HEADER PROTEIN BINDING 24-JUL-14 4QYD TITLE CRYSTAL STRUCTURE OF THE HUMAN BRPF1 BROMODOMAIN IN COMPLEX WITH A TITLE 2 HISTONE H4K12AC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEREGRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BROMODOMAIN (UNP RESIDUES 629-742); COMPND 5 SYNONYM: BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1, PROTEIN COMPND 6 BR140; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: HISTONE H4K12AC PEPTIDE (UNP RESIDUES 5-18); COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BR140, BRPF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST15; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS BROMODOMAIN-PHD FINGER PROTEIN 1 (BRPF1), HISTONE ACETYLTRANSFERASE KEYWDS 2 (HAT), MONOCYTIC LEUKEMIA ZINC-FINGER (MOZ), EPIGENETICS, CHROMATIN KEYWDS 3 READER, BROMODOMAIN, HISTONE POST-TRANSCRIPTIONAL MODIFICATION (PTM) KEYWDS 4 READER DOMAIN, HISTONE H4 ACETYLATED AT LYSINE 14, ACETYLLYSINE, KEYWDS 5 NUCLEUS, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.Y.LUBULA,K.C.GLASS REVDAT 5 06-DEC-23 4QYD 1 REMARK REVDAT 4 20-SEP-23 4QYD 1 SEQADV LINK REVDAT 3 17-DEC-14 4QYD 1 JRNL REVDAT 2 22-OCT-14 4QYD 1 JRNL REVDAT 1 24-SEP-14 4QYD 0 JRNL AUTH M.Y.LUBULA,B.E.ECKENROTH,S.CARLSON,A.POPLAWSKI,M.CHRUSZCZ, JRNL AUTH 2 K.C.GLASS JRNL TITL STRUCTURAL INSIGHTS INTO RECOGNITION OF ACETYLATED HISTONE JRNL TITL 2 LIGANDS BY THE BRPF1 BROMODOMAIN. JRNL REF FEBS LETT. V. 588 3844 2014 JRNL REFN ISSN 0014-5793 JRNL PMID 25281266 JRNL DOI 10.1016/J.FEBSLET.2014.09.028 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1402) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4334 - 3.7120 1.00 2702 155 0.1763 0.2214 REMARK 3 2 3.7120 - 2.9469 1.00 2584 128 0.1751 0.2174 REMARK 3 3 2.9469 - 2.5745 1.00 2554 136 0.1879 0.2323 REMARK 3 4 2.5745 - 2.3392 1.00 2509 142 0.1724 0.1862 REMARK 3 5 2.3392 - 2.1715 1.00 2496 152 0.1700 0.1827 REMARK 3 6 2.1715 - 2.0435 1.00 2494 124 0.1631 0.2178 REMARK 3 7 2.0435 - 1.9400 0.98 2475 129 0.1709 0.2092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1014 REMARK 3 ANGLE : 0.950 1361 REMARK 3 CHIRALITY : 0.066 146 REMARK 3 PLANARITY : 0.004 179 REMARK 3 DIHEDRAL : 12.875 392 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4797 84.2492 100.5969 REMARK 3 T TENSOR REMARK 3 T11: 0.2211 T22: 0.8282 REMARK 3 T33: 0.2771 T12: 0.1663 REMARK 3 T13: -0.1110 T23: 0.1760 REMARK 3 L TENSOR REMARK 3 L11: 5.4108 L22: 6.0042 REMARK 3 L33: 4.3278 L12: -1.2440 REMARK 3 L13: 0.0155 L23: 0.5356 REMARK 3 S TENSOR REMARK 3 S11: -0.1516 S12: -2.1388 S13: -0.0482 REMARK 3 S21: 1.3247 S22: -0.0300 S23: -1.0712 REMARK 3 S31: 0.6523 S32: 1.1199 S33: -0.0107 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0124 90.7519 99.5984 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.2780 REMARK 3 T33: 0.1789 T12: 0.0099 REMARK 3 T13: 0.0498 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 5.8942 L22: 3.8617 REMARK 3 L33: 2.0082 L12: -1.5470 REMARK 3 L13: -1.8234 L23: 0.2883 REMARK 3 S TENSOR REMARK 3 S11: -0.1071 S12: -0.7629 S13: -0.2557 REMARK 3 S21: 0.2265 S22: 0.0497 S23: 0.3069 REMARK 3 S31: -0.0514 S32: 0.0281 S33: 0.0526 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5492 84.0801 96.1942 REMARK 3 T TENSOR REMARK 3 T11: 0.2128 T22: 0.2858 REMARK 3 T33: 0.2476 T12: 0.0298 REMARK 3 T13: 0.0417 T23: 0.0893 REMARK 3 L TENSOR REMARK 3 L11: 3.5762 L22: 1.9787 REMARK 3 L33: 2.5334 L12: -0.5241 REMARK 3 L13: -1.2526 L23: 0.5419 REMARK 3 S TENSOR REMARK 3 S11: -0.2054 S12: -0.6827 S13: -0.7573 REMARK 3 S21: 0.2374 S22: 0.1920 S23: 0.2145 REMARK 3 S31: 0.3570 S32: 0.2452 S33: -0.0042 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7847 96.1331 92.6837 REMARK 3 T TENSOR REMARK 3 T11: 0.1648 T22: 0.1795 REMARK 3 T33: 0.2065 T12: -0.0345 REMARK 3 T13: 0.0235 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 7.2357 L22: 2.9130 REMARK 3 L33: 2.3630 L12: -1.7520 REMARK 3 L13: -1.4959 L23: 0.7923 REMARK 3 S TENSOR REMARK 3 S11: 0.3091 S12: -0.3135 S13: 1.0751 REMARK 3 S21: 0.0648 S22: 0.0151 S23: -0.4337 REMARK 3 S31: -0.2590 S32: 0.1843 S33: -0.2866 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2406 77.4544 89.4081 REMARK 3 T TENSOR REMARK 3 T11: 0.5834 T22: 0.8354 REMARK 3 T33: 1.0018 T12: 0.1729 REMARK 3 T13: -0.0941 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 5.0365 L22: 4.4845 REMARK 3 L33: 6.1669 L12: 4.4141 REMARK 3 L13: 5.2693 L23: 3.9937 REMARK 3 S TENSOR REMARK 3 S11: -0.0870 S12: -0.7690 S13: -1.6659 REMARK 3 S21: -0.3926 S22: 0.9089 S23: -0.6738 REMARK 3 S31: 1.1338 S32: 0.8484 S33: -0.6526 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7363 98.0137 94.6083 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: 0.3938 REMARK 3 T33: 0.1733 T12: 0.0513 REMARK 3 T13: 0.0461 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 6.8979 L22: 6.5191 REMARK 3 L33: 4.3363 L12: -2.2711 REMARK 3 L13: -0.0967 L23: -4.9717 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: 0.7045 S13: 0.5537 REMARK 3 S21: -0.5010 S22: -0.1674 S23: -0.2522 REMARK 3 S31: 0.3496 S32: -0.6770 S33: 0.1083 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4QYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 34.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 14.660 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 27.70 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 27.20 REMARK 200 R MERGE FOR SHELL (I) : 0.27900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 14.66 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2D9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 10% W/V REMARK 280 POLYETHYLENE GLYCOL (PEG) 6,000, 5% V/V (+/-)-2-METHYL-2,4- REMARK 280 PENTANEDIOL (MPD), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.15000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.55000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.72500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.55000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.57500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.55000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.72500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.55000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.57500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 324 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 300 O HOH A 338 7467 1.83 REMARK 500 O HOH A 252 O HOH A 303 7467 2.02 REMARK 500 O HOH A 333 O HOH A 333 7467 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 114 -115.10 -86.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QYL RELATED DB: PDB DBREF 4QYD A 4 117 UNP P55201 BRPF1_HUMAN 629 742 DBREF 4QYD B 4 17 UNP P62805 H4_HUMAN 5 18 SEQADV 4QYD GLY A 1 UNP P55201 EXPRESSION TAG SEQADV 4QYD PRO A 2 UNP P55201 EXPRESSION TAG SEQADV 4QYD LEU A 3 UNP P55201 EXPRESSION TAG SEQRES 1 A 117 GLY PRO LEU GLN LEU THR PRO PHE LEU ILE LEU LEU ARG SEQRES 2 A 117 LYS THR LEU GLU GLN LEU GLN GLU LYS ASP THR GLY ASN SEQRES 3 A 117 ILE PHE SER GLU PRO VAL PRO LEU SER GLU VAL PRO ASP SEQRES 4 A 117 TYR LEU ASP HIS ILE LYS LYS PRO MET ASP PHE PHE THR SEQRES 5 A 117 MET LYS GLN ASN LEU GLU ALA TYR ARG TYR LEU ASN PHE SEQRES 6 A 117 ASP ASP PHE GLU GLU ASP PHE ASN LEU ILE VAL SER ASN SEQRES 7 A 117 CYS LEU LYS TYR ASN ALA LYS ASP THR ILE PHE TYR ARG SEQRES 8 A 117 ALA ALA VAL ARG LEU ARG GLU GLN GLY GLY ALA VAL LEU SEQRES 9 A 117 ARG GLN ALA ARG ARG GLN ALA GLU LYS MET GLY ILE ASP SEQRES 1 B 14 GLY LYS GLY GLY LYS GLY LEU GLY ALY GLY GLY ALA LYS SEQRES 2 B 14 ARG MODRES 4QYD ALY B 12 LYS N(6)-ACETYLLYSINE HET ALY B 12 12 HETNAM ALY N(6)-ACETYLLYSINE FORMUL 2 ALY C8 H16 N2 O3 FORMUL 3 HOH *143(H2 O) HELIX 1 1 GLN A 4 ASP A 23 1 20 HELIX 2 2 ASP A 39 ILE A 44 1 6 HELIX 3 3 ASP A 49 ALA A 59 1 11 HELIX 4 4 ASN A 64 ASN A 83 1 20 HELIX 5 5 THR A 87 MET A 114 1 28 LINK C GLY B 11 N ALY B 12 1555 1555 1.33 LINK C ALY B 12 N GLY B 13 1555 1555 1.33 CRYST1 75.100 75.100 86.300 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013316 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013316 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011587 0.00000