HEADER ISOMERASE 05-AUG-14 4R1F TITLE RE-REFINED HUMAN DNA TOPOISOMERASE IIA (ATPASE AND TRANSDUCER DOMAINS) TITLE 2 IN COMPLEX WITH ADP AND SO4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 2-ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 29-428; COMPND 5 SYNONYM: DNA TOPOISOMERASE II, ALPHA ISOZYME; COMPND 6 EC: 5.99.1.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TOP2, TOP2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSB23 KEYWDS HUMAN TOPOISOMERASE IIA, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.V.STANGER,T.SCHIRMER REVDAT 3 08-NOV-23 4R1F 1 REMARK LINK REVDAT 2 05-NOV-14 4R1F 1 REMARK REVDAT 1 24-SEP-14 4R1F 0 JRNL AUTH F.V.STANGER,C.DEHIO,T.SCHIRMER JRNL TITL STRUCTURE OF THE N-TERMINAL GYRASE B FRAGMENT IN COMPLEX JRNL TITL 2 WITH ADPPI REVEALS RIGID-BODY MOTION INDUCED BY ATP JRNL TITL 3 HYDROLYSIS JRNL REF PLOS ONE V. 9 07289 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25202966 JRNL DOI 10.1371/JOURNAL.PONE.0107289 REMARK 0 REMARK 0 THIS ENTRY 4R1F REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL REMARK 0 STRUCTURAL DATA (R1ZXNSF) DETERMINED BY AUTHORS OF THE PDB ENTRY REMARK 0 1ZXN: AUTHOR INITIALS, AUTHOR LAST NAME REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.WEI,A.J.RUTHENBURG,S.K.BECHIS,G.L.VERDINE REMARK 1 TITL NUCLEOTIDE-DEPENDENT DOMAIN MOVEMENT IN THE ATPASE DOMAIN OF REMARK 1 TITL 2 A HUMAN TYPE IIA DNA TOPOISOMERASE REMARK 1 REF J.BIOL.CHEM. V. 280 37041 2005 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 16100112 REMARK 1 DOI 10.1074/JBC.M506520200 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 61079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 4648 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3512 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 281 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 12093 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 133 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.733 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.236 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.968 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12484 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 12041 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16809 ; 1.467 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 27734 ; 1.223 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1488 ; 6.139 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 567 ;33.685 ;24.991 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2329 ;15.780 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;21.774 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1862 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13798 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2842 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5994 ; 4.865 ; 6.099 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5993 ; 4.865 ; 6.099 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7468 ; 6.872 ; 9.145 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 29 422 B 29 422 21638 0.120 0.050 REMARK 3 2 A 29 422 C 29 422 21459 0.120 0.050 REMARK 3 3 A 29 422 D 29 422 21141 0.120 0.050 REMARK 3 4 B 29 424 C 29 424 22580 0.110 0.050 REMARK 3 5 B 29 424 D 29 424 21827 0.120 0.050 REMARK 3 6 C 29 425 D 29 425 21804 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4R1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1ZXN REMARK 200 REMARK 200 REMARK: AUTHORS USED SF DATA FROM THE ENTRY 1ZXN. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.24600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 277 REMARK 465 LYS A 278 REMARK 465 LEU A 279 REMARK 465 ASP A 280 REMARK 465 GLU A 281 REMARK 465 THR A 282 REMARK 465 GLY A 283 REMARK 465 ASN A 284 REMARK 465 SER A 285 REMARK 465 LEU A 286 REMARK 465 LYS A 287 REMARK 465 ASP A 339 REMARK 465 VAL A 340 REMARK 465 VAL A 341 REMARK 465 LYS A 342 REMARK 465 LYS A 343 REMARK 465 LYS A 344 REMARK 465 ASN A 345 REMARK 465 LYS A 346 REMARK 465 GLY A 347 REMARK 465 GLY A 348 REMARK 465 VAL A 349 REMARK 465 ALA A 350 REMARK 465 VAL A 351 REMARK 465 LYS A 352 REMARK 465 ALA A 353 REMARK 465 CYS A 405 REMARK 465 GLY A 406 REMARK 465 LEU A 423 REMARK 465 ASN A 424 REMARK 465 LYS A 425 REMARK 465 LYS A 426 REMARK 465 CYS A 427 REMARK 465 SER A 428 REMARK 465 ASP B 277 REMARK 465 LYS B 278 REMARK 465 LEU B 279 REMARK 465 ASP B 280 REMARK 465 GLU B 281 REMARK 465 THR B 282 REMARK 465 GLY B 283 REMARK 465 ASN B 284 REMARK 465 SER B 285 REMARK 465 LEU B 286 REMARK 465 ASN B 345 REMARK 465 LYS B 346 REMARK 465 GLY B 347 REMARK 465 GLY B 348 REMARK 465 VAL B 349 REMARK 465 ALA B 350 REMARK 465 VAL B 351 REMARK 465 LYS B 425 REMARK 465 LYS B 426 REMARK 465 CYS B 427 REMARK 465 SER B 428 REMARK 465 ASP C 154 REMARK 465 GLU C 155 REMARK 465 LYS C 156 REMARK 465 LYS C 276 REMARK 465 ASP C 277 REMARK 465 LYS C 278 REMARK 465 LEU C 279 REMARK 465 ASP C 280 REMARK 465 GLU C 281 REMARK 465 THR C 282 REMARK 465 GLY C 283 REMARK 465 ASN C 284 REMARK 465 SER C 285 REMARK 465 LEU C 286 REMARK 465 CYS C 427 REMARK 465 SER C 428 REMARK 465 ASP D 277 REMARK 465 LYS D 278 REMARK 465 LEU D 279 REMARK 465 ASP D 280 REMARK 465 GLU D 281 REMARK 465 THR D 282 REMARK 465 GLY D 283 REMARK 465 ASN D 284 REMARK 465 SER D 285 REMARK 465 LEU D 286 REMARK 465 LYS D 343 REMARK 465 LYS D 344 REMARK 465 ASN D 345 REMARK 465 LYS D 346 REMARK 465 GLY D 347 REMARK 465 GLY D 348 REMARK 465 VAL D 349 REMARK 465 ALA D 350 REMARK 465 VAL D 351 REMARK 465 GLU D 409 REMARK 465 SER D 410 REMARK 465 ILE D 411 REMARK 465 LEU D 412 REMARK 465 ASN D 413 REMARK 465 LYS D 426 REMARK 465 CYS D 427 REMARK 465 SER D 428 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE C 172 CG1 - CB - CG2 ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 -38.63 82.01 REMARK 500 ASN A 121 -159.89 -103.55 REMARK 500 LYS A 156 71.73 49.89 REMARK 500 ARG A 162 -38.90 -156.58 REMARK 500 PRO A 263 39.51 -81.98 REMARK 500 SER A 410 -3.70 -49.58 REMARK 500 LYS A 416 8.19 -50.02 REMARK 500 PHE A 417 36.24 -63.77 REMARK 500 ASP B 67 -36.56 80.21 REMARK 500 ASN B 121 -161.07 -102.21 REMARK 500 LYS B 156 74.48 51.66 REMARK 500 ARG B 162 -30.14 -158.34 REMARK 500 ASN B 210 21.19 -141.26 REMARK 500 ASN B 258 -79.02 63.16 REMARK 500 PRO B 263 38.89 -76.44 REMARK 500 ALA B 353 -77.09 175.35 REMARK 500 THR B 377 -43.12 75.36 REMARK 500 CYS B 405 -13.84 70.13 REMARK 500 ILE B 407 -60.56 -168.55 REMARK 500 ASP C 67 -35.57 78.74 REMARK 500 ASN C 121 -158.77 -104.54 REMARK 500 ARG C 162 -33.03 -156.95 REMARK 500 ASN C 210 20.61 -140.28 REMARK 500 ASN C 258 39.21 38.98 REMARK 500 PRO C 263 40.53 -79.82 REMARK 500 CYS C 405 24.44 -77.33 REMARK 500 ASP D 67 -37.45 80.22 REMARK 500 ASN D 121 -160.64 -103.91 REMARK 500 LYS D 156 73.94 50.62 REMARK 500 ARG D 162 -34.98 -157.15 REMARK 500 ASN D 210 -159.17 -131.07 REMARK 500 PRO D 263 40.08 -76.09 REMARK 500 LYS D 265 -94.75 -83.40 REMARK 500 LEU D 275 63.56 -119.27 REMARK 500 VAL D 341 38.09 -78.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 409 SER A 410 148.97 REMARK 500 LYS A 416 PHE A 417 144.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 91 OD1 REMARK 620 2 ADP A 502 O1A 84.6 REMARK 620 3 ADP A 502 O3B 93.5 76.2 REMARK 620 4 HOH A 601 O 79.6 156.5 87.6 REMARK 620 5 HOH A 633 O 98.5 102.4 167.8 97.0 REMARK 620 6 HOH A 635 O 176.6 95.8 83.3 99.0 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 91 OD1 REMARK 620 2 ADP B 503 O1A 87.9 REMARK 620 3 ADP B 503 O1B 97.3 79.5 REMARK 620 4 HOH B 644 O 96.0 96.1 165.7 REMARK 620 5 HOH B 645 O 177.3 94.4 81.7 85.1 REMARK 620 6 HOH B 646 O 84.7 167.4 91.3 94.9 92.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 91 OD1 REMARK 620 2 ADP C 502 O1B 93.4 REMARK 620 3 ADP C 502 O1A 87.6 77.1 REMARK 620 4 HOH C 602 O 84.7 92.7 166.8 REMARK 620 5 HOH C 607 O 175.4 82.0 91.5 95.4 REMARK 620 6 HOH C 638 O 91.2 164.1 88.0 102.8 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 91 OD1 REMARK 620 2 ADP D 503 O3B 93.7 REMARK 620 3 ADP D 503 O1A 84.4 64.9 REMARK 620 4 HOH D 609 O 97.6 111.0 175.7 REMARK 620 5 HOH D 610 O 92.7 145.1 81.7 102.0 REMARK 620 6 HOH D 611 O 167.3 85.4 83.7 94.6 81.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP D 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZXN RELATED DB: PDB REMARK 900 HUMAN DNA TOPOISOMERASE IIA ATPASE/ADP, THIS ENTRY 4R1F REFLECTS AN REMARK 900 ALTERNATIVE MODELING OF X-RAY DATA R1ZXNSF. REMARK 900 RELATED ID: 1ZXM RELATED DB: PDB REMARK 900 RELATED ID: 4PRX RELATED DB: PDB REMARK 900 RELATED ID: 1EI1 RELATED DB: PDB REMARK 900 RELATED ID: 4PU9 RELATED DB: PDB REMARK 900 RELATED ID: 4PRV RELATED DB: PDB DBREF 4R1F A 29 428 UNP P11388 TOP2A_HUMAN 29 428 DBREF 4R1F B 29 428 UNP P11388 TOP2A_HUMAN 29 428 DBREF 4R1F C 29 428 UNP P11388 TOP2A_HUMAN 29 428 DBREF 4R1F D 29 428 UNP P11388 TOP2A_HUMAN 29 428 SEQRES 1 A 400 SER VAL GLU ARG ILE TYR GLN LYS LYS THR GLN LEU GLU SEQRES 2 A 400 HIS ILE LEU LEU ARG PRO ASP THR TYR ILE GLY SER VAL SEQRES 3 A 400 GLU LEU VAL THR GLN GLN MET TRP VAL TYR ASP GLU ASP SEQRES 4 A 400 VAL GLY ILE ASN TYR ARG GLU VAL THR PHE VAL PRO GLY SEQRES 5 A 400 LEU TYR LYS ILE PHE ASP GLU ILE LEU VAL ASN ALA ALA SEQRES 6 A 400 ASP ASN LYS GLN ARG ASP PRO LYS MET SER CYS ILE ARG SEQRES 7 A 400 VAL THR ILE ASP PRO GLU ASN ASN LEU ILE SER ILE TRP SEQRES 8 A 400 ASN ASN GLY LYS GLY ILE PRO VAL VAL GLU HIS LYS VAL SEQRES 9 A 400 GLU LYS MET TYR VAL PRO ALA LEU ILE PHE GLY GLN LEU SEQRES 10 A 400 LEU THR SER SER ASN TYR ASP ASP ASP GLU LYS LYS VAL SEQRES 11 A 400 THR GLY GLY ARG ASN GLY TYR GLY ALA LYS LEU CYS ASN SEQRES 12 A 400 ILE PHE SER THR LYS PHE THR VAL GLU THR ALA SER ARG SEQRES 13 A 400 GLU TYR LYS LYS MET PHE LYS GLN THR TRP MET ASP ASN SEQRES 14 A 400 MET GLY ARG ALA GLY GLU MET GLU LEU LYS PRO PHE ASN SEQRES 15 A 400 GLY GLU ASP TYR THR CYS ILE THR PHE GLN PRO ASP LEU SEQRES 16 A 400 SER LYS PHE LYS MET GLN SER LEU ASP LYS ASP ILE VAL SEQRES 17 A 400 ALA LEU MET VAL ARG ARG ALA TYR ASP ILE ALA GLY SER SEQRES 18 A 400 THR LYS ASP VAL LYS VAL PHE LEU ASN GLY ASN LYS LEU SEQRES 19 A 400 PRO VAL LYS GLY PHE ARG SER TYR VAL ASP MET TYR LEU SEQRES 20 A 400 LYS ASP LYS LEU ASP GLU THR GLY ASN SER LEU LYS VAL SEQRES 21 A 400 ILE HIS GLU GLN VAL ASN HIS ARG TRP GLU VAL CYS LEU SEQRES 22 A 400 THR MET SER GLU LYS GLY PHE GLN GLN ILE SER PHE VAL SEQRES 23 A 400 ASN SER ILE ALA THR SER LYS GLY GLY ARG HIS VAL ASP SEQRES 24 A 400 TYR VAL ALA ASP GLN ILE VAL THR LYS LEU VAL ASP VAL SEQRES 25 A 400 VAL LYS LYS LYS ASN LYS GLY GLY VAL ALA VAL LYS ALA SEQRES 26 A 400 HIS GLN VAL LYS ASN HIS MET TRP ILE PHE VAL ASN ALA SEQRES 27 A 400 LEU ILE GLU ASN PRO THR PHE ASP SER GLN THR LYS GLU SEQRES 28 A 400 ASN MET THR LEU GLN PRO LYS SER PHE GLY SER THR CYS SEQRES 29 A 400 GLN LEU SER GLU LYS PHE ILE LYS ALA ALA ILE GLY CYS SEQRES 30 A 400 GLY ILE VAL GLU SER ILE LEU ASN TRP VAL LYS PHE LYS SEQRES 31 A 400 ALA GLN VAL GLN LEU ASN LYS LYS CYS SER SEQRES 1 B 400 SER VAL GLU ARG ILE TYR GLN LYS LYS THR GLN LEU GLU SEQRES 2 B 400 HIS ILE LEU LEU ARG PRO ASP THR TYR ILE GLY SER VAL SEQRES 3 B 400 GLU LEU VAL THR GLN GLN MET TRP VAL TYR ASP GLU ASP SEQRES 4 B 400 VAL GLY ILE ASN TYR ARG GLU VAL THR PHE VAL PRO GLY SEQRES 5 B 400 LEU TYR LYS ILE PHE ASP GLU ILE LEU VAL ASN ALA ALA SEQRES 6 B 400 ASP ASN LYS GLN ARG ASP PRO LYS MET SER CYS ILE ARG SEQRES 7 B 400 VAL THR ILE ASP PRO GLU ASN ASN LEU ILE SER ILE TRP SEQRES 8 B 400 ASN ASN GLY LYS GLY ILE PRO VAL VAL GLU HIS LYS VAL SEQRES 9 B 400 GLU LYS MET TYR VAL PRO ALA LEU ILE PHE GLY GLN LEU SEQRES 10 B 400 LEU THR SER SER ASN TYR ASP ASP ASP GLU LYS LYS VAL SEQRES 11 B 400 THR GLY GLY ARG ASN GLY TYR GLY ALA LYS LEU CYS ASN SEQRES 12 B 400 ILE PHE SER THR LYS PHE THR VAL GLU THR ALA SER ARG SEQRES 13 B 400 GLU TYR LYS LYS MET PHE LYS GLN THR TRP MET ASP ASN SEQRES 14 B 400 MET GLY ARG ALA GLY GLU MET GLU LEU LYS PRO PHE ASN SEQRES 15 B 400 GLY GLU ASP TYR THR CYS ILE THR PHE GLN PRO ASP LEU SEQRES 16 B 400 SER LYS PHE LYS MET GLN SER LEU ASP LYS ASP ILE VAL SEQRES 17 B 400 ALA LEU MET VAL ARG ARG ALA TYR ASP ILE ALA GLY SER SEQRES 18 B 400 THR LYS ASP VAL LYS VAL PHE LEU ASN GLY ASN LYS LEU SEQRES 19 B 400 PRO VAL LYS GLY PHE ARG SER TYR VAL ASP MET TYR LEU SEQRES 20 B 400 LYS ASP LYS LEU ASP GLU THR GLY ASN SER LEU LYS VAL SEQRES 21 B 400 ILE HIS GLU GLN VAL ASN HIS ARG TRP GLU VAL CYS LEU SEQRES 22 B 400 THR MET SER GLU LYS GLY PHE GLN GLN ILE SER PHE VAL SEQRES 23 B 400 ASN SER ILE ALA THR SER LYS GLY GLY ARG HIS VAL ASP SEQRES 24 B 400 TYR VAL ALA ASP GLN ILE VAL THR LYS LEU VAL ASP VAL SEQRES 25 B 400 VAL LYS LYS LYS ASN LYS GLY GLY VAL ALA VAL LYS ALA SEQRES 26 B 400 HIS GLN VAL LYS ASN HIS MET TRP ILE PHE VAL ASN ALA SEQRES 27 B 400 LEU ILE GLU ASN PRO THR PHE ASP SER GLN THR LYS GLU SEQRES 28 B 400 ASN MET THR LEU GLN PRO LYS SER PHE GLY SER THR CYS SEQRES 29 B 400 GLN LEU SER GLU LYS PHE ILE LYS ALA ALA ILE GLY CYS SEQRES 30 B 400 GLY ILE VAL GLU SER ILE LEU ASN TRP VAL LYS PHE LYS SEQRES 31 B 400 ALA GLN VAL GLN LEU ASN LYS LYS CYS SER SEQRES 1 C 400 SER VAL GLU ARG ILE TYR GLN LYS LYS THR GLN LEU GLU SEQRES 2 C 400 HIS ILE LEU LEU ARG PRO ASP THR TYR ILE GLY SER VAL SEQRES 3 C 400 GLU LEU VAL THR GLN GLN MET TRP VAL TYR ASP GLU ASP SEQRES 4 C 400 VAL GLY ILE ASN TYR ARG GLU VAL THR PHE VAL PRO GLY SEQRES 5 C 400 LEU TYR LYS ILE PHE ASP GLU ILE LEU VAL ASN ALA ALA SEQRES 6 C 400 ASP ASN LYS GLN ARG ASP PRO LYS MET SER CYS ILE ARG SEQRES 7 C 400 VAL THR ILE ASP PRO GLU ASN ASN LEU ILE SER ILE TRP SEQRES 8 C 400 ASN ASN GLY LYS GLY ILE PRO VAL VAL GLU HIS LYS VAL SEQRES 9 C 400 GLU LYS MET TYR VAL PRO ALA LEU ILE PHE GLY GLN LEU SEQRES 10 C 400 LEU THR SER SER ASN TYR ASP ASP ASP GLU LYS LYS VAL SEQRES 11 C 400 THR GLY GLY ARG ASN GLY TYR GLY ALA LYS LEU CYS ASN SEQRES 12 C 400 ILE PHE SER THR LYS PHE THR VAL GLU THR ALA SER ARG SEQRES 13 C 400 GLU TYR LYS LYS MET PHE LYS GLN THR TRP MET ASP ASN SEQRES 14 C 400 MET GLY ARG ALA GLY GLU MET GLU LEU LYS PRO PHE ASN SEQRES 15 C 400 GLY GLU ASP TYR THR CYS ILE THR PHE GLN PRO ASP LEU SEQRES 16 C 400 SER LYS PHE LYS MET GLN SER LEU ASP LYS ASP ILE VAL SEQRES 17 C 400 ALA LEU MET VAL ARG ARG ALA TYR ASP ILE ALA GLY SER SEQRES 18 C 400 THR LYS ASP VAL LYS VAL PHE LEU ASN GLY ASN LYS LEU SEQRES 19 C 400 PRO VAL LYS GLY PHE ARG SER TYR VAL ASP MET TYR LEU SEQRES 20 C 400 LYS ASP LYS LEU ASP GLU THR GLY ASN SER LEU LYS VAL SEQRES 21 C 400 ILE HIS GLU GLN VAL ASN HIS ARG TRP GLU VAL CYS LEU SEQRES 22 C 400 THR MET SER GLU LYS GLY PHE GLN GLN ILE SER PHE VAL SEQRES 23 C 400 ASN SER ILE ALA THR SER LYS GLY GLY ARG HIS VAL ASP SEQRES 24 C 400 TYR VAL ALA ASP GLN ILE VAL THR LYS LEU VAL ASP VAL SEQRES 25 C 400 VAL LYS LYS LYS ASN LYS GLY GLY VAL ALA VAL LYS ALA SEQRES 26 C 400 HIS GLN VAL LYS ASN HIS MET TRP ILE PHE VAL ASN ALA SEQRES 27 C 400 LEU ILE GLU ASN PRO THR PHE ASP SER GLN THR LYS GLU SEQRES 28 C 400 ASN MET THR LEU GLN PRO LYS SER PHE GLY SER THR CYS SEQRES 29 C 400 GLN LEU SER GLU LYS PHE ILE LYS ALA ALA ILE GLY CYS SEQRES 30 C 400 GLY ILE VAL GLU SER ILE LEU ASN TRP VAL LYS PHE LYS SEQRES 31 C 400 ALA GLN VAL GLN LEU ASN LYS LYS CYS SER SEQRES 1 D 400 SER VAL GLU ARG ILE TYR GLN LYS LYS THR GLN LEU GLU SEQRES 2 D 400 HIS ILE LEU LEU ARG PRO ASP THR TYR ILE GLY SER VAL SEQRES 3 D 400 GLU LEU VAL THR GLN GLN MET TRP VAL TYR ASP GLU ASP SEQRES 4 D 400 VAL GLY ILE ASN TYR ARG GLU VAL THR PHE VAL PRO GLY SEQRES 5 D 400 LEU TYR LYS ILE PHE ASP GLU ILE LEU VAL ASN ALA ALA SEQRES 6 D 400 ASP ASN LYS GLN ARG ASP PRO LYS MET SER CYS ILE ARG SEQRES 7 D 400 VAL THR ILE ASP PRO GLU ASN ASN LEU ILE SER ILE TRP SEQRES 8 D 400 ASN ASN GLY LYS GLY ILE PRO VAL VAL GLU HIS LYS VAL SEQRES 9 D 400 GLU LYS MET TYR VAL PRO ALA LEU ILE PHE GLY GLN LEU SEQRES 10 D 400 LEU THR SER SER ASN TYR ASP ASP ASP GLU LYS LYS VAL SEQRES 11 D 400 THR GLY GLY ARG ASN GLY TYR GLY ALA LYS LEU CYS ASN SEQRES 12 D 400 ILE PHE SER THR LYS PHE THR VAL GLU THR ALA SER ARG SEQRES 13 D 400 GLU TYR LYS LYS MET PHE LYS GLN THR TRP MET ASP ASN SEQRES 14 D 400 MET GLY ARG ALA GLY GLU MET GLU LEU LYS PRO PHE ASN SEQRES 15 D 400 GLY GLU ASP TYR THR CYS ILE THR PHE GLN PRO ASP LEU SEQRES 16 D 400 SER LYS PHE LYS MET GLN SER LEU ASP LYS ASP ILE VAL SEQRES 17 D 400 ALA LEU MET VAL ARG ARG ALA TYR ASP ILE ALA GLY SER SEQRES 18 D 400 THR LYS ASP VAL LYS VAL PHE LEU ASN GLY ASN LYS LEU SEQRES 19 D 400 PRO VAL LYS GLY PHE ARG SER TYR VAL ASP MET TYR LEU SEQRES 20 D 400 LYS ASP LYS LEU ASP GLU THR GLY ASN SER LEU LYS VAL SEQRES 21 D 400 ILE HIS GLU GLN VAL ASN HIS ARG TRP GLU VAL CYS LEU SEQRES 22 D 400 THR MET SER GLU LYS GLY PHE GLN GLN ILE SER PHE VAL SEQRES 23 D 400 ASN SER ILE ALA THR SER LYS GLY GLY ARG HIS VAL ASP SEQRES 24 D 400 TYR VAL ALA ASP GLN ILE VAL THR LYS LEU VAL ASP VAL SEQRES 25 D 400 VAL LYS LYS LYS ASN LYS GLY GLY VAL ALA VAL LYS ALA SEQRES 26 D 400 HIS GLN VAL LYS ASN HIS MET TRP ILE PHE VAL ASN ALA SEQRES 27 D 400 LEU ILE GLU ASN PRO THR PHE ASP SER GLN THR LYS GLU SEQRES 28 D 400 ASN MET THR LEU GLN PRO LYS SER PHE GLY SER THR CYS SEQRES 29 D 400 GLN LEU SER GLU LYS PHE ILE LYS ALA ALA ILE GLY CYS SEQRES 30 D 400 GLY ILE VAL GLU SER ILE LEU ASN TRP VAL LYS PHE LYS SEQRES 31 D 400 ALA GLN VAL GLN LEU ASN LYS LYS CYS SER HET MG A 501 1 HET ADP A 502 27 HET GOL A 503 6 HET MG B 501 1 HET SO4 B 502 5 HET ADP B 503 27 HET MG C 501 1 HET ADP C 502 27 HET SO4 C 503 5 HET MG D 501 1 HET SO4 D 502 5 HET ADP D 503 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 MG 4(MG 2+) FORMUL 6 ADP 4(C10 H15 N5 O10 P2) FORMUL 7 GOL C3 H8 O3 FORMUL 9 SO4 3(O4 S 2-) FORMUL 17 HOH *134(H2 O) HELIX 1 1 SER A 29 TYR A 34 1 6 HELIX 2 2 THR A 38 ARG A 46 1 9 HELIX 3 3 PRO A 47 GLY A 52 1 6 HELIX 4 4 VAL A 78 ASP A 99 1 22 HELIX 5 5 VAL A 137 GLN A 144 1 8 HELIX 6 6 ASP A 152 LYS A 156 5 5 HELIX 7 7 TYR A 165 PHE A 173 1 9 HELIX 8 8 LEU A 223 LYS A 227 5 5 HELIX 9 9 ASP A 232 THR A 250 1 19 HELIX 10 10 LYS A 265 LEU A 275 1 11 HELIX 11 11 ARG A 324 LEU A 337 1 14 HELIX 12 12 VAL A 356 ASN A 358 5 3 HELIX 13 13 GLN A 384 PHE A 388 5 5 HELIX 14 14 SER A 395 GLY A 404 1 10 HELIX 15 15 GLU A 409 LYS A 416 1 8 HELIX 16 16 VAL B 30 TYR B 34 1 5 HELIX 17 17 THR B 38 ARG B 46 1 9 HELIX 18 18 PRO B 47 GLY B 52 1 6 HELIX 19 19 VAL B 78 ASP B 99 1 22 HELIX 20 20 VAL B 137 GLN B 144 1 8 HELIX 21 21 ASP B 152 LYS B 156 5 5 HELIX 22 22 TYR B 165 PHE B 173 1 9 HELIX 23 23 ARG B 184 TYR B 186 5 3 HELIX 24 24 LEU B 223 LYS B 227 5 5 HELIX 25 25 ASP B 232 THR B 250 1 19 HELIX 26 26 LYS B 265 LEU B 275 1 11 HELIX 27 27 ARG B 324 LYS B 344 1 21 HELIX 28 28 ALA B 353 ASN B 358 1 6 HELIX 29 29 GLN B 384 PHE B 388 5 5 HELIX 30 30 SER B 395 GLY B 404 1 10 HELIX 31 31 ILE B 407 VAL B 421 1 15 HELIX 32 32 VAL C 30 TYR C 34 1 5 HELIX 33 33 THR C 38 ARG C 46 1 9 HELIX 34 34 PRO C 47 GLY C 52 1 6 HELIX 35 35 VAL C 78 ASP C 99 1 22 HELIX 36 36 VAL C 137 GLN C 144 1 8 HELIX 37 37 TYR C 165 PHE C 173 1 9 HELIX 38 38 ARG C 184 TYR C 186 5 3 HELIX 39 39 LEU C 223 LYS C 227 5 5 HELIX 40 40 ASP C 232 THR C 250 1 19 HELIX 41 41 LYS C 265 LEU C 275 1 11 HELIX 42 42 GLY C 323 ASN C 345 1 23 HELIX 43 43 LYS C 352 ASN C 358 1 7 HELIX 44 44 GLN C 384 PHE C 388 5 5 HELIX 45 45 SER C 395 CYS C 405 1 11 HELIX 46 46 GLY C 406 VAL C 421 1 16 HELIX 47 47 VAL D 30 TYR D 34 1 5 HELIX 48 48 THR D 38 ARG D 46 1 9 HELIX 49 49 PRO D 47 GLY D 52 1 6 HELIX 50 50 VAL D 78 ASP D 99 1 22 HELIX 51 51 VAL D 137 GLN D 144 1 8 HELIX 52 52 ASP D 152 LYS D 156 5 5 HELIX 53 53 TYR D 165 PHE D 173 1 9 HELIX 54 54 ARG D 184 TYR D 186 5 3 HELIX 55 55 LEU D 223 LYS D 227 5 5 HELIX 56 56 ASP D 232 THR D 250 1 19 HELIX 57 57 GLY D 266 LEU D 275 1 10 HELIX 58 58 GLY D 323 VAL D 341 1 19 HELIX 59 59 ALA D 353 ASN D 358 1 6 HELIX 60 60 GLN D 384 PHE D 388 5 5 HELIX 61 61 SER D 395 CYS D 405 1 11 HELIX 62 62 VAL D 415 GLN D 420 1 6 SHEET 1 A 2 GLN A 35 LYS A 36 0 SHEET 2 A 2 THR B 147 SER B 148 -1 O SER B 148 N GLN A 35 SHEET 1 B 2 VAL A 57 ASP A 65 0 SHEET 2 B 2 GLY A 69 PHE A 77 -1 O GLY A 69 N ASP A 65 SHEET 1 C 3 ARG A 200 ALA A 201 0 SHEET 2 C 3 LYS A 188 MET A 195 -1 N MET A 195 O ARG A 200 SHEET 3 C 3 GLU A 205 PRO A 208 -1 O GLU A 205 N LYS A 191 SHEET 1 D 8 ARG A 200 ALA A 201 0 SHEET 2 D 8 LYS A 188 MET A 195 -1 N MET A 195 O ARG A 200 SHEET 3 D 8 SER A 174 SER A 183 -1 N THR A 181 O PHE A 190 SHEET 4 D 8 TYR A 214 PRO A 221 -1 O THR A 218 N THR A 178 SHEET 5 D 8 LEU A 115 ASN A 121 -1 N ILE A 116 O PHE A 219 SHEET 6 D 8 CYS A 104 ASP A 110 -1 N ARG A 106 O TRP A 119 SHEET 7 D 8 LYS A 254 LEU A 257 1 O PHE A 256 N VAL A 107 SHEET 8 D 8 ASN A 260 LYS A 261 -1 O ASN A 260 N LEU A 257 SHEET 1 E 2 GLU A 129 HIS A 130 0 SHEET 2 E 2 MET A 135 TYR A 136 -1 O MET A 135 N HIS A 130 SHEET 1 F 2 THR A 147 SER A 148 0 SHEET 2 F 2 GLN B 35 LYS B 36 -1 O GLN B 35 N SER A 148 SHEET 1 G 5 ILE A 289 ASN A 294 0 SHEET 2 G 5 TRP A 297 MET A 303 -1 O LEU A 301 N ILE A 289 SHEET 3 G 5 MET A 360 ALA A 366 -1 O PHE A 363 N CYS A 300 SHEET 4 G 5 GLN A 309 VAL A 314 1 N GLN A 309 O ILE A 362 SHEET 5 G 5 ILE A 317 ALA A 318 -1 O ILE A 317 N VAL A 314 SHEET 1 H 2 GLY A 322 GLY A 323 0 SHEET 2 H 2 ASN A 380 MET A 381 1 O MET A 381 N GLY A 322 SHEET 1 I 2 ALA A 419 VAL A 421 0 SHEET 2 I 2 GLN B 422 ASN B 424 -1 O GLN B 422 N VAL A 421 SHEET 1 J 2 VAL B 57 ASP B 65 0 SHEET 2 J 2 GLY B 69 PHE B 77 -1 O GLY B 69 N ASP B 65 SHEET 1 K 3 ARG B 200 ALA B 201 0 SHEET 2 K 3 LYS B 188 MET B 195 -1 N MET B 195 O ARG B 200 SHEET 3 K 3 GLU B 205 PRO B 208 -1 O GLU B 205 N LYS B 191 SHEET 1 L 8 ARG B 200 ALA B 201 0 SHEET 2 L 8 LYS B 188 MET B 195 -1 N MET B 195 O ARG B 200 SHEET 3 L 8 SER B 174 SER B 183 -1 N THR B 181 O PHE B 190 SHEET 4 L 8 TYR B 214 PRO B 221 -1 O THR B 218 N THR B 178 SHEET 5 L 8 LEU B 115 ASN B 121 -1 N ILE B 116 O PHE B 219 SHEET 6 L 8 CYS B 104 ASP B 110 -1 N ARG B 106 O TRP B 119 SHEET 7 L 8 LYS B 254 LEU B 257 1 O PHE B 256 N VAL B 107 SHEET 8 L 8 ASN B 260 LYS B 261 -1 O ASN B 260 N LEU B 257 SHEET 1 M 2 GLU B 129 HIS B 130 0 SHEET 2 M 2 MET B 135 TYR B 136 -1 O MET B 135 N HIS B 130 SHEET 1 N 5 ILE B 289 ASN B 294 0 SHEET 2 N 5 TRP B 297 MET B 303 -1 O LEU B 301 N ILE B 289 SHEET 3 N 5 MET B 360 ALA B 366 -1 O PHE B 363 N CYS B 300 SHEET 4 N 5 GLN B 309 VAL B 314 1 N GLN B 309 O MET B 360 SHEET 5 N 5 ILE B 317 ALA B 318 -1 O ILE B 317 N VAL B 314 SHEET 1 O 2 GLY B 322 GLY B 323 0 SHEET 2 O 2 ASN B 380 MET B 381 1 O MET B 381 N GLY B 322 SHEET 1 P 2 GLN C 35 LYS C 36 0 SHEET 2 P 2 THR D 147 SER D 148 -1 O SER D 148 N GLN C 35 SHEET 1 Q 2 VAL C 57 ASP C 65 0 SHEET 2 Q 2 GLY C 69 PHE C 77 -1 O GLY C 69 N ASP C 65 SHEET 1 R 3 ARG C 200 ALA C 201 0 SHEET 2 R 3 LYS C 188 MET C 195 -1 N MET C 195 O ARG C 200 SHEET 3 R 3 GLU C 205 PRO C 208 -1 O GLU C 205 N LYS C 191 SHEET 1 S 8 ARG C 200 ALA C 201 0 SHEET 2 S 8 LYS C 188 MET C 195 -1 N MET C 195 O ARG C 200 SHEET 3 S 8 SER C 174 SER C 183 -1 N THR C 181 O PHE C 190 SHEET 4 S 8 TYR C 214 PRO C 221 -1 O THR C 218 N THR C 178 SHEET 5 S 8 LEU C 115 ASN C 121 -1 N ILE C 116 O PHE C 219 SHEET 6 S 8 CYS C 104 ASP C 110 -1 N ARG C 106 O TRP C 119 SHEET 7 S 8 LYS C 254 LEU C 257 1 O PHE C 256 N VAL C 107 SHEET 8 S 8 ASN C 260 LYS C 261 -1 O ASN C 260 N LEU C 257 SHEET 1 T 2 GLU C 129 HIS C 130 0 SHEET 2 T 2 MET C 135 TYR C 136 -1 O MET C 135 N HIS C 130 SHEET 1 U 2 THR C 147 SER C 148 0 SHEET 2 U 2 GLN D 35 LYS D 36 -1 O GLN D 35 N SER C 148 SHEET 1 V 5 ILE C 289 ASN C 294 0 SHEET 2 V 5 TRP C 297 MET C 303 -1 O LEU C 301 N ILE C 289 SHEET 3 V 5 MET C 360 ALA C 366 -1 O PHE C 363 N CYS C 300 SHEET 4 V 5 GLN C 309 VAL C 314 1 N GLN C 309 O ILE C 362 SHEET 5 V 5 ILE C 317 ALA C 318 -1 O ILE C 317 N VAL C 314 SHEET 1 W 2 GLN C 422 LYS C 425 0 SHEET 2 W 2 VAL D 421 ASN D 424 -1 O ASN D 424 N GLN C 422 SHEET 1 X 2 VAL D 57 ASP D 65 0 SHEET 2 X 2 GLY D 69 PHE D 77 -1 O GLY D 69 N ASP D 65 SHEET 1 Y 3 ARG D 200 ALA D 201 0 SHEET 2 Y 3 LYS D 188 MET D 195 -1 N MET D 195 O ARG D 200 SHEET 3 Y 3 GLU D 205 PRO D 208 -1 O GLU D 205 N LYS D 191 SHEET 1 Z 8 ARG D 200 ALA D 201 0 SHEET 2 Z 8 LYS D 188 MET D 195 -1 N MET D 195 O ARG D 200 SHEET 3 Z 8 SER D 174 SER D 183 -1 N THR D 181 O PHE D 190 SHEET 4 Z 8 TYR D 214 PRO D 221 -1 O THR D 218 N THR D 178 SHEET 5 Z 8 LEU D 115 ASN D 121 -1 N ILE D 116 O PHE D 219 SHEET 6 Z 8 CYS D 104 ASP D 110 -1 N ARG D 106 O TRP D 119 SHEET 7 Z 8 LYS D 254 LEU D 257 1 O PHE D 256 N VAL D 107 SHEET 8 Z 8 ASN D 260 LYS D 261 -1 O ASN D 260 N LEU D 257 SHEET 1 AA 2 GLU D 129 HIS D 130 0 SHEET 2 AA 2 MET D 135 TYR D 136 -1 O MET D 135 N HIS D 130 SHEET 1 AB 5 ILE D 289 ASN D 294 0 SHEET 2 AB 5 TRP D 297 MET D 303 -1 O LEU D 301 N ILE D 289 SHEET 3 AB 5 MET D 360 ALA D 366 -1 O PHE D 363 N CYS D 300 SHEET 4 AB 5 GLN D 309 VAL D 314 1 N GLN D 309 O MET D 360 SHEET 5 AB 5 ILE D 317 ALA D 318 -1 O ILE D 317 N VAL D 314 LINK OD1 ASN A 91 MG MG A 501 1555 1555 2.12 LINK MG MG A 501 O1A ADP A 502 1555 1555 2.12 LINK MG MG A 501 O3B ADP A 502 1555 1555 2.15 LINK MG MG A 501 O HOH A 601 1555 1555 2.14 LINK MG MG A 501 O HOH A 633 1555 1555 2.14 LINK MG MG A 501 O HOH A 635 1555 1555 2.15 LINK OD1 ASN B 91 MG MG B 501 1555 1555 2.13 LINK MG MG B 501 O1A ADP B 503 1555 1555 2.14 LINK MG MG B 501 O1B ADP B 503 1555 1555 2.15 LINK MG MG B 501 O HOH B 644 1555 1555 2.14 LINK MG MG B 501 O HOH B 645 1555 1555 2.12 LINK MG MG B 501 O HOH B 646 1555 1555 2.13 LINK OD1 ASN C 91 MG MG C 501 1555 1555 2.14 LINK MG MG C 501 O1B ADP C 502 1555 1555 2.15 LINK MG MG C 501 O1A ADP C 502 1555 1555 2.18 LINK MG MG C 501 O HOH C 602 1555 1555 2.20 LINK MG MG C 501 O HOH C 607 1555 1555 2.12 LINK MG MG C 501 O HOH C 638 1555 1555 2.14 LINK OD1 ASN D 91 MG MG D 501 1555 1555 2.16 LINK MG MG D 501 O3B ADP D 503 1555 1555 2.14 LINK MG MG D 501 O1A ADP D 503 1555 1555 2.15 LINK MG MG D 501 O HOH D 609 1555 1555 2.10 LINK MG MG D 501 O HOH D 610 1555 1555 2.13 LINK MG MG D 501 O HOH D 611 1555 1555 2.15 SITE 1 AC1 5 ASN A 91 ADP A 502 HOH A 601 HOH A 633 SITE 2 AC1 5 HOH A 635 SITE 1 AC2 22 ASN A 91 ASN A 95 ARG A 98 ASN A 120 SITE 2 AC2 22 ILE A 125 ILE A 141 PHE A 142 SER A 148 SITE 3 AC2 22 SER A 149 ASN A 150 GLY A 161 ARG A 162 SITE 4 AC2 22 ASN A 163 GLY A 164 TYR A 165 GLY A 166 SITE 5 AC2 22 ALA A 167 LYS A 168 MG A 501 HOH A 601 SITE 6 AC2 22 HOH A 635 TYR B 34 SITE 1 AC3 7 TYR A 50 LYS A 83 ASN A 163 TYR A 165 SITE 2 AC3 7 GLY A 166 LYS A 378 HOH A 635 SITE 1 AC4 5 ASN B 91 ADP B 503 HOH B 644 HOH B 645 SITE 2 AC4 5 HOH B 646 SITE 1 AC5 9 GLU B 87 ARG B 162 ASN B 163 GLY B 164 SITE 2 AC5 9 TYR B 165 GLY B 166 LYS B 378 ADP B 503 SITE 3 AC5 9 HOH B 645 SITE 1 AC6 25 TYR A 34 ASN B 91 ASN B 95 ASN B 120 SITE 2 AC6 25 ILE B 125 ILE B 141 PHE B 142 SER B 148 SITE 3 AC6 25 SER B 149 ASN B 150 GLY B 161 ARG B 162 SITE 4 AC6 25 ASN B 163 GLY B 164 TYR B 165 GLY B 166 SITE 5 AC6 25 ALA B 167 LYS B 168 MG B 501 SO4 B 502 SITE 6 AC6 25 HOH B 603 HOH B 606 HOH B 612 HOH B 645 SITE 7 AC6 25 HOH B 646 SITE 1 AC7 5 ASN C 91 ADP C 502 HOH C 602 HOH C 607 SITE 2 AC7 5 HOH C 638 SITE 1 AC8 24 ASN C 91 ASN C 95 ASN C 120 ILE C 125 SITE 2 AC8 24 ILE C 141 PHE C 142 SER C 148 SER C 149 SITE 3 AC8 24 ASN C 150 GLY C 161 ARG C 162 ASN C 163 SITE 4 AC8 24 GLY C 164 TYR C 165 GLY C 166 ALA C 167 SITE 5 AC8 24 LYS C 168 MG C 501 SO4 C 503 HOH C 603 SITE 6 AC8 24 HOH C 607 HOH C 610 HOH C 638 TYR D 34 SITE 1 AC9 7 GLU C 87 ASN C 163 TYR C 165 GLY C 166 SITE 2 AC9 7 LYS C 378 ADP C 502 HOH C 607 SITE 1 BC1 5 ASN D 91 ADP D 503 HOH D 609 HOH D 610 SITE 2 BC1 5 HOH D 611 SITE 1 BC2 9 GLU D 87 ARG D 162 ASN D 163 GLY D 164 SITE 2 BC2 9 TYR D 165 GLY D 166 LYS D 378 ADP D 503 SITE 3 BC2 9 HOH D 611 SITE 1 BC3 22 TYR C 34 ASN D 91 ASN D 95 ASN D 120 SITE 2 BC3 22 ILE D 125 ILE D 141 PHE D 142 SER D 148 SITE 3 BC3 22 SER D 149 ASN D 150 GLY D 161 ARG D 162 SITE 4 BC3 22 ASN D 163 GLY D 164 TYR D 165 GLY D 166 SITE 5 BC3 22 ALA D 167 LYS D 168 MG D 501 SO4 D 502 SITE 6 BC3 22 HOH D 610 HOH D 611 CRYST1 71.015 90.492 148.293 90.00 89.97 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014082 0.000000 -0.000007 0.00000 SCALE2 0.000000 0.011051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006743 0.00000