HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 06-AUG-14 4R1K TITLE CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN (EUBSIR_01394) FROM TITLE 2 EUBACTERIUM SIRAEUM DSM 15702 AT 2.56 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUBACTERIUM SIRAEUM; SOURCE 3 ORGANISM_TAXID: 428128; SOURCE 4 STRAIN: DSM 15702; SOURCE 5 GENE: EUBSIR_01394; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NTF2-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4R1K 1 SEQADV LINK REVDAT 4 24-JAN-18 4R1K 1 JRNL REVDAT 3 22-NOV-17 4R1K 1 REMARK REVDAT 2 24-DEC-14 4R1K 1 TITLE REVDAT 1 01-OCT-14 4R1K 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (EUBSIR_01394) JRNL TITL 2 FROM EUBACTERIUM SIRAEUM DSM 15702 AT 2.56 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 10762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 543 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 793 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.64000 REMARK 3 B22 (A**2) : -5.55000 REMARK 3 B33 (A**2) : 2.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.95000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.735 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.357 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.288 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.488 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2285 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1990 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3074 ; 1.483 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4610 ; 1.084 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 6.658 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;40.455 ;25.630 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 373 ;15.548 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;28.965 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 295 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2665 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 557 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1082 ; 1.664 ; 2.553 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1081 ; 1.656 ; 2.550 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1349 ; 2.654 ; 4.773 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 163 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0220 36.2870 51.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.4134 T22: 0.4871 REMARK 3 T33: 0.1779 T12: -0.0121 REMARK 3 T13: -0.1095 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.7026 L22: 1.3986 REMARK 3 L33: 0.9596 L12: 0.4183 REMARK 3 L13: -0.6859 L23: -0.4718 REMARK 3 S TENSOR REMARK 3 S11: -0.1395 S12: 0.1557 S13: -0.0083 REMARK 3 S21: -0.3459 S22: 0.1014 S23: 0.0618 REMARK 3 S31: 0.1719 S32: -0.0109 S33: 0.0382 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 164 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4900 47.4470 36.9940 REMARK 3 T TENSOR REMARK 3 T11: 0.2828 T22: 0.5735 REMARK 3 T33: 0.1392 T12: -0.0233 REMARK 3 T13: -0.1076 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 2.6383 L22: 2.3895 REMARK 3 L33: 2.4496 L12: -0.8736 REMARK 3 L13: -0.8392 L23: 0.0736 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: 0.1844 S13: -0.0302 REMARK 3 S21: -0.0891 S22: 0.0959 S23: 0.0161 REMARK 3 S31: 0.0022 S32: -0.0888 S33: -0.0510 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 4 REMARK 4 4R1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97939,0.91837,0.97882 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11309 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 42.844 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM ACETATE, 30.0% 2-METHYL REMARK 280 -2,4-PENTANEDIOL, 0.1M SODIUM CACODYLATE PH 6.5, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.82300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.65900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.82300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.65900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 164 REMARK 465 LYS A 165 REMARK 465 GLU A 166 REMARK 465 LYS B 165 REMARK 465 GLU B 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 144 CG - SE - CE ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 133 86.33 -154.98 REMARK 500 LYS B 48 60.45 60.27 REMARK 500 TRP B 133 87.66 -152.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-420689 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 30-166 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4R1K A 30 166 UNP B0MNI9 B0MNI9_9FIRM 30 166 DBREF 4R1K B 30 166 UNP B0MNI9 B0MNI9_9FIRM 30 166 SEQADV 4R1K GLY A 0 UNP B0MNI9 EXPRESSION TAG SEQADV 4R1K GLY B 0 UNP B0MNI9 EXPRESSION TAG SEQRES 1 A 138 GLY ASP GLU GLY ASN ILE LYS GLU ASN ALA VAL ARG MSE SEQRES 2 A 138 MSE GLU CYS ILE VAL ASN LYS ASP SER GLU LYS LEU PHE SEQRES 3 A 138 ASP PHE TYR ASN LYS ASP MSE LYS ASP ASN TYR LYS ASP SEQRES 4 A 138 SER SER LEU ASP GLU ILE ARG GLN LEU PHE GLU TYR ILE SEQRES 5 A 138 ASP GLY ALA ILE THR SER TYR ASN TYR GLU GLY LYS GLY SEQRES 6 A 138 GLY GLY GLN GLU ALA LYS ASN ASP GLY ILE ILE CYS TYR SEQRES 7 A 138 TYR SER CYS HIS PRO GLU PHE ASP PHE THR THR GLU THR SEQRES 8 A 138 GLY GLN GLU TYR THR ILE SER PHE SER TYR HIS TYR ILE SEQRES 9 A 138 TRP ASN GLU HIS PRO GLU TYR GLU GLY ILE ASN MSE ILE SEQRES 10 A 138 GLN ILE CYS LYS ASP GLY ASN TRP GLY GLU LYS LEU ILE SEQRES 11 A 138 ILE GLY ARG ASN TYR TYR LYS GLU SEQRES 1 B 138 GLY ASP GLU GLY ASN ILE LYS GLU ASN ALA VAL ARG MSE SEQRES 2 B 138 MSE GLU CYS ILE VAL ASN LYS ASP SER GLU LYS LEU PHE SEQRES 3 B 138 ASP PHE TYR ASN LYS ASP MSE LYS ASP ASN TYR LYS ASP SEQRES 4 B 138 SER SER LEU ASP GLU ILE ARG GLN LEU PHE GLU TYR ILE SEQRES 5 B 138 ASP GLY ALA ILE THR SER TYR ASN TYR GLU GLY LYS GLY SEQRES 6 B 138 GLY GLY GLN GLU ALA LYS ASN ASP GLY ILE ILE CYS TYR SEQRES 7 B 138 TYR SER CYS HIS PRO GLU PHE ASP PHE THR THR GLU THR SEQRES 8 B 138 GLY GLN GLU TYR THR ILE SER PHE SER TYR HIS TYR ILE SEQRES 9 B 138 TRP ASN GLU HIS PRO GLU TYR GLU GLY ILE ASN MSE ILE SEQRES 10 B 138 GLN ILE CYS LYS ASP GLY ASN TRP GLY GLU LYS LEU ILE SEQRES 11 B 138 ILE GLY ARG ASN TYR TYR LYS GLU MODRES 4R1K MSE A 41 MET SELENOMETHIONINE MODRES 4R1K MSE A 42 MET SELENOMETHIONINE MODRES 4R1K MSE A 61 MET SELENOMETHIONINE MODRES 4R1K MSE A 144 MET SELENOMETHIONINE MODRES 4R1K MSE B 41 MET SELENOMETHIONINE MODRES 4R1K MSE B 42 MET SELENOMETHIONINE MODRES 4R1K MSE B 61 MET SELENOMETHIONINE MODRES 4R1K MSE B 144 MET SELENOMETHIONINE HET MSE A 41 8 HET MSE A 42 8 HET MSE A 61 8 HET MSE A 144 8 HET MSE B 41 8 HET MSE B 42 8 HET MSE B 61 8 HET MSE B 144 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *4(H2 O) HELIX 1 1 GLY A 32 LYS A 48 1 17 HELIX 2 2 ASP A 49 ASP A 55 1 7 HELIX 3 3 ASN A 58 TYR A 65 1 8 HELIX 4 4 TYR A 65 TYR A 79 1 15 HELIX 5 5 HIS A 136 GLU A 140 5 5 HELIX 6 6 ASP B 30 LYS B 48 1 19 HELIX 7 7 ASP B 49 ASP B 55 1 7 HELIX 8 8 ASN B 58 TYR B 65 1 8 HELIX 9 9 TYR B 65 TYR B 79 1 15 HELIX 10 10 HIS B 136 GLU B 140 5 5 SHEET 1 A 5 ILE A 84 TYR A 89 0 SHEET 2 A 5 GLU A 112 THR A 117 -1 O ASP A 114 N ASN A 88 SHEET 3 A 5 GLU A 122 TRP A 133 -1 O TYR A 123 N PHE A 115 SHEET 4 A 5 ILE A 103 CYS A 109 -1 N CYS A 109 O TYR A 129 SHEET 5 A 5 GLU A 97 ASN A 100 -1 N ASN A 100 O ILE A 103 SHEET 1 B 5 ILE A 84 TYR A 89 0 SHEET 2 B 5 GLU A 112 THR A 117 -1 O ASP A 114 N ASN A 88 SHEET 3 B 5 GLU A 122 TRP A 133 -1 O TYR A 123 N PHE A 115 SHEET 4 B 5 GLY A 141 LYS A 149 -1 O MSE A 144 N SER A 128 SHEET 5 B 5 ASN A 152 GLY A 160 -1 O LEU A 157 N ILE A 147 SHEET 1 C 5 ILE B 84 TYR B 89 0 SHEET 2 C 5 GLU B 112 THR B 117 -1 O ASP B 114 N ASN B 88 SHEET 3 C 5 GLU B 122 TRP B 133 -1 O TYR B 123 N PHE B 115 SHEET 4 C 5 ILE B 103 CYS B 109 -1 N CYS B 109 O TYR B 129 SHEET 5 C 5 GLU B 97 ASN B 100 -1 N ASN B 100 O ILE B 103 SHEET 1 D 5 ILE B 84 TYR B 89 0 SHEET 2 D 5 GLU B 112 THR B 117 -1 O ASP B 114 N ASN B 88 SHEET 3 D 5 GLU B 122 TRP B 133 -1 O TYR B 123 N PHE B 115 SHEET 4 D 5 GLY B 141 LYS B 149 -1 O MSE B 144 N SER B 128 SHEET 5 D 5 ASN B 152 GLY B 160 -1 O LEU B 157 N ILE B 147 LINK C ARG A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N MSE A 42 1555 1555 1.34 LINK C MSE A 42 N GLU A 43 1555 1555 1.33 LINK C ASP A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N LYS A 62 1555 1555 1.33 LINK C ASN A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N ILE A 145 1555 1555 1.34 LINK C ARG B 40 N MSE B 41 1555 1555 1.35 LINK C MSE B 41 N MSE B 42 1555 1555 1.34 LINK C MSE B 42 N GLU B 43 1555 1555 1.34 LINK C ASP B 60 N MSE B 61 1555 1555 1.33 LINK C MSE B 61 N LYS B 62 1555 1555 1.33 LINK C ASN B 143 N MSE B 144 1555 1555 1.33 LINK C MSE B 144 N ILE B 145 1555 1555 1.34 CRYST1 105.646 59.318 58.411 90.00 101.38 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009466 0.000000 0.001905 0.00000 SCALE2 0.000000 0.016858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017463 0.00000