data_4R0B # _entry.id 4R0B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4R0B RCSB RCSB086738 WWPDB D_1000086738 # _pdbx_database_status.entry_id 4R0B _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-07-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schiefner, A.' 1 'Skerra, A.' 2 # _citation.id primary _citation.title ;The dimeric crystal structure of the human fertility lipocalin glycodelin reveals a protein scaffold for the presentation of complex glycans. ; _citation.journal_abbrev Biochem.J. _citation.journal_volume 466 _citation.page_first 95 _citation.page_last 104 _citation.year 2015 _citation.journal_id_ASTM BIJOAK _citation.country UK _citation.journal_id_ISSN 0264-6021 _citation.journal_id_CSD 0043 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25422905 _citation.pdbx_database_id_DOI 10.1042/BJ20141003 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Schiefner, A.' 1 primary 'Rodewald, F.' 2 primary 'Neumaier, I.' 3 primary 'Skerra, A.' 4 # _cell.length_a 57.003 _cell.length_b 57.003 _cell.length_c 198.641 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4R0B _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.entry_id 4R0B _symmetry.Int_Tables_number 178 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Glycodelin 19657.627 1 ? 'N28E, F162G' 'UNP residues 20-180' ? 2 water nat water 18.015 25 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;GD, Placental protein 14, PP14, Pregnancy-associated endometrial alpha-2 globulin, PAEG, PEG, Progestagen-associated endometrial protein, Progesterone-associated endometrial protein ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DIPQTKQDLELPKLAGTWHSMAMATNEISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKK FKINYTVANEATLLDTDYDNFLFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCR GSAHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;DIPQTKQDLELPKLAGTWHSMAMATNEISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKK FKINYTVANEATLLDTDYDNFLFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCR GSAHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ILE n 1 3 PRO n 1 4 GLN n 1 5 THR n 1 6 LYS n 1 7 GLN n 1 8 ASP n 1 9 LEU n 1 10 GLU n 1 11 LEU n 1 12 PRO n 1 13 LYS n 1 14 LEU n 1 15 ALA n 1 16 GLY n 1 17 THR n 1 18 TRP n 1 19 HIS n 1 20 SER n 1 21 MET n 1 22 ALA n 1 23 MET n 1 24 ALA n 1 25 THR n 1 26 ASN n 1 27 GLU n 1 28 ILE n 1 29 SER n 1 30 LEU n 1 31 MET n 1 32 ALA n 1 33 THR n 1 34 LEU n 1 35 LYS n 1 36 ALA n 1 37 PRO n 1 38 LEU n 1 39 ARG n 1 40 VAL n 1 41 HIS n 1 42 ILE n 1 43 THR n 1 44 SER n 1 45 LEU n 1 46 LEU n 1 47 PRO n 1 48 THR n 1 49 PRO n 1 50 GLU n 1 51 ASP n 1 52 ASN n 1 53 LEU n 1 54 GLU n 1 55 ILE n 1 56 VAL n 1 57 LEU n 1 58 HIS n 1 59 ARG n 1 60 TRP n 1 61 GLU n 1 62 ASN n 1 63 ASN n 1 64 SER n 1 65 CYS n 1 66 VAL n 1 67 GLU n 1 68 LYS n 1 69 LYS n 1 70 VAL n 1 71 LEU n 1 72 GLY n 1 73 GLU n 1 74 LYS n 1 75 THR n 1 76 GLU n 1 77 ASN n 1 78 PRO n 1 79 LYS n 1 80 LYS n 1 81 PHE n 1 82 LYS n 1 83 ILE n 1 84 ASN n 1 85 TYR n 1 86 THR n 1 87 VAL n 1 88 ALA n 1 89 ASN n 1 90 GLU n 1 91 ALA n 1 92 THR n 1 93 LEU n 1 94 LEU n 1 95 ASP n 1 96 THR n 1 97 ASP n 1 98 TYR n 1 99 ASP n 1 100 ASN n 1 101 PHE n 1 102 LEU n 1 103 PHE n 1 104 LEU n 1 105 CYS n 1 106 LEU n 1 107 GLN n 1 108 ASP n 1 109 THR n 1 110 THR n 1 111 THR n 1 112 PRO n 1 113 ILE n 1 114 GLN n 1 115 SER n 1 116 MET n 1 117 MET n 1 118 CYS n 1 119 GLN n 1 120 TYR n 1 121 LEU n 1 122 ALA n 1 123 ARG n 1 124 VAL n 1 125 LEU n 1 126 VAL n 1 127 GLU n 1 128 ASP n 1 129 ASP n 1 130 GLU n 1 131 ILE n 1 132 MET n 1 133 GLN n 1 134 GLY n 1 135 PHE n 1 136 ILE n 1 137 ARG n 1 138 ALA n 1 139 PHE n 1 140 ARG n 1 141 PRO n 1 142 LEU n 1 143 PRO n 1 144 ARG n 1 145 HIS n 1 146 LEU n 1 147 TRP n 1 148 TYR n 1 149 LEU n 1 150 LEU n 1 151 ASP n 1 152 LEU n 1 153 LYS n 1 154 GLN n 1 155 MET n 1 156 GLU n 1 157 GLU n 1 158 PRO n 1 159 CYS n 1 160 ARG n 1 161 GLY n 1 162 SER n 1 163 ALA n 1 164 HIS n 1 165 HIS n 1 166 HIS n 1 167 HIS n 1 168 HIS n 1 169 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PAEP _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pASK75-His _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PAEP_HUMAN _struct_ref.pdbx_db_accession P09466 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DIPQTKQDLELPKLAGTWHSMAMATNNISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKK FKINYTVANEATLLDTDYDNFLFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPCR F ; _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4R0B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P09466 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 180 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 162 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4R0B GLU A 27 ? UNP P09466 ASN 46 'ENGINEERED MUTATION' 28 1 1 4R0B GLY A 161 ? UNP P09466 PHE 180 'ENGINEERED MUTATION' 162 2 1 4R0B SER A 162 ? UNP P09466 ? ? 'EXPRESSION TAG' 163 3 1 4R0B ALA A 163 ? UNP P09466 ? ? 'EXPRESSION TAG' 164 4 1 4R0B HIS A 164 ? UNP P09466 ? ? 'EXPRESSION TAG' 165 5 1 4R0B HIS A 165 ? UNP P09466 ? ? 'EXPRESSION TAG' 166 6 1 4R0B HIS A 166 ? UNP P09466 ? ? 'EXPRESSION TAG' 167 7 1 4R0B HIS A 167 ? UNP P09466 ? ? 'EXPRESSION TAG' 168 8 1 4R0B HIS A 168 ? UNP P09466 ? ? 'EXPRESSION TAG' 169 9 1 4R0B HIS A 169 ? UNP P09466 ? ? 'EXPRESSION TAG' 170 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4R0B _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '25 %(w/v) PEG4000, 170 mM ammonium sulfate, 15 %(v/v) glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2013-07-25 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si-111 crystal' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.91841 _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.2 # _reflns.entry_id 4R0B _reflns.d_resolution_high 2.450 _reflns.number_obs 7678 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_netI_over_sigmaI 26.510 _reflns.pdbx_chi_squared 0.984 _reflns.percent_possible_obs 99.900 _reflns.B_iso_Wilson_estimate 57.242 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F -3.000 _reflns.d_resolution_low 30.000 _reflns.number_all 7678 _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 13.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.450 2.550 11792 ? 835 0.800 3.910 ? ? ? ? ? 100.000 1 1 2.550 2.800 22576 ? 1608 0.463 6.700 ? ? ? ? ? 100.000 2 1 2.800 3.000 13298 ? 945 0.247 11.890 ? ? ? ? ? 99.900 3 1 3.000 3.500 20867 ? 1515 0.111 23.240 ? ? ? ? ? 100.000 4 1 3.500 4.000 11676 ? 867 0.055 41.590 ? ? ? ? ? 100.000 5 1 4.000 6.000 16687 ? 1293 0.039 54.990 ? ? ? ? ? 99.900 6 1 6.000 8.000 4124 ? 340 0.038 55.080 ? ? ? ? ? 100.000 7 1 8.000 10.000 1436 ? 129 0.027 63.190 ? ? ? ? ? 100.000 8 1 10.000 30.000 1462 ? 146 0.027 61.980 ? ? ? ? ? 95.400 9 1 # _refine.entry_id 4R0B _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.4500 _refine.ls_d_res_low 28.5000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8800 _refine.ls_number_reflns_obs 7321 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2021 _refine.ls_R_factor_R_work 0.1996 _refine.ls_wR_factor_R_work 0.1861 _refine.ls_R_factor_R_free 0.2566 _refine.ls_wR_factor_R_free 0.2377 _refine.ls_percent_reflns_R_free 4.6000 _refine.ls_number_reflns_R_free 355 _refine.ls_number_reflns_R_work 7323 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 63.4400 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.6100 _refine.aniso_B[2][2] -0.6100 _refine.aniso_B[3][3] 1.9700 _refine.aniso_B[1][2] -0.3000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9540 _refine.correlation_coeff_Fo_to_Fc_free 0.9080 _refine.overall_SU_R_Cruickshank_DPI 0.3718 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free 0.2630 _refine.pdbx_overall_ESU_R 0.3730 _refine.pdbx_overall_ESU_R_Free 0.2660 _refine.overall_SU_ML 0.1900 _refine.overall_SU_B 18.0750 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8271 _refine.B_iso_max 175.590 _refine.B_iso_min 32.290 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1242 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 1267 _refine_hist.d_res_high 2.4500 _refine_hist.d_res_low 28.5000 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1271 0.007 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1227 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1728 1.175 1.978 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2835 0.702 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 152 7.234 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 58 39.196 25.172 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 234 14.207 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 16.166 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 199 0.066 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1396 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 270 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 611 2.619 3.787 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 610 2.603 3.780 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 762 4.681 7.074 ? ? # _refine_ls_shell.d_res_high 2.4500 _refine_ls_shell.d_res_low 2.5130 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 529 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2590 _refine_ls_shell.R_factor_R_free 0.3530 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 17 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 546 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4R0B _struct.title 'Structure of dimeric human glycodelin' _struct.pdbx_descriptor Glycodelin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R0B _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.text ;amniotic fluid, cumulus oophorus, endometrium, fallopian tube, fertilization, glycan presentation, human lipocalin, lipid binding protein, seminal fluid, sperm-egg binding ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 10 ? ALA A 15 ? GLU A 11 ALA A 16 5 ? 6 HELX_P HELX_P2 2 GLU A 27 ? MET A 31 ? GLU A 28 MET A 32 5 ? 5 HELX_P HELX_P3 3 ASP A 128 ? ARG A 140 ? ASP A 129 ARG A 141 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 159 SG ? ? A CYS 66 A CYS 160 1_555 ? ? ? ? ? ? ? 2.032 ? disulf2 disulf ? ? A CYS 105 SG ? ? ? 1_555 A CYS 118 SG ? ? A CYS 106 A CYS 119 1_555 ? ? ? ? ? ? ? 2.071 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 16 ? THR A 17 ? GLY A 17 THR A 18 A 2 HIS A 41 ? PRO A 47 ? HIS A 42 PRO A 48 A 3 LEU A 53 ? TRP A 60 ? LEU A 54 TRP A 61 A 4 CYS A 65 ? LYS A 74 ? CYS A 66 LYS A 75 A 5 LYS A 80 ? TYR A 85 ? LYS A 81 TYR A 86 A 6 ALA A 88 ? THR A 96 ? ALA A 89 THR A 97 A 7 PHE A 101 ? ASP A 108 ? PHE A 102 ASP A 109 A 8 SER A 115 ? ALA A 122 ? SER A 116 ALA A 123 A 9 HIS A 19 ? THR A 25 ? HIS A 20 THR A 26 A 10 TYR A 148 ? ASP A 151 ? TYR A 149 ASP A 152 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 16 ? N GLY A 17 O LEU A 45 ? O LEU A 46 A 2 3 N HIS A 41 ? N HIS A 42 O HIS A 58 ? O HIS A 59 A 3 4 N ARG A 59 ? N ARG A 60 O VAL A 66 ? O VAL A 67 A 4 5 N GLU A 73 ? N GLU A 74 O LYS A 82 ? O LYS A 83 A 5 6 N PHE A 81 ? N PHE A 82 O ALA A 91 ? O ALA A 92 A 6 7 N ASP A 95 ? N ASP A 96 O PHE A 103 ? O PHE A 104 A 7 8 N LEU A 106 ? N LEU A 107 O MET A 117 ? O MET A 118 A 8 9 O TYR A 120 ? O TYR A 121 N MET A 21 ? N MET A 22 A 9 10 N MET A 23 ? N MET A 24 O LEU A 150 ? O LEU A 151 # _atom_sites.entry_id 4R0B _atom_sites.fract_transf_matrix[1][1] 0.017543 _atom_sites.fract_transf_matrix[1][2] 0.010128 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020257 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005034 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 2 ? ? ? A . n A 1 2 ILE 2 3 ? ? ? A . n A 1 3 PRO 3 4 ? ? ? A . n A 1 4 GLN 4 5 ? ? ? A . n A 1 5 THR 5 6 ? ? ? A . n A 1 6 LYS 6 7 ? ? ? A . n A 1 7 GLN 7 8 8 GLN GLN A . n A 1 8 ASP 8 9 9 ASP ASP A . n A 1 9 LEU 9 10 10 LEU LEU A . n A 1 10 GLU 10 11 11 GLU GLU A . n A 1 11 LEU 11 12 12 LEU LEU A . n A 1 12 PRO 12 13 13 PRO PRO A . n A 1 13 LYS 13 14 14 LYS LYS A . n A 1 14 LEU 14 15 15 LEU LEU A . n A 1 15 ALA 15 16 16 ALA ALA A . n A 1 16 GLY 16 17 17 GLY GLY A . n A 1 17 THR 17 18 18 THR THR A . n A 1 18 TRP 18 19 19 TRP TRP A . n A 1 19 HIS 19 20 20 HIS HIS A . n A 1 20 SER 20 21 21 SER SER A . n A 1 21 MET 21 22 22 MET MET A . n A 1 22 ALA 22 23 23 ALA ALA A . n A 1 23 MET 23 24 24 MET MET A . n A 1 24 ALA 24 25 25 ALA ALA A . n A 1 25 THR 25 26 26 THR THR A . n A 1 26 ASN 26 27 27 ASN ASN A . n A 1 27 GLU 27 28 28 GLU GLU A . n A 1 28 ILE 28 29 29 ILE ILE A . n A 1 29 SER 29 30 30 SER SER A . n A 1 30 LEU 30 31 31 LEU LEU A . n A 1 31 MET 31 32 32 MET MET A . n A 1 32 ALA 32 33 33 ALA ALA A . n A 1 33 THR 33 34 34 THR THR A . n A 1 34 LEU 34 35 35 LEU LEU A . n A 1 35 LYS 35 36 36 LYS LYS A . n A 1 36 ALA 36 37 37 ALA ALA A . n A 1 37 PRO 37 38 38 PRO PRO A . n A 1 38 LEU 38 39 39 LEU LEU A . n A 1 39 ARG 39 40 40 ARG ARG A . n A 1 40 VAL 40 41 41 VAL VAL A . n A 1 41 HIS 41 42 42 HIS HIS A . n A 1 42 ILE 42 43 43 ILE ILE A . n A 1 43 THR 43 44 44 THR THR A . n A 1 44 SER 44 45 45 SER SER A . n A 1 45 LEU 45 46 46 LEU LEU A . n A 1 46 LEU 46 47 47 LEU LEU A . n A 1 47 PRO 47 48 48 PRO PRO A . n A 1 48 THR 48 49 49 THR THR A . n A 1 49 PRO 49 50 50 PRO PRO A . n A 1 50 GLU 50 51 51 GLU GLU A . n A 1 51 ASP 51 52 52 ASP ASP A . n A 1 52 ASN 52 53 53 ASN ASN A . n A 1 53 LEU 53 54 54 LEU LEU A . n A 1 54 GLU 54 55 55 GLU GLU A . n A 1 55 ILE 55 56 56 ILE ILE A . n A 1 56 VAL 56 57 57 VAL VAL A . n A 1 57 LEU 57 58 58 LEU LEU A . n A 1 58 HIS 58 59 59 HIS HIS A . n A 1 59 ARG 59 60 60 ARG ARG A . n A 1 60 TRP 60 61 61 TRP TRP A . n A 1 61 GLU 61 62 62 GLU GLU A . n A 1 62 ASN 62 63 63 ASN ASN A . n A 1 63 ASN 63 64 64 ASN ASN A . n A 1 64 SER 64 65 65 SER SER A . n A 1 65 CYS 65 66 66 CYS CYS A . n A 1 66 VAL 66 67 67 VAL VAL A . n A 1 67 GLU 67 68 68 GLU GLU A . n A 1 68 LYS 68 69 69 LYS LYS A . n A 1 69 LYS 69 70 70 LYS LYS A . n A 1 70 VAL 70 71 71 VAL VAL A . n A 1 71 LEU 71 72 72 LEU LEU A . n A 1 72 GLY 72 73 73 GLY GLY A . n A 1 73 GLU 73 74 74 GLU GLU A . n A 1 74 LYS 74 75 75 LYS LYS A . n A 1 75 THR 75 76 76 THR THR A . n A 1 76 GLU 76 77 77 GLU GLU A . n A 1 77 ASN 77 78 78 ASN ASN A . n A 1 78 PRO 78 79 79 PRO PRO A . n A 1 79 LYS 79 80 80 LYS LYS A . n A 1 80 LYS 80 81 81 LYS LYS A . n A 1 81 PHE 81 82 82 PHE PHE A . n A 1 82 LYS 82 83 83 LYS LYS A . n A 1 83 ILE 83 84 84 ILE ILE A . n A 1 84 ASN 84 85 85 ASN ASN A . n A 1 85 TYR 85 86 86 TYR TYR A . n A 1 86 THR 86 87 87 THR THR A . n A 1 87 VAL 87 88 88 VAL VAL A . n A 1 88 ALA 88 89 89 ALA ALA A . n A 1 89 ASN 89 90 90 ASN ASN A . n A 1 90 GLU 90 91 91 GLU GLU A . n A 1 91 ALA 91 92 92 ALA ALA A . n A 1 92 THR 92 93 93 THR THR A . n A 1 93 LEU 93 94 94 LEU LEU A . n A 1 94 LEU 94 95 95 LEU LEU A . n A 1 95 ASP 95 96 96 ASP ASP A . n A 1 96 THR 96 97 97 THR THR A . n A 1 97 ASP 97 98 98 ASP ASP A . n A 1 98 TYR 98 99 99 TYR TYR A . n A 1 99 ASP 99 100 100 ASP ASP A . n A 1 100 ASN 100 101 101 ASN ASN A . n A 1 101 PHE 101 102 102 PHE PHE A . n A 1 102 LEU 102 103 103 LEU LEU A . n A 1 103 PHE 103 104 104 PHE PHE A . n A 1 104 LEU 104 105 105 LEU LEU A . n A 1 105 CYS 105 106 106 CYS CYS A . n A 1 106 LEU 106 107 107 LEU LEU A . n A 1 107 GLN 107 108 108 GLN GLN A . n A 1 108 ASP 108 109 109 ASP ASP A . n A 1 109 THR 109 110 110 THR THR A . n A 1 110 THR 110 111 111 THR THR A . n A 1 111 THR 111 112 112 THR THR A . n A 1 112 PRO 112 113 113 PRO PRO A . n A 1 113 ILE 113 114 114 ILE ILE A . n A 1 114 GLN 114 115 115 GLN GLN A . n A 1 115 SER 115 116 116 SER SER A . n A 1 116 MET 116 117 117 MET MET A . n A 1 117 MET 117 118 118 MET MET A . n A 1 118 CYS 118 119 119 CYS CYS A . n A 1 119 GLN 119 120 120 GLN GLN A . n A 1 120 TYR 120 121 121 TYR TYR A . n A 1 121 LEU 121 122 122 LEU LEU A . n A 1 122 ALA 122 123 123 ALA ALA A . n A 1 123 ARG 123 124 124 ARG ARG A . n A 1 124 VAL 124 125 125 VAL VAL A . n A 1 125 LEU 125 126 126 LEU LEU A . n A 1 126 VAL 126 127 127 VAL VAL A . n A 1 127 GLU 127 128 128 GLU GLU A . n A 1 128 ASP 128 129 129 ASP ASP A . n A 1 129 ASP 129 130 130 ASP ASP A . n A 1 130 GLU 130 131 131 GLU GLU A . n A 1 131 ILE 131 132 132 ILE ILE A . n A 1 132 MET 132 133 133 MET MET A . n A 1 133 GLN 133 134 134 GLN GLN A . n A 1 134 GLY 134 135 135 GLY GLY A . n A 1 135 PHE 135 136 136 PHE PHE A . n A 1 136 ILE 136 137 137 ILE ILE A . n A 1 137 ARG 137 138 138 ARG ARG A . n A 1 138 ALA 138 139 139 ALA ALA A . n A 1 139 PHE 139 140 140 PHE PHE A . n A 1 140 ARG 140 141 141 ARG ARG A . n A 1 141 PRO 141 142 142 PRO PRO A . n A 1 142 LEU 142 143 143 LEU LEU A . n A 1 143 PRO 143 144 144 PRO PRO A . n A 1 144 ARG 144 145 145 ARG ARG A . n A 1 145 HIS 145 146 146 HIS HIS A . n A 1 146 LEU 146 147 147 LEU LEU A . n A 1 147 TRP 147 148 148 TRP TRP A . n A 1 148 TYR 148 149 149 TYR TYR A . n A 1 149 LEU 149 150 150 LEU LEU A . n A 1 150 LEU 150 151 151 LEU LEU A . n A 1 151 ASP 151 152 152 ASP ASP A . n A 1 152 LEU 152 153 153 LEU LEU A . n A 1 153 LYS 153 154 154 LYS LYS A . n A 1 154 GLN 154 155 155 GLN GLN A . n A 1 155 MET 155 156 156 MET MET A . n A 1 156 GLU 156 157 157 GLU GLU A . n A 1 157 GLU 157 158 158 GLU GLU A . n A 1 158 PRO 158 159 159 PRO PRO A . n A 1 159 CYS 159 160 160 CYS CYS A . n A 1 160 ARG 160 161 ? ? ? A . n A 1 161 GLY 161 162 ? ? ? A . n A 1 162 SER 162 163 ? ? ? A . n A 1 163 ALA 163 164 ? ? ? A . n A 1 164 HIS 164 165 ? ? ? A . n A 1 165 HIS 165 166 ? ? ? A . n A 1 166 HIS 166 167 ? ? ? A . n A 1 167 HIS 167 168 ? ? ? A . n A 1 168 HIS 168 169 ? ? ? A . n A 1 169 HIS 169 170 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 1 HOH HOH A . B 2 HOH 2 202 2 HOH HOH A . B 2 HOH 3 203 3 HOH HOH A . B 2 HOH 4 204 4 HOH HOH A . B 2 HOH 5 205 5 HOH HOH A . B 2 HOH 6 206 6 HOH HOH A . B 2 HOH 7 207 7 HOH HOH A . B 2 HOH 8 208 8 HOH HOH A . B 2 HOH 9 209 9 HOH HOH A . B 2 HOH 10 210 10 HOH HOH A . B 2 HOH 11 211 11 HOH HOH A . B 2 HOH 12 212 12 HOH HOH A . B 2 HOH 13 213 13 HOH HOH A . B 2 HOH 14 214 14 HOH HOH A . B 2 HOH 15 215 15 HOH HOH A . B 2 HOH 16 216 16 HOH HOH A . B 2 HOH 17 217 17 HOH HOH A . B 2 HOH 18 218 18 HOH HOH A . B 2 HOH 19 219 19 HOH HOH A . B 2 HOH 20 220 20 HOH HOH A . B 2 HOH 21 221 21 HOH HOH A . B 2 HOH 22 222 22 HOH HOH A . B 2 HOH 23 223 23 HOH HOH A . B 2 HOH 24 224 24 HOH HOH A . B 2 HOH 25 225 25 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2360 ? 1 MORE -5 ? 1 'SSA (A^2)' 14860 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -33.1068333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-10 2 'Structure model' 1 1 2015-02-18 3 'Structure model' 1 2 2017-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -13.2353 21.8613 -7.3391 0.0349 0.2125 0.0701 0.0474 -0.0150 -0.1130 5.9629 3.9496 3.2727 0.3182 0.6657 1.9810 0.0622 0.0100 -0.0722 0.3017 0.0013 -0.0656 -0.2448 -0.0477 0.1601 'X-RAY DIFFRACTION' 2 ? refined -19.5438 6.4622 -1.3720 0.5621 0.4754 0.4551 0.0464 -0.0543 -0.0869 1.3820 3.3156 8.4848 2.1401 -3.4226 -5.3000 -0.0485 0.1533 -0.1048 0.1105 0.0319 0.0737 -0.0757 0.1619 -0.3089 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 8 A 153 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 154 A 160 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 REFMAC 5.8.0073 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 MAR345 . ? ? ? ? 'data collection' ? ? ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 32 ? ? -141.07 -17.24 2 1 GLU A 62 ? ? -165.78 118.34 3 1 THR A 87 ? ? 45.18 -116.79 4 1 TYR A 99 ? ? 72.29 -51.08 5 1 ASN A 101 ? ? -129.85 -50.29 6 1 PRO A 144 ? ? -63.05 82.96 7 1 ARG A 145 ? ? -103.09 56.04 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 2 ? A ASP 1 2 1 Y 1 A ILE 3 ? A ILE 2 3 1 Y 1 A PRO 4 ? A PRO 3 4 1 Y 1 A GLN 5 ? A GLN 4 5 1 Y 1 A THR 6 ? A THR 5 6 1 Y 1 A LYS 7 ? A LYS 6 7 1 Y 1 A ARG 161 ? A ARG 160 8 1 Y 1 A GLY 162 ? A GLY 161 9 1 Y 1 A SER 163 ? A SER 162 10 1 Y 1 A ALA 164 ? A ALA 163 11 1 Y 1 A HIS 165 ? A HIS 164 12 1 Y 1 A HIS 166 ? A HIS 165 13 1 Y 1 A HIS 167 ? A HIS 166 14 1 Y 1 A HIS 168 ? A HIS 167 15 1 Y 1 A HIS 169 ? A HIS 168 16 1 Y 1 A HIS 170 ? A HIS 169 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #