HEADER HYDROLASE 31-JUL-14 4R0K TITLE CRYSTAL STRUCTURE OF A PUTATIVE DIPEPTIDYL-PEPTIDASE VI (BT_1314) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDYL-PEPTIDASE VI; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_1314; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS CYSTEINE PROTEINASE FOLD, SH3-LIKE BARREL, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4R0K 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4R0K 1 JRNL REVDAT 2 22-NOV-17 4R0K 1 REMARK REVDAT 1 20-AUG-14 4R0K 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE DIPEPTIDYL-PEPTIDASE VI JRNL TITL 2 (BT_1314) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.75 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 66391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3280 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.59 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4841 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2122 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4605 REMARK 3 BIN R VALUE (WORKING SET) : 0.2104 REMARK 3 BIN FREE R VALUE : 0.2481 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.88 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 236 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4883 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 568 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.97720 REMARK 3 B22 (A**2) : -10.25500 REMARK 3 B33 (A**2) : 2.27780 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.71600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.201 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5228 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7106 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3036 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 119 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 801 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5228 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 666 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6401 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.21 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 1.76 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|26 - 328} REMARK 3 ORIGIN FOR THE GROUP (A): 39.1106 30.1179 82.5909 REMARK 3 T TENSOR REMARK 3 T11: -0.1221 T22: 0.0268 REMARK 3 T33: -0.1101 T12: 0.0059 REMARK 3 T13: -0.0060 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.6304 L22: 0.3102 REMARK 3 L33: 1.1295 L12: -0.0128 REMARK 3 L13: -0.0821 L23: 0.0397 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: 0.2860 S13: 0.0812 REMARK 3 S21: 0.0133 S22: -0.0306 S23: 0.0289 REMARK 3 S31: -0.0340 S32: -0.2952 S33: 0.0117 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|25 - 328} REMARK 3 ORIGIN FOR THE GROUP (A): 66.6434 29.7089 80.8301 REMARK 3 T TENSOR REMARK 3 T11: -0.0716 T22: -0.0137 REMARK 3 T33: -0.0706 T12: 0.0044 REMARK 3 T13: -0.0054 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.2511 L22: 0.2584 REMARK 3 L33: 0.9780 L12: -0.0223 REMARK 3 L13: 0.0186 L23: -0.0595 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.1986 S13: 0.0636 REMARK 3 S21: -0.0111 S22: -0.0021 S23: -0.0216 REMARK 3 S31: -0.0009 S32: 0.1114 S33: -0.0034 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ETHYLENE GLYCOL (EDO), GLYCEROL(GOL) AND REMARK 3 CHLORIDE (CL) MODELED ARE PRESENT PROTEIN/CRYSTALLIZATION/CRYO REMARK 3 BUFFER. 3. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR REMARK 3 RESTRAINT REPRESENTATION (-AUTONCS). 4. ATOM RECORD CONTAINS SUM REMARK 3 OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS REMARK 3 AND RESIDUAL U FACTORS. 5. THE CYSTEINE RESIDUE 291 WAS MONO- REMARK 3 OXIDIZED BASED ON THE ELECTRON DENSITY. CYSTEINE 203 WAS MODELED REMARK 3 AS S-ACETONYLCYSTEINE BASED ON DENSITY. 6. THIS CRYSTAL IS REMARK 3 IDENTICAL TO THAT OF PDB ENTRY 3PVQ. IT WAS OBTAINED IN A REMARK 3 DIFFERENT CRYSTALLIZATION CONDITION. REMARK 4 REMARK 4 4R0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : RHODIUM-COATED VERTICAL AND REMARK 200 HORIZONTAL FOCUSING MIRRORS; REMARK 200 LIQUID-NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JANUARY 10, 2014 REMARK 200 BUILT=20140307 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66413 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 45.767 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.00% GLYCEROL, 8.500% ISO-PROPANOL, REMARK 280 17.00% PEG-4000, 0.1M HEPES PH 7.5, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.28500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 22 REMARK 465 GLU A 23 REMARK 465 ILE A 24 REMARK 465 ARG A 25 REMARK 465 GLY B 0 REMARK 465 GLN B 22 REMARK 465 GLU B 23 REMARK 465 ILE B 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 256 CG OD1 OD2 REMARK 470 ASP B 256 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 31 29.74 -142.94 REMARK 500 SER A 31 27.86 -142.05 REMARK 500 LEU A 277 101.19 -160.80 REMARK 500 SER B 31 30.11 -141.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417194 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 22-328) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4R0K A 22 328 UNP Q8A860 Q8A860_BACTN 22 328 DBREF 4R0K B 22 328 UNP Q8A860 Q8A860_BACTN 22 328 SEQADV 4R0K GLY A 0 UNP Q8A860 EXPRESSION TAG SEQADV 4R0K GLY B 0 UNP Q8A860 EXPRESSION TAG SEQRES 1 A 308 GLY GLN GLU ILE ARG PRO MSE PRO ALA ASP SER ALA TYR SEQRES 2 A 308 GLY VAL VAL HIS ILE SER VAL CYS ASN MSE ARG ASP GLU SEQRES 3 A 308 GLY LYS PHE THR SER GLY MSE SER THR GLN ALA LEU LEU SEQRES 4 A 308 GLY MSE PRO VAL LYS VAL LEU GLN TYR THR GLY TRP TYR SEQRES 5 A 308 GLU ILE GLN THR PRO ASP ASP TYR THR GLY TRP VAL HIS SEQRES 6 A 308 ARG MSE VAL ILE THR PRO MSE SER LYS GLU LYS TYR ASP SEQRES 7 A 308 GLU TRP ASN ARG ALA GLU LYS ILE VAL VAL THR SER HIS SEQRES 8 A 308 TYR GLY PHE THR TYR GLU LYS PRO ASP ASP ASP SER GLN SEQRES 9 A 308 THR VAL SER ASP VAL VAL ALA GLY ASN ARG LEU LYS TRP SEQRES 10 A 308 GLU GLY SER LYS GLY HIS PHE TYR LYS VAL SER TYR PRO SEQRES 11 A 308 ASP GLY ARG GLN ALA TYR ILE SER ARG HIS ILE SER GLN SEQRES 12 A 308 PRO GLU SER LYS TRP ARG ALA SER LEU LYS GLN ASP ALA SEQRES 13 A 308 GLU SER ILE ILE LYS THR ALA TYR THR MSE ILE GLY ILE SEQRES 14 A 308 PRO TYR LEU TRP ALA GLY THR SER SER LYS GLY VAL ASP SEQRES 15 A 308 CSA SER GLY LEU VAL ARG THR VAL LEU PHE MSE HIS ASP SEQRES 16 A 308 ILE ILE ILE PRO ARG ASP ALA SER GLN GLN ALA TYR VAL SEQRES 17 A 308 GLY GLU ARG ILE GLU ILE ALA PRO ASP PHE SER ASN VAL SEQRES 18 A 308 GLN ARG GLY ASP LEU VAL PHE PHE GLY ARG LYS ALA THR SEQRES 19 A 308 ALA ASP ARG LYS GLU GLY ILE SER HIS VAL GLY ILE TYR SEQRES 20 A 308 LEU GLY ASN LYS ARG PHE ILE HIS ALA LEU GLY ASP VAL SEQRES 21 A 308 HIS ILE SER SER PHE ASP PRO GLU ASP GLU CSO TYR ASP SEQRES 22 A 308 GLU PHE ASN THR GLY ARG LEU LEU PHE ALA THR ARG PHE SEQRES 23 A 308 LEU PRO TYR ILE ASN LYS GLU LYS GLY MSE ASN THR THR SEQRES 24 A 308 ASP HIS ASN LEU TYR TYR LEU HIS HIS SEQRES 1 B 308 GLY GLN GLU ILE ARG PRO MSE PRO ALA ASP SER ALA TYR SEQRES 2 B 308 GLY VAL VAL HIS ILE SER VAL CYS ASN MSE ARG ASP GLU SEQRES 3 B 308 GLY LYS PHE THR SER GLY MSE SER THR GLN ALA LEU LEU SEQRES 4 B 308 GLY MSE PRO VAL LYS VAL LEU GLN TYR THR GLY TRP TYR SEQRES 5 B 308 GLU ILE GLN THR PRO ASP ASP TYR THR GLY TRP VAL HIS SEQRES 6 B 308 ARG MSE VAL ILE THR PRO MSE SER LYS GLU LYS TYR ASP SEQRES 7 B 308 GLU TRP ASN ARG ALA GLU LYS ILE VAL VAL THR SER HIS SEQRES 8 B 308 TYR GLY PHE THR TYR GLU LYS PRO ASP ASP ASP SER GLN SEQRES 9 B 308 THR VAL SER ASP VAL VAL ALA GLY ASN ARG LEU LYS TRP SEQRES 10 B 308 GLU GLY SER LYS GLY HIS PHE TYR LYS VAL SER TYR PRO SEQRES 11 B 308 ASP GLY ARG GLN ALA TYR ILE SER ARG HIS ILE SER GLN SEQRES 12 B 308 PRO GLU SER LYS TRP ARG ALA SER LEU LYS GLN ASP ALA SEQRES 13 B 308 GLU SER ILE ILE LYS THR ALA TYR THR MSE ILE GLY ILE SEQRES 14 B 308 PRO TYR LEU TRP ALA GLY THR SER SER LYS GLY VAL ASP SEQRES 15 B 308 CSA SER GLY LEU VAL ARG THR VAL LEU PHE MSE HIS ASP SEQRES 16 B 308 ILE ILE ILE PRO ARG ASP ALA SER GLN GLN ALA TYR VAL SEQRES 17 B 308 GLY GLU ARG ILE GLU ILE ALA PRO ASP PHE SER ASN VAL SEQRES 18 B 308 GLN ARG GLY ASP LEU VAL PHE PHE GLY ARG LYS ALA THR SEQRES 19 B 308 ALA ASP ARG LYS GLU GLY ILE SER HIS VAL GLY ILE TYR SEQRES 20 B 308 LEU GLY ASN LYS ARG PHE ILE HIS ALA LEU GLY ASP VAL SEQRES 21 B 308 HIS ILE SER SER PHE ASP PRO GLU ASP GLU CSO TYR ASP SEQRES 22 B 308 GLU PHE ASN THR GLY ARG LEU LEU PHE ALA THR ARG PHE SEQRES 23 B 308 LEU PRO TYR ILE ASN LYS GLU LYS GLY MSE ASN THR THR SEQRES 24 B 308 ASP HIS ASN LEU TYR TYR LEU HIS HIS MODRES 4R0K MSE A 27 MET SELENOMETHIONINE MODRES 4R0K MSE A 43 MET SELENOMETHIONINE MODRES 4R0K MSE A 53 MET SELENOMETHIONINE MODRES 4R0K MSE A 61 MET SELENOMETHIONINE MODRES 4R0K MSE A 87 MET SELENOMETHIONINE MODRES 4R0K MSE A 92 MET SELENOMETHIONINE MODRES 4R0K MSE A 186 MET SELENOMETHIONINE MODRES 4R0K CSA A 203 CYS S-ACETONYLCYSTEINE MODRES 4R0K MSE A 213 MET SELENOMETHIONINE MODRES 4R0K CSO A 291 CYS S-HYDROXYCYSTEINE MODRES 4R0K MSE A 316 MET SELENOMETHIONINE MODRES 4R0K MSE B 27 MET SELENOMETHIONINE MODRES 4R0K MSE B 43 MET SELENOMETHIONINE MODRES 4R0K MSE B 53 MET SELENOMETHIONINE MODRES 4R0K MSE B 61 MET SELENOMETHIONINE MODRES 4R0K MSE B 87 MET SELENOMETHIONINE MODRES 4R0K MSE B 92 MET SELENOMETHIONINE MODRES 4R0K MSE B 186 MET SELENOMETHIONINE MODRES 4R0K CSA B 203 CYS S-ACETONYLCYSTEINE MODRES 4R0K MSE B 213 MET SELENOMETHIONINE MODRES 4R0K CSO B 291 CYS S-HYDROXYCYSTEINE MODRES 4R0K MSE B 316 MET SELENOMETHIONINE HET MSE A 27 8 HET MSE A 43 8 HET MSE A 53 8 HET MSE A 61 8 HET MSE A 87 8 HET MSE A 92 8 HET MSE A 186 8 HET CSA A 203 10 HET MSE A 213 8 HET CSO A 291 7 HET MSE A 316 8 HET MSE B 27 8 HET MSE B 43 8 HET MSE B 53 8 HET MSE B 61 8 HET MSE B 87 8 HET MSE B 92 8 HET MSE B 186 8 HET CSA B 203 17 HET MSE B 213 8 HET CSO B 291 7 HET MSE B 316 8 HET CL A 401 1 HET CL A 402 1 HET GOL A 403 6 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET CL B 401 1 HET CL B 402 1 HET GOL B 403 6 HET EDO B 404 4 HET EDO B 405 4 HETNAM MSE SELENOMETHIONINE HETNAM CSA S-ACETONYLCYSTEINE HETNAM CSO S-HYDROXYCYSTEINE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 1 CSA 2(C6 H11 N O3 S) FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 CL 4(CL 1-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 EDO 5(C2 H6 O2) FORMUL 14 HOH *568(H2 O) HELIX 1 1 PRO A 28 SER A 31 5 4 HELIX 2 2 SER A 93 ALA A 103 1 11 HELIX 3 3 GLU A 165 LEU A 172 1 8 HELIX 4 4 ASP A 175 THR A 185 1 11 HELIX 5 5 ASP A 202 MSE A 213 1 12 HELIX 6 6 ASP A 221 ALA A 226 1 6 HELIX 7 7 ASP A 293 ARG A 299 1 7 HELIX 8 8 PHE A 306 ILE A 310 5 5 HELIX 9 9 ASP A 320 LEU A 326 5 7 HELIX 10 10 PRO B 28 SER B 31 5 4 HELIX 11 11 SER B 93 ALA B 103 1 11 HELIX 12 12 GLU B 165 LEU B 172 1 8 HELIX 13 13 ASP B 175 THR B 185 1 11 HELIX 14 14 ASP B 202 MSE B 213 1 12 HELIX 15 15 ASP B 221 ALA B 226 1 6 HELIX 16 16 ASP B 293 ARG B 299 1 7 HELIX 17 17 PHE B 306 ILE B 310 5 5 HELIX 18 18 ASP B 320 LEU B 326 5 7 SHEET 1 A 5 THR A 81 HIS A 85 0 SHEET 2 A 5 TRP A 71 GLN A 75 -1 N ILE A 74 O GLY A 82 SHEET 3 A 5 PRO A 62 TYR A 68 -1 N LEU A 66 O GLU A 73 SHEET 4 A 5 TYR A 33 VAL A 36 -1 N GLY A 34 O VAL A 63 SHEET 5 A 5 ILE A 89 MSE A 92 -1 O THR A 90 N VAL A 35 SHEET 1 B 2 VAL A 40 ARG A 44 0 SHEET 2 B 2 MSE A 53 LEU A 58 -1 O SER A 54 N MSE A 43 SHEET 1 C 5 GLN A 154 SER A 158 0 SHEET 2 C 5 PHE A 144 SER A 148 -1 N TYR A 145 O ILE A 157 SHEET 3 C 5 ARG A 134 LYS A 141 -1 N GLU A 138 O LYS A 146 SHEET 4 C 5 LYS A 105 VAL A 108 -1 N ILE A 106 O LEU A 135 SHEET 5 C 5 SER A 162 PRO A 164 -1 O GLN A 163 N VAL A 107 SHEET 1 D 2 TYR A 112 TYR A 116 0 SHEET 2 D 2 THR A 125 VAL A 130 -1 O VAL A 129 N GLY A 113 SHEET 1 E 2 THR A 196 SER A 197 0 SHEET 2 E 2 GLY A 200 VAL A 201 -1 O GLY A 200 N SER A 197 SHEET 1 F 2 ILE A 216 ILE A 217 0 SHEET 2 F 2 ASN A 317 THR A 318 -1 O ASN A 317 N ILE A 217 SHEET 1 G 6 GLU A 230 ILE A 232 0 SHEET 2 G 6 LEU A 300 ARG A 305 -1 O ALA A 303 N ILE A 232 SHEET 3 G 6 LEU A 246 ARG A 251 -1 N PHE A 248 O LEU A 301 SHEET 4 G 6 GLY A 260 GLY A 269 -1 O SER A 262 N PHE A 249 SHEET 5 G 6 ARG A 272 ALA A 276 -1 O ARG A 272 N LEU A 268 SHEET 6 G 6 VAL A 280 SER A 284 -1 O SER A 283 N PHE A 273 SHEET 1 H 5 THR B 81 HIS B 85 0 SHEET 2 H 5 TRP B 71 GLN B 75 -1 N ILE B 74 O GLY B 82 SHEET 3 H 5 PRO B 62 TYR B 68 -1 N LEU B 66 O GLU B 73 SHEET 4 H 5 TYR B 33 VAL B 36 -1 N GLY B 34 O VAL B 63 SHEET 5 H 5 ILE B 89 MSE B 92 -1 O THR B 90 N VAL B 35 SHEET 1 I 2 VAL B 40 ARG B 44 0 SHEET 2 I 2 MSE B 53 LEU B 58 -1 O SER B 54 N MSE B 43 SHEET 1 J 5 GLN B 154 SER B 158 0 SHEET 2 J 5 PHE B 144 SER B 148 -1 N VAL B 147 O ALA B 155 SHEET 3 J 5 ARG B 134 LYS B 141 -1 N GLU B 138 O LYS B 146 SHEET 4 J 5 LYS B 105 VAL B 108 -1 N ILE B 106 O LEU B 135 SHEET 5 J 5 SER B 162 PRO B 164 -1 O GLN B 163 N VAL B 107 SHEET 1 K 2 TYR B 112 TYR B 116 0 SHEET 2 K 2 THR B 125 VAL B 130 -1 O VAL B 129 N GLY B 113 SHEET 1 L 2 THR B 196 SER B 197 0 SHEET 2 L 2 GLY B 200 VAL B 201 -1 O GLY B 200 N SER B 197 SHEET 1 M 2 ILE B 216 ILE B 217 0 SHEET 2 M 2 ASN B 317 THR B 318 -1 O ASN B 317 N ILE B 217 SHEET 1 N 6 GLU B 230 ILE B 232 0 SHEET 2 N 6 LEU B 300 ARG B 305 -1 O ALA B 303 N ILE B 232 SHEET 3 N 6 LEU B 246 ARG B 251 -1 N PHE B 248 O LEU B 301 SHEET 4 N 6 GLY B 260 GLY B 269 -1 O SER B 262 N PHE B 249 SHEET 5 N 6 ARG B 272 ALA B 276 -1 O ARG B 272 N LEU B 268 SHEET 6 N 6 VAL B 280 SER B 284 -1 O SER B 283 N PHE B 273 LINK C PRO A 26 N MSE A 27 1555 1555 1.36 LINK C MSE A 27 N PRO A 28 1555 1555 1.37 LINK C ASN A 42 N MSE A 43 1555 1555 1.35 LINK C MSE A 43 N ARG A 44 1555 1555 1.35 LINK C GLY A 52 N MSE A 53 1555 1555 1.34 LINK C MSE A 53 N SER A 54 1555 1555 1.34 LINK C GLY A 60 N MSE A 61 1555 1555 1.35 LINK C MSE A 61 N PRO A 62 1555 1555 1.36 LINK C ARG A 86 N MSE A 87 1555 1555 1.34 LINK C MSE A 87 N VAL A 88 1555 1555 1.36 LINK C PRO A 91 N MSE A 92 1555 1555 1.34 LINK C MSE A 92 N SER A 93 1555 1555 1.35 LINK C THR A 185 N MSE A 186 1555 1555 1.34 LINK C MSE A 186 N ILE A 187 1555 1555 1.33 LINK C ASP A 202 N CSA A 203 1555 1555 1.34 LINK C CSA A 203 N SER A 204 1555 1555 1.32 LINK C PHE A 212 N MSE A 213 1555 1555 1.35 LINK C MSE A 213 N HIS A 214 1555 1555 1.34 LINK C GLU A 290 N CSO A 291 1555 1555 1.35 LINK C CSO A 291 N TYR A 292 1555 1555 1.34 LINK C GLY A 315 N MSE A 316 1555 1555 1.34 LINK C MSE A 316 N ASN A 317 1555 1555 1.35 LINK C PRO B 26 N MSE B 27 1555 1555 1.34 LINK C MSE B 27 N PRO B 28 1555 1555 1.36 LINK C ASN B 42 N MSE B 43 1555 1555 1.36 LINK C MSE B 43 N ARG B 44 1555 1555 1.36 LINK C GLY B 52 N MSE B 53 1555 1555 1.34 LINK C MSE B 53 N SER B 54 1555 1555 1.36 LINK C GLY B 60 N MSE B 61 1555 1555 1.35 LINK C MSE B 61 N PRO B 62 1555 1555 1.36 LINK C ARG B 86 N MSE B 87 1555 1555 1.33 LINK C MSE B 87 N VAL B 88 1555 1555 1.35 LINK C PRO B 91 N MSE B 92 1555 1555 1.33 LINK C MSE B 92 N SER B 93 1555 1555 1.33 LINK C THR B 185 N MSE B 186 1555 1555 1.35 LINK C MSE B 186 N ILE B 187 1555 1555 1.35 LINK C ASP B 202 N CSA B 203 1555 1555 1.35 LINK C CSA B 203 N SER B 204 1555 1555 1.33 LINK C PHE B 212 N MSE B 213 1555 1555 1.36 LINK C MSE B 213 N HIS B 214 1555 1555 1.36 LINK C GLU B 290 N CSO B 291 1555 1555 1.35 LINK C CSO B 291 N TYR B 292 1555 1555 1.35 LINK C GLY B 315 N MSE B 316 1555 1555 1.34 LINK C MSE B 316 N ASN B 317 1555 1555 1.34 SITE 1 AC1 5 SER A 262 PHE A 295 ASN A 296 ARG A 299 SITE 2 AC1 5 HOH A 675 SITE 1 AC2 4 ASN A 42 ARG A 44 HOH A 541 TRP B 193 SITE 1 AC3 6 ASP A 79 LYS A 314 ASN A 322 LEU A 323 SITE 2 AC3 6 HOH A 522 HOH A 551 SITE 1 AC4 6 SER A 54 TYR A 80 ASP A 202 SER A 204 SITE 2 AC4 6 ARG A 220 HOH A 531 SITE 1 AC5 8 PHE A 114 THR A 125 HOH A 705 HOH A 709 SITE 2 AC5 8 HOH A 758 HIS B 111 THR B 185 HOH B 573 SITE 1 AC6 5 THR A 55 GLN A 56 THR A 76 ASP A 78 SITE 2 AC6 5 ARG A 208 SITE 1 AC7 5 SER B 262 PHE B 295 ASN B 296 ARG B 299 SITE 2 AC7 5 HOH B 638 SITE 1 AC8 4 TRP A 193 ASN B 42 ARG B 44 HOH B 600 SITE 1 AC9 6 ASP B 79 ASN B 317 ASN B 322 LEU B 323 SITE 2 AC9 6 HOH B 540 HOH B 604 SITE 1 BC1 7 SER B 54 TYR B 80 ASP B 202 SER B 204 SITE 2 BC1 7 ARG B 220 ASP B 221 HOH B 688 SITE 1 BC2 4 GLU B 165 ARG B 169 THR B 319 HOH B 614 CRYST1 65.030 50.570 107.870 90.00 93.69 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015378 0.000000 0.000992 0.00000 SCALE2 0.000000 0.019775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009290 0.00000