HEADER UNKNOWN FUNCTION 31-JUL-14 4R0G TITLE CRYSTAL STRUCTURE OF LPG0393 FROM LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: LPG0393 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. SOURCE 3 PHILADELPHIA 1; SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 GENE: LPG0393; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS VPS9, GEF, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.SOHN,H.C.SHIN,B.H.OH REVDAT 2 20-MAR-24 4R0G 1 REMARK REVDAT 1 15-APR-15 4R0G 0 JRNL AUTH Y.S.SOHN,H.C.SHIN,W.S.PARK,J.GE,C.H.KIM,B.L.LEE,W.D.HEO, JRNL AUTH 2 J.U.JUNG,D.J.RIGDEN,B.H.OH JRNL TITL LPG0393 OF LEGIONELLA PNEUMOPHILA IS A GUANINE-NUCLEOTIDE JRNL TITL 2 EXCHANGE FACTOR FOR RAB5, RAB21 AND RAB22 JRNL REF PLOS ONE V. 10 18683 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 25821953 JRNL DOI 10.1371/JOURNAL.PONE.0118683 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.820 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 36978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0421 - 6.4935 0.96 2912 144 0.1877 0.2107 REMARK 3 2 6.4935 - 5.1599 0.98 2845 163 0.2096 0.2572 REMARK 3 3 5.1599 - 4.5093 0.98 2826 137 0.1756 0.2174 REMARK 3 4 4.5093 - 4.0978 0.97 2763 152 0.1882 0.2489 REMARK 3 5 4.0978 - 3.8045 0.95 2688 139 0.2130 0.2871 REMARK 3 6 3.8045 - 3.5804 0.97 2767 150 0.2332 0.2734 REMARK 3 7 3.5804 - 3.4013 0.92 2597 125 0.2431 0.3201 REMARK 3 8 3.4013 - 3.2534 0.90 2524 143 0.2560 0.3060 REMARK 3 9 3.2534 - 3.1282 0.87 2437 146 0.2698 0.3438 REMARK 3 10 3.1282 - 3.0203 0.83 2320 125 0.2740 0.3322 REMARK 3 11 3.0203 - 2.9259 0.80 2216 126 0.2844 0.3187 REMARK 3 12 2.9259 - 2.8424 0.76 2118 139 0.2971 0.3407 REMARK 3 13 2.8424 - 2.7676 0.74 2088 108 0.3253 0.3657 REMARK 3 14 2.7676 - 2.7001 0.70 1975 102 0.3657 0.3971 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8229 REMARK 3 ANGLE : 1.268 11166 REMARK 3 CHIRALITY : 0.089 1275 REMARK 3 PLANARITY : 0.005 1390 REMARK 3 DIHEDRAL : 17.479 2948 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43800 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 8000, 0.1M HEPES, 8% ETHYLENE REMARK 280 GLYCOL, 13% GLYCEROL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.81800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.97900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.85300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.97900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.81800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.85300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR DETERMINED BIOLOGICAL ASSEMBLY: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 33 REMARK 465 SER A 34 REMARK 465 ASP A 35 REMARK 465 LYS A 36 REMARK 465 ASN A 37 REMARK 465 GLY A 259 REMARK 465 LEU A 260 REMARK 465 SER A 261 REMARK 465 ALA A 262 REMARK 465 ARG A 263 REMARK 465 PHE A 264 REMARK 465 PHE A 265 REMARK 465 SER A 266 REMARK 465 ILE A 267 REMARK 465 LEU A 268 REMARK 465 GLN A 269 REMARK 465 PRO A 270 REMARK 465 PRO A 271 REMARK 465 SER A 272 REMARK 465 PRO A 273 REMARK 465 PRO A 274 REMARK 465 LEU A 275 REMARK 465 ASN A 276 REMARK 465 ILE A 277 REMARK 465 ASN A 278 REMARK 465 SER A 279 REMARK 465 ASP A 280 REMARK 465 THR A 281 REMARK 465 ASP A 282 REMARK 465 LYS A 283 REMARK 465 ASN A 284 REMARK 465 PRO A 285 REMARK 465 LYS A 286 REMARK 465 VAL A 287 REMARK 465 GLY B 32 REMARK 465 LYS B 33 REMARK 465 SER B 34 REMARK 465 ASP B 35 REMARK 465 LYS B 36 REMARK 465 ASN B 37 REMARK 465 GLN B 38 REMARK 465 HIS B 186 REMARK 465 LEU B 187 REMARK 465 PRO B 188 REMARK 465 THR B 189 REMARK 465 ASP B 190 REMARK 465 GLN B 191 REMARK 465 LEU B 192 REMARK 465 LYS B 193 REMARK 465 SER B 194 REMARK 465 SER B 195 REMARK 465 GLN B 232 REMARK 465 PRO B 233 REMARK 465 LEU B 260 REMARK 465 SER B 261 REMARK 465 ALA B 262 REMARK 465 ARG B 263 REMARK 465 PHE B 264 REMARK 465 PHE B 265 REMARK 465 SER B 266 REMARK 465 ILE B 267 REMARK 465 LEU B 268 REMARK 465 GLN B 269 REMARK 465 PRO B 270 REMARK 465 PRO B 271 REMARK 465 SER B 272 REMARK 465 PRO B 273 REMARK 465 PRO B 274 REMARK 465 LEU B 275 REMARK 465 ASN B 276 REMARK 465 ILE B 277 REMARK 465 ASN B 278 REMARK 465 SER B 279 REMARK 465 ASP B 280 REMARK 465 THR B 281 REMARK 465 ASP B 282 REMARK 465 LYS B 283 REMARK 465 ASN B 284 REMARK 465 PRO B 285 REMARK 465 LYS B 286 REMARK 465 VAL B 287 REMARK 465 LYS C 33 REMARK 465 SER C 34 REMARK 465 ASP C 35 REMARK 465 LYS C 36 REMARK 465 ASN C 37 REMARK 465 GLN C 38 REMARK 465 GLY C 259 REMARK 465 LEU C 260 REMARK 465 SER C 261 REMARK 465 ALA C 262 REMARK 465 ARG C 263 REMARK 465 PHE C 264 REMARK 465 PHE C 265 REMARK 465 SER C 266 REMARK 465 ILE C 267 REMARK 465 LEU C 268 REMARK 465 GLN C 269 REMARK 465 PRO C 270 REMARK 465 PRO C 271 REMARK 465 SER C 272 REMARK 465 PRO C 273 REMARK 465 PRO C 274 REMARK 465 LEU C 275 REMARK 465 ASN C 276 REMARK 465 ILE C 277 REMARK 465 ASN C 278 REMARK 465 SER C 279 REMARK 465 ASP C 280 REMARK 465 THR C 281 REMARK 465 ASP C 282 REMARK 465 LYS C 283 REMARK 465 ASN C 284 REMARK 465 PRO C 285 REMARK 465 LYS C 286 REMARK 465 VAL C 287 REMARK 465 ASP D 35 REMARK 465 LYS D 36 REMARK 465 ASN D 37 REMARK 465 GLN D 38 REMARK 465 TYR D 129 REMARK 465 LEU D 130 REMARK 465 GLU D 131 REMARK 465 THR D 258 REMARK 465 GLY D 259 REMARK 465 LEU D 260 REMARK 465 SER D 261 REMARK 465 ALA D 262 REMARK 465 ARG D 263 REMARK 465 PHE D 264 REMARK 465 PHE D 265 REMARK 465 SER D 266 REMARK 465 ILE D 267 REMARK 465 LEU D 268 REMARK 465 GLN D 269 REMARK 465 PRO D 270 REMARK 465 PRO D 271 REMARK 465 SER D 272 REMARK 465 PRO D 273 REMARK 465 PRO D 274 REMARK 465 LEU D 275 REMARK 465 ASN D 276 REMARK 465 ILE D 277 REMARK 465 ASN D 278 REMARK 465 SER D 279 REMARK 465 ASP D 280 REMARK 465 THR D 281 REMARK 465 ASP D 282 REMARK 465 LYS D 283 REMARK 465 ASN D 284 REMARK 465 PRO D 285 REMARK 465 LYS D 286 REMARK 465 VAL D 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 GLN A 191 CG CD OE1 NE2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 THR A 258 OG1 CG2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 ASP B 41 CG OD1 OD2 REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 ARG B 196 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 197 CG1 CG2 CD1 REMARK 470 SER B 198 OG REMARK 470 LYS B 205 CG CD CE NZ REMARK 470 GLN B 215 CG CD OE1 NE2 REMARK 470 ASP B 216 CG OD1 OD2 REMARK 470 VAL B 223 CG1 CG2 REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 LYS B 227 CG CD CE NZ REMARK 470 LEU B 228 CG CD1 CD2 REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 ASN B 252 CG OD1 ND2 REMARK 470 ARG B 255 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 16 CG CD CE NZ REMARK 470 GLU C 39 CG CD OE1 OE2 REMARK 470 LYS C 112 CG CD CE NZ REMARK 470 LYS C 113 CG CD CE NZ REMARK 470 LYS C 132 CG CD CE NZ REMARK 470 ASP C 190 CG OD1 OD2 REMARK 470 GLN C 191 CG CD OE1 NE2 REMARK 470 LYS C 193 CG CD CE NZ REMARK 470 LYS D 6 CG CD CE NZ REMARK 470 GLU D 29 CG CD OE1 OE2 REMARK 470 LYS D 33 CG CD CE NZ REMARK 470 GLU D 39 CG CD OE1 OE2 REMARK 470 MET D 43 CG SD CE REMARK 470 SER D 45 OG REMARK 470 LEU D 46 CG CD1 CD2 REMARK 470 LEU D 47 CG CD1 CD2 REMARK 470 LYS D 63 CG CD CE NZ REMARK 470 LYS D 112 CG CD CE NZ REMARK 470 LYS D 113 CG CD CE NZ REMARK 470 MET D 123 CG SD CE REMARK 470 MET D 125 CG SD CE REMARK 470 ARG D 134 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 172 CG CD CE NZ REMARK 470 LEU D 187 CG CD1 CD2 REMARK 470 LYS D 193 CG CD CE NZ REMARK 470 LYS D 205 CG CD CE NZ REMARK 470 GLU D 209 CG CD OE1 OE2 REMARK 470 ARG D 255 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 257 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 76 NH1 ARG A 79 2.14 REMARK 500 O LEU B 122 ND2 ASN B 126 2.18 REMARK 500 O ASP D 163 OG SER D 167 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 80 -128.35 46.57 REMARK 500 ARG B 76 65.86 37.77 REMARK 500 GLU B 80 -125.32 61.69 REMARK 500 GLU B 238 -74.19 -57.01 REMARK 500 ILE B 244 -71.50 -94.25 REMARK 500 ARG C 76 73.20 39.64 REMARK 500 GLU C 80 -130.51 53.03 REMARK 500 LEU C 100 -60.64 -97.52 REMARK 500 ASN C 103 -2.48 78.92 REMARK 500 SER C 111 -61.12 -124.80 REMARK 500 TYR C 129 -70.96 -80.79 REMARK 500 SER D 3 -123.41 43.84 REMARK 500 GLU D 80 -121.68 61.69 REMARK 500 SER D 184 -99.92 51.15 REMARK 500 ALA D 185 -7.16 95.00 REMARK 500 GLN D 232 73.10 52.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 4R0G A 1 287 UNP Q5ZYH9 Q5ZYH9_LEGPH 1 287 DBREF 4R0G B 1 287 UNP Q5ZYH9 Q5ZYH9_LEGPH 1 287 DBREF 4R0G C 1 287 UNP Q5ZYH9 Q5ZYH9_LEGPH 1 287 DBREF 4R0G D 1 287 UNP Q5ZYH9 Q5ZYH9_LEGPH 1 287 SEQRES 1 A 287 MET LEU SER SER THR LYS GLU TYR LEU GLN ALA LEU ARG SEQRES 2 A 287 ASP GLY LYS TYR LEU LEU PHE LEU GLN TRP PRO LYS PHE SEQRES 3 A 287 ILE ALA GLU TYR TYR GLY LYS SER ASP LYS ASN GLN GLU SEQRES 4 A 287 ALA ASP GLU MET VAL SER LEU LEU ILE PHE GLU TRP LEU SEQRES 5 A 287 ASN ASN GLY PHE CYS LEU ASP ASP ILE LYS LYS PHE ALA SEQRES 6 A 287 ILE LEU TYR ALA VAL HIS GLU MET GLU SER ARG PRO LEU SEQRES 7 A 287 ARG GLU GLY LEU SER TYR ALA LEU THR THR ILE SER ILE SEQRES 8 A 287 ALA LEU PHE PRO CYS MET VAL TYR LEU THR ASN ASN LEU SEQRES 9 A 287 GLN GLU HIS TYR ILE THR SER LYS LYS LEU SER SER LYS SEQRES 10 A 287 GLU VAL LEU GLN LEU MET THR MET ASN ASN ALA TYR LEU SEQRES 11 A 287 GLU LYS GLN ARG PHE VAL GLU PHE LEU GLY GLN GLU GLN SEQRES 12 A 287 ASP LYS PHE PHE THR TRP VAL LYS GLU ALA ASP SER SER SEQRES 13 A 287 ALA VAL SER LYS ALA PHE ASP GLN ILE TYR SER VAL THR SEQRES 14 A 287 TYR LEU LYS TYR LEU ILE GLU ASP TYR LEU SER LEU LEU SEQRES 15 A 287 GLU SER ALA HIS LEU PRO THR ASP GLN LEU LYS SER SER SEQRES 16 A 287 ARG ILE SER LEU VAL VAL ARG LEU ALA LYS TYR LEU HIS SEQRES 17 A 287 GLU GLN THR GLU LEU THR GLN ASP VAL HIS ASP GLU ILE SEQRES 18 A 287 ALA VAL TYR VAL LYS LYS LEU TRP GLU MET GLN PRO ALA SEQRES 19 A 287 GLU PHE GLU GLU GLU PHE LEU LYS LYS ILE SER PRO LEU SEQRES 20 A 287 PRO PHE ILE ASP ASN THR VAL ARG ILE LEU THR GLY LEU SEQRES 21 A 287 SER ALA ARG PHE PHE SER ILE LEU GLN PRO PRO SER PRO SEQRES 22 A 287 PRO LEU ASN ILE ASN SER ASP THR ASP LYS ASN PRO LYS SEQRES 23 A 287 VAL SEQRES 1 B 287 MET LEU SER SER THR LYS GLU TYR LEU GLN ALA LEU ARG SEQRES 2 B 287 ASP GLY LYS TYR LEU LEU PHE LEU GLN TRP PRO LYS PHE SEQRES 3 B 287 ILE ALA GLU TYR TYR GLY LYS SER ASP LYS ASN GLN GLU SEQRES 4 B 287 ALA ASP GLU MET VAL SER LEU LEU ILE PHE GLU TRP LEU SEQRES 5 B 287 ASN ASN GLY PHE CYS LEU ASP ASP ILE LYS LYS PHE ALA SEQRES 6 B 287 ILE LEU TYR ALA VAL HIS GLU MET GLU SER ARG PRO LEU SEQRES 7 B 287 ARG GLU GLY LEU SER TYR ALA LEU THR THR ILE SER ILE SEQRES 8 B 287 ALA LEU PHE PRO CYS MET VAL TYR LEU THR ASN ASN LEU SEQRES 9 B 287 GLN GLU HIS TYR ILE THR SER LYS LYS LEU SER SER LYS SEQRES 10 B 287 GLU VAL LEU GLN LEU MET THR MET ASN ASN ALA TYR LEU SEQRES 11 B 287 GLU LYS GLN ARG PHE VAL GLU PHE LEU GLY GLN GLU GLN SEQRES 12 B 287 ASP LYS PHE PHE THR TRP VAL LYS GLU ALA ASP SER SER SEQRES 13 B 287 ALA VAL SER LYS ALA PHE ASP GLN ILE TYR SER VAL THR SEQRES 14 B 287 TYR LEU LYS TYR LEU ILE GLU ASP TYR LEU SER LEU LEU SEQRES 15 B 287 GLU SER ALA HIS LEU PRO THR ASP GLN LEU LYS SER SER SEQRES 16 B 287 ARG ILE SER LEU VAL VAL ARG LEU ALA LYS TYR LEU HIS SEQRES 17 B 287 GLU GLN THR GLU LEU THR GLN ASP VAL HIS ASP GLU ILE SEQRES 18 B 287 ALA VAL TYR VAL LYS LYS LEU TRP GLU MET GLN PRO ALA SEQRES 19 B 287 GLU PHE GLU GLU GLU PHE LEU LYS LYS ILE SER PRO LEU SEQRES 20 B 287 PRO PHE ILE ASP ASN THR VAL ARG ILE LEU THR GLY LEU SEQRES 21 B 287 SER ALA ARG PHE PHE SER ILE LEU GLN PRO PRO SER PRO SEQRES 22 B 287 PRO LEU ASN ILE ASN SER ASP THR ASP LYS ASN PRO LYS SEQRES 23 B 287 VAL SEQRES 1 C 287 MET LEU SER SER THR LYS GLU TYR LEU GLN ALA LEU ARG SEQRES 2 C 287 ASP GLY LYS TYR LEU LEU PHE LEU GLN TRP PRO LYS PHE SEQRES 3 C 287 ILE ALA GLU TYR TYR GLY LYS SER ASP LYS ASN GLN GLU SEQRES 4 C 287 ALA ASP GLU MET VAL SER LEU LEU ILE PHE GLU TRP LEU SEQRES 5 C 287 ASN ASN GLY PHE CYS LEU ASP ASP ILE LYS LYS PHE ALA SEQRES 6 C 287 ILE LEU TYR ALA VAL HIS GLU MET GLU SER ARG PRO LEU SEQRES 7 C 287 ARG GLU GLY LEU SER TYR ALA LEU THR THR ILE SER ILE SEQRES 8 C 287 ALA LEU PHE PRO CYS MET VAL TYR LEU THR ASN ASN LEU SEQRES 9 C 287 GLN GLU HIS TYR ILE THR SER LYS LYS LEU SER SER LYS SEQRES 10 C 287 GLU VAL LEU GLN LEU MET THR MET ASN ASN ALA TYR LEU SEQRES 11 C 287 GLU LYS GLN ARG PHE VAL GLU PHE LEU GLY GLN GLU GLN SEQRES 12 C 287 ASP LYS PHE PHE THR TRP VAL LYS GLU ALA ASP SER SER SEQRES 13 C 287 ALA VAL SER LYS ALA PHE ASP GLN ILE TYR SER VAL THR SEQRES 14 C 287 TYR LEU LYS TYR LEU ILE GLU ASP TYR LEU SER LEU LEU SEQRES 15 C 287 GLU SER ALA HIS LEU PRO THR ASP GLN LEU LYS SER SER SEQRES 16 C 287 ARG ILE SER LEU VAL VAL ARG LEU ALA LYS TYR LEU HIS SEQRES 17 C 287 GLU GLN THR GLU LEU THR GLN ASP VAL HIS ASP GLU ILE SEQRES 18 C 287 ALA VAL TYR VAL LYS LYS LEU TRP GLU MET GLN PRO ALA SEQRES 19 C 287 GLU PHE GLU GLU GLU PHE LEU LYS LYS ILE SER PRO LEU SEQRES 20 C 287 PRO PHE ILE ASP ASN THR VAL ARG ILE LEU THR GLY LEU SEQRES 21 C 287 SER ALA ARG PHE PHE SER ILE LEU GLN PRO PRO SER PRO SEQRES 22 C 287 PRO LEU ASN ILE ASN SER ASP THR ASP LYS ASN PRO LYS SEQRES 23 C 287 VAL SEQRES 1 D 287 MET LEU SER SER THR LYS GLU TYR LEU GLN ALA LEU ARG SEQRES 2 D 287 ASP GLY LYS TYR LEU LEU PHE LEU GLN TRP PRO LYS PHE SEQRES 3 D 287 ILE ALA GLU TYR TYR GLY LYS SER ASP LYS ASN GLN GLU SEQRES 4 D 287 ALA ASP GLU MET VAL SER LEU LEU ILE PHE GLU TRP LEU SEQRES 5 D 287 ASN ASN GLY PHE CYS LEU ASP ASP ILE LYS LYS PHE ALA SEQRES 6 D 287 ILE LEU TYR ALA VAL HIS GLU MET GLU SER ARG PRO LEU SEQRES 7 D 287 ARG GLU GLY LEU SER TYR ALA LEU THR THR ILE SER ILE SEQRES 8 D 287 ALA LEU PHE PRO CYS MET VAL TYR LEU THR ASN ASN LEU SEQRES 9 D 287 GLN GLU HIS TYR ILE THR SER LYS LYS LEU SER SER LYS SEQRES 10 D 287 GLU VAL LEU GLN LEU MET THR MET ASN ASN ALA TYR LEU SEQRES 11 D 287 GLU LYS GLN ARG PHE VAL GLU PHE LEU GLY GLN GLU GLN SEQRES 12 D 287 ASP LYS PHE PHE THR TRP VAL LYS GLU ALA ASP SER SER SEQRES 13 D 287 ALA VAL SER LYS ALA PHE ASP GLN ILE TYR SER VAL THR SEQRES 14 D 287 TYR LEU LYS TYR LEU ILE GLU ASP TYR LEU SER LEU LEU SEQRES 15 D 287 GLU SER ALA HIS LEU PRO THR ASP GLN LEU LYS SER SER SEQRES 16 D 287 ARG ILE SER LEU VAL VAL ARG LEU ALA LYS TYR LEU HIS SEQRES 17 D 287 GLU GLN THR GLU LEU THR GLN ASP VAL HIS ASP GLU ILE SEQRES 18 D 287 ALA VAL TYR VAL LYS LYS LEU TRP GLU MET GLN PRO ALA SEQRES 19 D 287 GLU PHE GLU GLU GLU PHE LEU LYS LYS ILE SER PRO LEU SEQRES 20 D 287 PRO PHE ILE ASP ASN THR VAL ARG ILE LEU THR GLY LEU SEQRES 21 D 287 SER ALA ARG PHE PHE SER ILE LEU GLN PRO PRO SER PRO SEQRES 22 D 287 PRO LEU ASN ILE ASN SER ASP THR ASP LYS ASN PRO LYS SEQRES 23 D 287 VAL HELIX 1 1 SER A 4 GLY A 15 1 12 HELIX 2 2 LYS A 16 LEU A 21 1 6 HELIX 3 3 GLN A 22 TYR A 31 1 10 HELIX 4 4 GLU A 39 ASN A 54 1 16 HELIX 5 5 CYS A 57 GLU A 72 1 16 HELIX 6 6 ARG A 79 ASN A 102 1 24 HELIX 7 7 LEU A 104 ILE A 109 5 6 HELIX 8 8 SER A 115 ASN A 127 1 13 HELIX 9 9 ALA A 128 LEU A 130 5 3 HELIX 10 10 GLU A 131 GLU A 152 1 22 HELIX 11 11 ASP A 154 SER A 184 1 31 HELIX 12 12 LEU A 192 GLU A 209 1 18 HELIX 13 13 THR A 214 GLU A 230 1 17 HELIX 14 14 ALA A 234 SER A 245 1 12 HELIX 15 15 PRO A 248 LEU A 257 1 10 HELIX 16 16 SER B 4 ASP B 14 1 11 HELIX 17 17 LEU B 19 LEU B 21 5 3 HELIX 18 18 GLN B 22 TYR B 30 1 9 HELIX 19 19 ALA B 40 ASN B 54 1 15 HELIX 20 20 CYS B 57 MET B 73 1 17 HELIX 21 21 GLU B 80 ASN B 102 1 23 HELIX 22 22 LEU B 104 ILE B 109 1 6 HELIX 23 23 SER B 115 ASN B 127 1 13 HELIX 24 24 ALA B 128 LEU B 130 5 3 HELIX 25 25 GLU B 131 GLU B 152 1 22 HELIX 26 26 ASP B 154 SER B 184 1 31 HELIX 27 27 ILE B 197 GLN B 210 1 14 HELIX 28 28 ASP B 216 GLU B 230 1 15 HELIX 29 29 GLU B 237 SER B 245 1 9 HELIX 30 30 SER B 245 THR B 258 1 14 HELIX 31 31 SER C 4 GLY C 15 1 12 HELIX 32 32 LYS C 16 LEU C 21 1 6 HELIX 33 33 GLN C 22 TYR C 31 1 10 HELIX 34 34 ALA C 40 ASN C 54 1 15 HELIX 35 35 CYS C 57 GLU C 72 1 16 HELIX 36 36 ARG C 79 ASN C 102 1 24 HELIX 37 37 ASN C 103 HIS C 107 5 5 HELIX 38 38 SER C 115 ASN C 126 1 12 HELIX 39 39 ASN C 127 TYR C 129 5 3 HELIX 40 40 ARG C 134 GLU C 152 1 19 HELIX 41 41 ASP C 154 ALA C 185 1 32 HELIX 42 42 GLN C 191 GLU C 209 1 19 HELIX 43 43 THR C 214 MET C 231 1 18 HELIX 44 44 ALA C 234 SER C 245 1 12 HELIX 45 45 LEU C 247 THR C 258 1 12 HELIX 46 46 SER D 4 GLY D 15 1 12 HELIX 47 47 LYS D 16 LEU D 21 1 6 HELIX 48 48 TRP D 23 GLY D 32 1 10 HELIX 49 49 ALA D 40 ASN D 53 1 14 HELIX 50 50 CYS D 57 GLU D 72 1 16 HELIX 51 51 GLU D 80 ASN D 103 1 24 HELIX 52 52 LEU D 104 TYR D 108 5 5 HELIX 53 53 SER D 115 ALA D 128 1 14 HELIX 54 54 GLN D 133 LYS D 151 1 19 HELIX 55 55 ASP D 154 SER D 184 1 31 HELIX 56 56 GLN D 191 GLU D 209 1 19 HELIX 57 57 THR D 214 GLU D 230 1 17 HELIX 58 58 ALA D 234 SER D 245 1 12 HELIX 59 59 SER D 245 ARG D 255 1 11 CRYST1 79.636 111.706 167.958 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012557 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005954 0.00000