HEADER OXIDOREDUCTASE 29-JUL-14 4R01 TITLE CRYSTAL STRUCTURE OF SP1627, A PUTATIVE NADH-FLAVIN REDUCTASE, FROM TITLE 2 STREPTOCOCCUS PNEUMONIAE TIGR4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NADH-FLAVIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SP1627; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE TIGR4; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 GENE: SP_1627; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CSGID, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, NIAID, NATIONAL INSTITUTE FOR ALLERGY AND KEYWDS 3 INFECTIOUS DISEASES, ALPHA/BETA FOLD, NAD(P) DINUCLEOTIDE-BINDING KEYWDS 4 ROSSMANN FOLD, PUTATIVE NADH-FLAVIN REDUCTASE, PUTATIVE KEYWDS 5 OXIDOREDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,O.ONOPRIYENKO,A.SAVCHENKO,W.F.ANDERSON,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 20-SEP-23 4R01 1 REMARK SEQADV REVDAT 1 27-AUG-14 4R01 0 JRNL AUTH P.J.STOGIOS,O.ONOPRIYENKO,A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF SP1627, A PUTATIVE NADH-FLAVIN JRNL TITL 2 REDUCTASE, FROM STREPTOCOCCUS PNEUMONIAE TIGR4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 20249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5792 - 5.1624 0.93 1939 136 0.1514 0.2003 REMARK 3 2 5.1624 - 4.1011 0.96 1939 143 0.1370 0.1668 REMARK 3 3 4.1011 - 3.5837 0.96 1950 141 0.1567 0.2145 REMARK 3 4 3.5837 - 3.2565 0.95 1936 145 0.1870 0.2596 REMARK 3 5 3.2565 - 3.0233 0.95 1887 141 0.2284 0.2685 REMARK 3 6 3.0233 - 2.8452 0.94 1897 139 0.2397 0.3322 REMARK 3 7 2.8452 - 2.7028 0.93 1865 138 0.2420 0.3335 REMARK 3 8 2.7028 - 2.5852 0.93 1821 132 0.2547 0.3283 REMARK 3 9 2.5852 - 2.4858 0.89 1827 135 0.2678 0.3078 REMARK 3 10 2.4858 - 2.4000 0.90 1804 134 0.2635 0.3436 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3319 REMARK 3 ANGLE : 0.787 4492 REMARK 3 CHIRALITY : 0.032 521 REMARK 3 PLANARITY : 0.004 577 REMARK 3 DIHEDRAL : 14.737 1222 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 0:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5621 -3.1292 15.2380 REMARK 3 T TENSOR REMARK 3 T11: 0.3213 T22: 0.3961 REMARK 3 T33: 0.5797 T12: 0.0748 REMARK 3 T13: 0.0671 T23: 0.1153 REMARK 3 L TENSOR REMARK 3 L11: 4.7486 L22: 5.7850 REMARK 3 L33: 5.7231 L12: -1.4578 REMARK 3 L13: 0.8302 L23: -1.4070 REMARK 3 S TENSOR REMARK 3 S11: 0.2293 S12: -0.0030 S13: -1.0076 REMARK 3 S21: -0.3233 S22: -0.8496 S23: -0.5093 REMARK 3 S31: 0.2323 S32: 0.7082 S33: 0.5662 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 12:54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6845 -2.1234 15.3993 REMARK 3 T TENSOR REMARK 3 T11: 0.4001 T22: 0.3558 REMARK 3 T33: 0.6316 T12: 0.1244 REMARK 3 T13: 0.0319 T23: 0.0852 REMARK 3 L TENSOR REMARK 3 L11: 5.8989 L22: 1.3432 REMARK 3 L33: 6.6742 L12: -0.3050 REMARK 3 L13: -2.6239 L23: -1.0382 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: -0.1956 S13: -0.8059 REMARK 3 S21: -0.1169 S22: -0.1724 S23: 0.0268 REMARK 3 S31: 0.1629 S32: 0.5039 S33: 0.1596 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 55:71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2567 3.6813 10.0061 REMARK 3 T TENSOR REMARK 3 T11: 0.3838 T22: 0.4400 REMARK 3 T33: 0.4260 T12: 0.1046 REMARK 3 T13: 0.0092 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 9.2932 L22: 3.9440 REMARK 3 L33: 6.6455 L12: -2.6634 REMARK 3 L13: 0.4339 L23: -4.7450 REMARK 3 S TENSOR REMARK 3 S11: -0.5528 S12: 0.3700 S13: -0.1087 REMARK 3 S21: 0.9443 S22: 0.3278 S23: -0.3101 REMARK 3 S31: -0.3133 S32: 0.6480 S33: 0.0118 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 72:209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0085 3.8227 11.1461 REMARK 3 T TENSOR REMARK 3 T11: 0.3030 T22: 0.2453 REMARK 3 T33: 0.3253 T12: 0.0459 REMARK 3 T13: 0.0032 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 4.8090 L22: 1.9533 REMARK 3 L33: 2.5783 L12: -0.8491 REMARK 3 L13: -0.4774 L23: 0.0991 REMARK 3 S TENSOR REMARK 3 S11: 0.1222 S12: 0.4443 S13: -0.4154 REMARK 3 S21: -0.2255 S22: -0.2656 S23: -0.0849 REMARK 3 S31: 0.1581 S32: 0.0507 S33: 0.1437 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 0:16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7289 35.7603 28.1046 REMARK 3 T TENSOR REMARK 3 T11: 0.3436 T22: 0.3179 REMARK 3 T33: 0.5078 T12: -0.1270 REMARK 3 T13: -0.0239 T23: 0.0534 REMARK 3 L TENSOR REMARK 3 L11: 8.3536 L22: 9.7377 REMARK 3 L33: 6.1994 L12: -3.5355 REMARK 3 L13: -3.1103 L23: 0.4397 REMARK 3 S TENSOR REMARK 3 S11: -0.4295 S12: 0.4897 S13: 0.4544 REMARK 3 S21: -0.2215 S22: 0.4627 S23: -0.2547 REMARK 3 S31: -0.5214 S32: 0.1907 S33: -0.1089 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 17:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0812 34.0297 29.1651 REMARK 3 T TENSOR REMARK 3 T11: 0.3281 T22: 0.3565 REMARK 3 T33: 0.4056 T12: -0.1261 REMARK 3 T13: -0.0427 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 6.8278 L22: 6.8429 REMARK 3 L33: 3.1976 L12: 1.2907 REMARK 3 L13: -0.6080 L23: -0.4421 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: -0.0524 S13: 0.5936 REMARK 3 S21: -0.1536 S22: 0.1596 S23: -0.3380 REMARK 3 S31: -0.1691 S32: 0.1637 S33: -0.1791 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 68:91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0326 20.1036 33.1436 REMARK 3 T TENSOR REMARK 3 T11: 0.3076 T22: 0.3762 REMARK 3 T33: 0.3438 T12: -0.0306 REMARK 3 T13: -0.0304 T23: 0.0868 REMARK 3 L TENSOR REMARK 3 L11: 7.1084 L22: 8.0825 REMARK 3 L33: 4.6053 L12: 4.9015 REMARK 3 L13: 4.9305 L23: 6.1362 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: -0.5240 S13: -0.1876 REMARK 3 S21: 0.4556 S22: -0.0108 S23: -0.1555 REMARK 3 S31: 0.1007 S32: 0.2109 S33: -0.0779 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 92:209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2873 27.9985 33.2546 REMARK 3 T TENSOR REMARK 3 T11: 0.2613 T22: 0.3429 REMARK 3 T33: 0.2124 T12: -0.0100 REMARK 3 T13: 0.0128 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 5.4509 L22: 3.8338 REMARK 3 L33: 2.2316 L12: 1.5952 REMARK 3 L13: 0.4744 L23: 0.1415 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.3800 S13: 0.4963 REMARK 3 S21: 0.1342 S22: -0.0542 S23: 0.1708 REMARK 3 S31: -0.1047 S32: -0.1729 S33: 0.0455 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29142 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3H2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PROPANE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.01500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.48000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.01500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.48000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -180.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -11.74655 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.18510 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 424 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 470 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 33 -162.30 -122.60 REMARK 500 ALA A 167 -169.23 -120.21 REMARK 500 LYS A 196 66.84 -117.69 REMARK 500 SER B 33 -163.40 -118.45 REMARK 500 LYS B 140 83.60 -69.21 REMARK 500 ASN B 174 -169.55 -79.95 REMARK 500 LYS B 196 70.48 -114.90 REMARK 500 HIS B 198 -55.70 -132.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 198 HIS A 199 -149.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP06313 RELATED DB: TARGETTRACK DBREF 4R01 A 1 209 UNP Q97PI8 Q97PI8_STRPN 1 209 DBREF 4R01 B 1 209 UNP Q97PI8 Q97PI8_STRPN 1 209 SEQADV 4R01 GLY A 0 UNP Q97PI8 EXPRESSION TAG SEQADV 4R01 GLY B 0 UNP Q97PI8 EXPRESSION TAG SEQRES 1 A 210 GLY MET LYS LEU ALA VAL ILE ALA ALA ASN GLY GLN ALA SEQRES 2 A 210 GLY LYS ALA ILE VAL GLU GLU ALA VAL LYS ARG GLY HIS SEQRES 3 A 210 GLU VAL THR ALA ILE VAL ARG SER GLU ASN LYS SER GLN SEQRES 4 A 210 ALA GLU SER ILE ILE LYS LYS ASP LEU PHE GLU LEU THR SEQRES 5 A 210 LYS ASP ASP LEU THR GLY PHE ASP ALA VAL ILE SER ALA SEQRES 6 A 210 PHE GLY ALA TYR THR PRO ASP THR LEU PRO LEU HIS SER SEQRES 7 A 210 LYS SER ILE GLU LEU PHE ASN GLN LEU LEU ALA GLY THR SEQRES 8 A 210 GLN THR ARG PHE LEU VAL VAL GLY GLY ALA GLY SER LEU SEQRES 9 A 210 TYR ILE ASP GLU THR LYS THR THR ARG LEU LEU ASP THR SEQRES 10 A 210 PRO ASP PHE PRO GLU GLU PHE LYS PRO LEU ALA LYS ALA SEQRES 11 A 210 GLN ALA ASP GLU LEU ASP LEU LEU ARG THR LYS ASN ASN SEQRES 12 A 210 LEU ASN TRP THR PHE VAL SER PRO ALA VAL ASP PHE ILE SEQRES 13 A 210 PRO ASP GLY GLU LYS THR GLY ASN TYR ILE LEU ALA GLY SEQRES 14 A 210 GLU ILE PHE THR THR ASN GLU LYS GLY ILE SER GLN ILE SEQRES 15 A 210 SER TYR ALA ASP TYR ALA ILE GLY LEU VAL ASP GLU LEU SEQRES 16 A 210 GLU LYS GLY HIS HIS ILE LYS GLU ARG ILE SER LEU LEU SEQRES 17 A 210 GLU LYS SEQRES 1 B 210 GLY MET LYS LEU ALA VAL ILE ALA ALA ASN GLY GLN ALA SEQRES 2 B 210 GLY LYS ALA ILE VAL GLU GLU ALA VAL LYS ARG GLY HIS SEQRES 3 B 210 GLU VAL THR ALA ILE VAL ARG SER GLU ASN LYS SER GLN SEQRES 4 B 210 ALA GLU SER ILE ILE LYS LYS ASP LEU PHE GLU LEU THR SEQRES 5 B 210 LYS ASP ASP LEU THR GLY PHE ASP ALA VAL ILE SER ALA SEQRES 6 B 210 PHE GLY ALA TYR THR PRO ASP THR LEU PRO LEU HIS SER SEQRES 7 B 210 LYS SER ILE GLU LEU PHE ASN GLN LEU LEU ALA GLY THR SEQRES 8 B 210 GLN THR ARG PHE LEU VAL VAL GLY GLY ALA GLY SER LEU SEQRES 9 B 210 TYR ILE ASP GLU THR LYS THR THR ARG LEU LEU ASP THR SEQRES 10 B 210 PRO ASP PHE PRO GLU GLU PHE LYS PRO LEU ALA LYS ALA SEQRES 11 B 210 GLN ALA ASP GLU LEU ASP LEU LEU ARG THR LYS ASN ASN SEQRES 12 B 210 LEU ASN TRP THR PHE VAL SER PRO ALA VAL ASP PHE ILE SEQRES 13 B 210 PRO ASP GLY GLU LYS THR GLY ASN TYR ILE LEU ALA GLY SEQRES 14 B 210 GLU ILE PHE THR THR ASN GLU LYS GLY ILE SER GLN ILE SEQRES 15 B 210 SER TYR ALA ASP TYR ALA ILE GLY LEU VAL ASP GLU LEU SEQRES 16 B 210 GLU LYS GLY HIS HIS ILE LYS GLU ARG ILE SER LEU LEU SEQRES 17 B 210 GLU LYS HET SO4 A 301 5 HET CL A 302 1 HET CL A 303 1 HET SO4 B 301 5 HET SO4 B 302 5 HET CL B 303 1 HET CL B 304 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 CL 4(CL 1-) FORMUL 10 HOH *164(H2 O) HELIX 1 1 GLY A 10 GLY A 24 1 15 HELIX 2 2 ASP A 46 LEU A 50 5 5 HELIX 3 3 THR A 51 THR A 56 1 6 HELIX 4 4 THR A 69 LEU A 73 5 5 HELIX 5 5 PRO A 74 ALA A 88 1 15 HELIX 6 6 ARG A 112 THR A 116 5 5 HELIX 7 7 PRO A 120 GLU A 122 5 3 HELIX 8 8 PHE A 123 ARG A 138 1 16 HELIX 9 9 TYR A 183 LYS A 196 1 14 HELIX 10 10 GLY B 10 ARG B 23 1 14 HELIX 11 11 ASP B 46 LEU B 50 5 5 HELIX 12 12 PRO B 74 ALA B 88 1 15 HELIX 13 13 ARG B 112 THR B 116 5 5 HELIX 14 14 PRO B 120 GLU B 122 5 3 HELIX 15 15 PHE B 123 ARG B 138 1 16 HELIX 16 16 TYR B 183 LYS B 196 1 14 SHEET 1 A 8 SER A 41 LYS A 44 0 SHEET 2 A 8 GLU A 26 VAL A 31 1 N ALA A 29 O ILE A 43 SHEET 3 A 8 LYS A 2 ILE A 6 1 N LEU A 3 O THR A 28 SHEET 4 A 8 ALA A 60 SER A 63 1 O ILE A 62 N ALA A 4 SHEET 5 A 8 ARG A 93 VAL A 97 1 O ARG A 93 N VAL A 61 SHEET 6 A 8 ASN A 144 SER A 149 1 O VAL A 148 N VAL A 96 SHEET 7 A 8 GLU A 202 GLU A 208 1 O ILE A 204 N SER A 149 SHEET 8 A 8 TYR A 164 ALA A 167 -1 N ILE A 165 O LEU A 207 SHEET 1 B 2 ASP A 153 ILE A 155 0 SHEET 2 B 2 GLN A 180 SER A 182 1 O ILE A 181 N ILE A 155 SHEET 1 C 8 SER B 41 ILE B 43 0 SHEET 2 C 8 GLU B 26 ILE B 30 1 N ALA B 29 O SER B 41 SHEET 3 C 8 LYS B 2 ILE B 6 1 N LEU B 3 O THR B 28 SHEET 4 C 8 ALA B 60 SER B 63 1 O ILE B 62 N ALA B 4 SHEET 5 C 8 ARG B 93 VAL B 97 1 O LEU B 95 N SER B 63 SHEET 6 C 8 TRP B 145 SER B 149 1 O VAL B 148 N VAL B 96 SHEET 7 C 8 GLU B 202 GLU B 208 1 O ILE B 204 N PHE B 147 SHEET 8 C 8 TYR B 164 ALA B 167 -1 N ILE B 165 O LEU B 207 SHEET 1 D 2 ASP B 153 ILE B 155 0 SHEET 2 D 2 GLN B 180 SER B 182 1 O ILE B 181 N ILE B 155 SITE 1 AC1 5 ALA A 7 ALA A 8 ASN A 9 VAL A 31 SITE 2 AC1 5 ARG A 32 SITE 1 AC2 1 GLU A 169 SITE 1 AC3 1 GLU A 159 SITE 1 AC4 6 ALA B 7 ALA B 8 ASN B 9 VAL B 31 SITE 2 AC4 6 ARG B 32 SER B 33 SITE 1 AC5 3 ASN B 84 ALA B 88 ASN B 142 SITE 1 AC6 2 GLU B 169 ILE B 170 SITE 1 AC7 1 GLU B 34 CRYST1 160.030 82.960 43.790 90.00 105.56 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006249 0.000000 0.001740 0.00000 SCALE2 0.000000 0.012054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023705 0.00000