47.6 L L OUTSIDE RANGE REMARK 500 VAL A 165 22.9 L L OUTSIDE RANGE REMARK 500 PHE A 228 23.6 L L OUTSIDE RANGE REMARK 500 GLN B 26 22.6 L L OUTSIDE RANGE REMARK 500 ASN B 138 15.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QXQ RELATED DB: PDB REMARK 900 RELATED ID: 2GK2 RELATED DB: PDB REMARK 900 RELATED ID: 2OYP RELATED DB: PDB REMARK 900 RELATED ID: 4QXW RELATED DB: PDB DBREF 4QYC A 4 107 UNP P13688 CEAM1_HUMAN 38 141 DBREF 4QYC A 127 231 UNP Q8TDQ0 HAVR2_HUMAN 22 126 DBREF 4QYC B 4 107 UNP P13688 CEAM1_HUMAN 38 141 DBREF 4QYC B 127 231 UNP Q8TDQ0 HAVR2_HUMAN 22 126 SEQADV 4QYC GLN A 2 UNP P13688 EXPRESSION TAG SEQADV 4QYC LEU A 3 UNP P13688 EXPRESSION TAG SEQADV 4QYC GLY A 108 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 109 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 110 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 111 UNP Q8TDQ0 LINKER SEQADV 4QYC SER A 112 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 113 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 114 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 115 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 116 UNP Q8TDQ0 LINKER SEQADV 4QYC SER A 117 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 118 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 119 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 120 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 121 UNP Q8TDQ0 LINKER SEQADV 4QYC SER A 122 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 123 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 124 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 125 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY A 126 UNP Q8TDQ0 LINKER SEQADV 4QYC HIS A 232 UNP Q8TDQ0 EXPRESSION TAG SEQADV 4QYC HIS A 233 UNP Q8TDQ0 EXPRESSION TAG SEQADV 4QYC HIS A 234 UNP Q8TDQ0 EXPRESSION TAG SEQADV 4QYC HIS A 235 UNP Q8TDQ0 EXPRESSION TAG SEQADV 4QYC HIS A 236 UNP Q8TDQ0 EXPRESSION TAG SEQADV 4QYC HIS A 237 UNP Q8TDQ0 EXPRESSION TAG SEQADV 4QYC GLN B 2 UNP P13688 EXPRESSION TAG SEQADV 4QYC LEU B 3 UNP P13688 EXPRESSION TAG SEQADV 4QYC GLY B 108 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 109 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 110 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 111 UNP Q8TDQ0 LINKER SEQADV 4QYC SER B 112 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 113 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 114 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 115 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 116 UNP Q8TDQ0 LINKER SEQADV 4QYC SER B 117 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 118 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 119 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 120 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 121 UNP Q8TDQ0 LINKER SEQADV 4QYC SER B 122 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 123 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 124 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 125 UNP Q8TDQ0 LINKER SEQADV 4QYC GLY B 126 UNP Q8TDQ0 LINKER SEQADV 4QYC HIS B 232 UNP Q8TDQ0 EXPRESSION TAG SEQADV 4QYC HIS B 233 UNP Q8TDQ0 EXPRESSION TAG SEQADV 4QYC HIS B 234 UNP Q8TDQ0 EXPRESSION TAG SEQADV 4QYC HIS B 235 UNP Q8TDQ0 EXPRESSION TAG SEQADV 4QYC HIS B 236 UNP Q8TDQ0 EXPRESSION TAG SEQADV 4QYC HIS B 237 UNP Q8TDQ0 EXPRESSION TAG SEQRES 1 A 236 GLN LEU THR GLU SER MET PRO PHE ASN VAL ALA GLU GLY SEQRES 2 A 236 LYS GLU VAL LEU LEU LEU VAL HIS ASN LEU PRO GLN GLN SEQRES 3 A 236 LEU PHE GLY TYR SER TRP TYR LYS GLY GLU ARG VAL ASP SEQRES 4 A 236 GLY ASN ARG GLN ILE VAL GLY TYR ALA ILE GLY THR GLN SEQRES 5 A 236 GLN ALA THR PRO GLY PRO ALA ASN SER GLY ARG GLU THR SEQRES 6 A 236 ILE TYR PRO ASN ALA SER LEU LEU ILE GLN ASN VAL THR SEQRES 7 A 236 GLN ASN ASP THR GLY PHE TYR THR LEU GLN VAL ILE LYS SEQRES 8 A 236 SER ASP LEU VAL ASN GLU GLU ALA THR GLY GLN PHE HIS SEQRES 9 A 236 VAL TYR GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY SEQRES 10 A 236 GLY GLY GLY SER GLY GLY GLY GLY SER GLU VAL GLU TYR SEQRES 11 A 236 ARG ALA GLU VAL GLY GLN ASN ALA TYR LEU PRO CYS PHE SEQRES 12 A 236 TYR THR PRO ALA ALA PRO GLY ASN LEU VAL PRO VAL CYS SEQRES 13 A 236 TRP GLY LYS GLY ALA CYS PRO VAL PHE GLU CYS GLY ASN SEQRES 14 A 236 VAL VAL LEU ARG THR ASP GLU ARG ASP VAL ASN TYR TRP SEQRES 15 A 236 THR SER ARG TYR TRP LEU ASN GLY ASP PHE ARG LYS GLY SEQRES 16 A 236 ASP VAL SER LEU THR ILE GLU ASN VAL THR LEU ALA ASP SEQRES 17 A 236 SER GLY ILE TYR CYS CYS ARG ILE GLN ILE PRO GLY ILE SEQRES 18 A 236 MET ASN ASP GLU LYS PHE ASN LEU LYS HIS HIS HIS HIS SEQRES 19 A 236 HIS HIS SEQRES 1 B 236 GLN LEU THR GLU SER MET PRO PHE ASN VAL ALA GLU GLY SEQRES 2 B 236 LYS GLU VAL LEU LEU LEU VAL HIS ASN LEU PRO GLN GLN SEQRES 3 B 236 LEU PHE GLY TYR SER TRP TYR LYS GLY GLU ARG VAL ASP SEQRES 4 B 236 GLY ASN ARG GLN ILE VAL GLY TYR ALA ILE GLY THR GLN SEQRES 5 B 236 GLN ALA THR PRO GLY PRO ALA ASN SER GLY ARG GLU THR SEQRES 6 B 236 ILE TYR PRO ASN ALA SER LEU LEU ILE GLN ASN VAL THR SEQRES 7 B 236 GLN ASN ASP THR GLY PHE TYR THR LEU GLN VAL ILE LYS SEQRES 8 B 236 SER ASP LEU VAL ASN GLU GLU ALA THR GLY GLN PHE HIS SEQRES 9 B 236 VAL TYR GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY SEQRES 10 B 236 GLY GLY GLY SER GLY GLY GLY GLY SER GLU VAL GLU TYR SEQRES 11 B 236 ARG ALA GLU VAL GLY GLN ASN ALA TYR LEU PRO CYS PHE SEQRES 12 B 236 TYR THR PRO ALA ALA PRO GLY ASN LEU VAL PRO VAL CYS SEQRES 13 B 236 TRP GLY LYS GLY ALA CYS PRO VAL PHE GLU CYS GLY ASN SEQRES 14 B 236 VAL VAL LEU ARG THR ASP GLU ARG ASP VAL ASN TYR TRP SEQRES 15 B 236 THR SER ARG TYR TRP LEU ASN GLY ASP PHE ARG LYS GLY SEQRES 16 B 236 ASP VAL SER LEU THR ILE GLU ASN VAL THR LEU ALA ASP SEQRES 17 B 236 SER GLY ILE TYR CYS CYS ARG ILE GLN ILE PRO GLY ILE SEQRES 18 B 236 MET ASN ASP GLU LYS PHE ASN LEU LYS HIS HIS HIS HIS SEQRES 19 B 236 HIS HIS FORMUL 3 HOH *19(H2 O) HELIX 1 1 ASP A 40 ASN A 42 5 3 HELIX 2 2 THR A 79 THR A 83 5 5 HELIX 3 3 ASP B 40 ASN B 42 5 3 HELIX 4 4 LEU B 207 GLY B 211 5 5 SHEET 1 A 3 VAL A 17 LEU A 19 0 SHEET 2 A 3 LEU A 73 ILE A 75 -1 O LEU A 73 N LEU A 19 SHEET 3 A 3 GLU A 65 ILE A 67 -1 N THR A 66 O LEU A 74 SHEET 1 B 5 GLN A 54 PRO A 57 0 SHEET 2 B 5 GLN A 44 ALA A 49 -1 N GLY A 47 O THR A 56 SHEET 3 B 5 LEU A 28 LYS A 35 -1 N TRP A 33 O ILE A 45 SHEET 4 B 5 GLY A 84 LYS A 92 -1 O ILE A 91 N PHE A 29 SHEET 5 B 5 GLU A 98 PHE A 104 -1 O GLY A 102 N TYR A 86 SHEET 1 C 5 TYR A 182 SER A 185 0 SHEET 2 C 5 VAL A 172 GLU A 177 -1 N THR A 175 O THR A 184 SHEET 3 C 5 VAL A 156 ALA A 162 -1 N GLY A 161 O LEU A 173 SHEET 4 C 5 TYR A 213 PRO A 220 -1 O CYS A 215 N ALA A 162 SHEET 5 C 5 LEU A 230 LYS A 231 -1 O LEU A 230 N CYS A 214 SHEET 1 D 2 PHE A 193 LYS A 195 0 SHEET 2 D 2 THR A 201 GLU A 203 -1 O ILE A 202 N ARG A 194 SHEET 1 E 4 SER B 6 MET B 7 0 SHEET 2 E 4 VAL B 17 LEU B 19 -1 O LEU B 18 N MET B 7 SHEET 3 E 4 LEU B 73 ILE B 75 -1 O LEU B 73 N LEU B 19 SHEET 4 E 4 GLU B 65 ILE B 67 -1 N THR B 66 O LEU B 74 SHEET 1 F 5 ALA B 55 PRO B 57 0 SHEET 2 F 5 GLN B 44 ALA B 49 -1 N GLY B 47 O THR B 56 SHEET 3 F 5 LEU B 28 LYS B 35 -1 N TRP B 33 O ILE B 45 SHEET 4 F 5 GLY B 84 LYS B 92 -1 O ILE B 91 N GLY B 30 SHEET 5 F 5 GLU B 98 GLU B 99 -1 O GLU B 98 N VAL B 90 SHEET 1 G 5 ALA B 55 PRO B 57 0 SHEET 2 G 5 GLN B 44 ALA B 49 -1 N GLY B 47 O THR B 56 SHEET 3 G 5 LEU B 28 LYS B 35 -1 N TRP B 33 O ILE B 45 SHEET 4 G 5 GLY B 84 LYS B 92 -1 O ILE B 91 N GLY B 30 SHEET 5 G 5 GLN B 103 PHE B 104 -1 O PHE B 104 N GLY B 84 SHEET 1 H 4 THR B 184 SER B 185 0 SHEET 2 H 4 VAL B 172 ASP B 176 -1 N THR B 175 O THR B 184 SHEET 3 H 4 VAL B 156 ALA B 162 -1 N GLY B 161 O LEU B 173 SHEET 4 H 4 ILE B 217 PRO B 220 -1 O ILE B 219 N TRP B 158 SHEET 1 I 2 PHE B 193 GLY B 196 0 SHEET 2 I 2 LEU B 200 GLU B 203 -1 O LEU B 200 N GLY B 196 SSBOND 1 CYS A 163 CYS A 214 1555 1555 2.58 CISPEP 1 MET A 7 PRO A 8 0 2.23 CISPEP 2 VAL A 135 GLY A 136 0 -18.07 CISPEP 3 CYS A 163 PRO A 164 0 0.97 CISPEP 4 MET B 7 PRO B 8 0 -1.29 CRYST1 75.760 75.760 147.420 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006783 0.00000