HEADER OXIDOREDUCTASE 07-AUG-14 4R1N TITLE CRYSTAL STRUCTURE OF (S)-3-HYDROXYBUTYLRYL-COA DEHYDROGENASE FORM THE TITLE 2 N-BUTANOL SYSNTHESIZING BACTERIUM, CLOSTRIDIUM BUTYRICUM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXYBUTYRYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.1.1.157; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BUTYRICUM E4 STR. BONT E BL5262; SOURCE 3 ORGANISM_TAXID: 632245; SOURCE 4 STRAIN: E4 STR. BONT E BL5262; SOURCE 5 GENE: CLP_3850, HBD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS NAD-BINDING ROSSMANN-FOLD DOMAINS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.J.KIM,S.W.KIM,K.J.KIM REVDAT 2 08-NOV-23 4R1N 1 REMARK REVDAT 1 29-JUL-15 4R1N 0 JRNL AUTH E.J.KIM,J.KIM,J.W.AHN,Y.J.KIM,J.H.CHANG,K.J.KIM JRNL TITL CRYSTAL STRUCTURE OF (S)-3-HYDROXYBUTYRYL-COA DEHYDROGENASE JRNL TITL 2 FROM CLOSTRIDIUM BUTYRICUM AND ITS MUTATIONS THAT ENHANCE JRNL TITL 3 REACTION KINETICS JRNL REF J MICROBIOL BIOTECHNOL. V. 24 1636 2014 JRNL REFN ISSN 1017-7825 JRNL PMID 25112316 JRNL DOI 10.4014/JMB.1407.07027 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 138506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 6846 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8779 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 456 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.090 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8624 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8688 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11612 ; 1.905 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 20088 ; 0.936 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1124 ; 6.646 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 312 ;37.875 ;25.128 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1652 ;16.999 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;15.796 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1384 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9524 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1668 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4508 ; 2.988 ; 3.302 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4507 ; 2.984 ; 3.300 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5628 ; 3.858 ; 4.930 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4R1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23985 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138509 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 30.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1F0Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M (NH4)2SO4,CAPS,LI2SO4, PH 10.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.23750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.28369 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.43167 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 73.23750 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 42.28369 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.43167 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 73.23750 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 42.28369 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.43167 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.56738 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 134.86333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 84.56738 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 134.86333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 84.56738 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 134.86333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 123 CD GLU A 123 OE2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 75 CG - SD - CE ANGL. DEV. = -11.3 DEGREES REMARK 500 ARG A 255 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 261 CG - CD - NE ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG C 255 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 265 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LYS C 272 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP D 103 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP D 236 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG D 261 CG - CD - NE ANGL. DEV. = -13.8 DEGREES REMARK 500 LYS D 272 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 185 -122.89 55.06 REMARK 500 VAL A 186 -60.10 -108.50 REMARK 500 TYR A 280 -164.68 -109.69 REMARK 500 SER A 281 -147.28 -147.91 REMARK 500 ALA B 88 -153.71 -111.47 REMARK 500 GLU B 181 123.71 -39.27 REMARK 500 PHE B 185 -122.11 53.56 REMARK 500 VAL B 186 -61.44 -109.97 REMARK 500 TYR B 280 -153.87 -104.21 REMARK 500 SER B 281 -134.96 -147.18 REMARK 500 ALA C 88 -169.59 -101.40 REMARK 500 PHE C 185 -123.97 55.69 REMARK 500 LYS D 2 -35.56 -132.60 REMARK 500 GLU D 55 57.34 -102.28 REMARK 500 ALA D 88 -160.73 -109.49 REMARK 500 PHE D 185 -125.37 51.59 REMARK 500 VAL D 186 -63.06 -102.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 4R1N A 1 282 UNP C4IEM5 C4IEM5_CLOBU 1 282 DBREF 4R1N B 1 282 UNP C4IEM5 C4IEM5_CLOBU 1 282 DBREF 4R1N C 1 282 UNP C4IEM5 C4IEM5_CLOBU 1 282 DBREF 4R1N D 1 282 UNP C4IEM5 C4IEM5_CLOBU 1 282 SEQRES 1 A 282 MET LYS LYS VAL PHE VAL LEU GLY ALA GLY THR MET GLY SEQRES 2 A 282 ALA GLY ILE VAL GLN ALA PHE ALA ALA LYS GLY CYS GLU SEQRES 3 A 282 VAL ILE VAL ARG ASP ILE LYS GLU GLU PHE VAL ASP ARG SEQRES 4 A 282 GLY ILE ALA THR ILE THR LYS SER LEU SER LYS LEU VAL SEQRES 5 A 282 ALA LYS GLU LYS ILE THR GLU ALA ASP LYS GLU GLU ILE SEQRES 6 A 282 LEU SER ARG ILE SER GLY THR THR ASP MET LYS LEU ALA SEQRES 7 A 282 ALA ASP CYS ASP LEU VAL VAL GLU ALA ALA ILE GLU ASN SEQRES 8 A 282 MET LYS ILE LYS LYS GLU ILE PHE ALA GLU LEU ASP GLY SEQRES 9 A 282 ILE CYS LYS PRO GLU THR ILE LEU ALA SER ASN THR SER SEQRES 10 A 282 SER LEU SER ILE THR GLU VAL ALA SER ALA THR LYS ARG SEQRES 11 A 282 ALA ASP LYS VAL ILE GLY MET HIS PHE PHE ASN PRO ALA SEQRES 12 A 282 PRO VAL MET LYS LEU VAL GLU VAL ILE ARG GLY ALA ALA SEQRES 13 A 282 THR SER GLN GLU THR PHE ASP ALA VAL LYS GLU MET SER SEQRES 14 A 282 GLU SER ILE GLY LYS THR PRO VAL GLU VAL ALA GLU ALA SEQRES 15 A 282 PRO GLY PHE VAL VAL ASN ARG ILE LEU ILE PRO MET ILE SEQRES 16 A 282 ASN GLU ALA THR PHE ILE LEU GLN GLU GLY VAL ALA LYS SEQRES 17 A 282 GLU GLU ASP ILE ASP ALA ALA MET LYS LEU GLY ALA ASN SEQRES 18 A 282 HIS PRO MET GLY PRO LEU ALA LEU GLY ASP LEU ILE GLY SEQRES 19 A 282 LEU ASP VAL CYS LEU ALA ILE MET ASP VAL LEU TYR ASN SEQRES 20 A 282 GLU THR GLY ASP THR LYS TYR ARG ALA SER SER LEU LEU SEQRES 21 A 282 ARG LYS TYR VAL ARG ALA GLY TRP LEU GLY ARG LYS THR SEQRES 22 A 282 GLY LYS GLY PHE TYR ASP TYR SER LYS SEQRES 1 B 282 MET LYS LYS VAL PHE VAL LEU GLY ALA GLY THR MET GLY SEQRES 2 B 282 ALA GLY ILE VAL GLN ALA PHE ALA ALA LYS GLY CYS GLU SEQRES 3 B 282 VAL ILE VAL ARG ASP ILE LYS GLU GLU PHE VAL ASP ARG SEQRES 4 B 282 GLY ILE ALA THR ILE THR LYS SER LEU SER LYS LEU VAL SEQRES 5 B 282 ALA LYS GLU LYS ILE THR GLU ALA ASP LYS GLU GLU ILE SEQRES 6 B 282 LEU SER ARG ILE SER GLY THR THR ASP MET LYS LEU ALA SEQRES 7 B 282 ALA ASP CYS ASP LEU VAL VAL GLU ALA ALA ILE GLU ASN SEQRES 8 B 282 MET LYS ILE LYS LYS GLU ILE PHE ALA GLU LEU ASP GLY SEQRES 9 B 282 ILE CYS LYS PRO GLU THR ILE LEU ALA SER ASN THR SER SEQRES 10 B 282 SER LEU SER ILE THR GLU VAL ALA SER ALA THR LYS ARG SEQRES 11 B 282 ALA ASP LYS VAL ILE GLY MET HIS PHE PHE ASN PRO ALA SEQRES 12 B 282 PRO VAL MET LYS LEU VAL GLU VAL ILE ARG GLY ALA ALA SEQRES 13 B 282 THR SER GLN GLU THR PHE ASP ALA VAL LYS GLU MET SER SEQRES 14 B 282 GLU SER ILE GLY LYS THR PRO VAL GLU VAL ALA GLU ALA SEQRES 15 B 282 PRO GLY PHE VAL VAL ASN ARG ILE LEU ILE PRO MET ILE SEQRES 16 B 282 ASN GLU ALA THR PHE ILE LEU GLN GLU GLY VAL ALA LYS SEQRES 17 B 282 GLU GLU ASP ILE ASP ALA ALA MET LYS LEU GLY ALA ASN SEQRES 18 B 282 HIS PRO MET GLY PRO LEU ALA LEU GLY ASP LEU ILE GLY SEQRES 19 B 282 LEU ASP VAL CYS LEU ALA ILE MET ASP VAL LEU TYR ASN SEQRES 20 B 282 GLU THR GLY ASP THR LYS TYR ARG ALA SER SER LEU LEU SEQRES 21 B 282 ARG LYS TYR VAL ARG ALA GLY TRP LEU GLY ARG LYS THR SEQRES 22 B 282 GLY LYS GLY PHE TYR ASP TYR SER LYS SEQRES 1 C 282 MET LYS LYS VAL PHE VAL LEU GLY ALA GLY THR MET GLY SEQRES 2 C 282 ALA GLY ILE VAL GLN ALA PHE ALA ALA LYS GLY CYS GLU SEQRES 3 C 282 VAL ILE VAL ARG ASP ILE LYS GLU GLU PHE VAL ASP ARG SEQRES 4 C 282 GLY ILE ALA THR ILE THR LYS SER LEU SER LYS LEU VAL SEQRES 5 C 282 ALA LYS GLU LYS ILE THR GLU ALA ASP LYS GLU GLU ILE SEQRES 6 C 282 LEU SER ARG ILE SER GLY THR THR ASP MET LYS LEU ALA SEQRES 7 C 282 ALA ASP CYS ASP LEU VAL VAL GLU ALA ALA ILE GLU ASN SEQRES 8 C 282 MET LYS ILE LYS LYS GLU ILE PHE ALA GLU LEU ASP GLY SEQRES 9 C 282 ILE CYS LYS PRO GLU THR ILE LEU ALA SER ASN THR SER SEQRES 10 C 282 SER LEU SER ILE THR GLU VAL ALA SER ALA THR LYS ARG SEQRES 11 C 282 ALA ASP LYS VAL ILE GLY MET HIS PHE PHE ASN PRO ALA SEQRES 12 C 282 PRO VAL MET LYS LEU VAL GLU VAL ILE ARG GLY ALA ALA SEQRES 13 C 282 THR SER GLN GLU THR PHE ASP ALA VAL LYS GLU MET SER SEQRES 14 C 282 GLU SER ILE GLY LYS THR PRO VAL GLU VAL ALA GLU ALA SEQRES 15 C 282 PRO GLY PHE VAL VAL ASN ARG ILE LEU ILE PRO MET ILE SEQRES 16 C 282 ASN GLU ALA THR PHE ILE LEU GLN GLU GLY VAL ALA LYS SEQRES 17 C 282 GLU GLU ASP ILE ASP ALA ALA MET LYS LEU GLY ALA ASN SEQRES 18 C 282 HIS PRO MET GLY PRO LEU ALA LEU GLY ASP LEU ILE GLY SEQRES 19 C 282 LEU ASP VAL CYS LEU ALA ILE MET ASP VAL LEU TYR ASN SEQRES 20 C 282 GLU THR GLY ASP THR LYS TYR ARG ALA SER SER LEU LEU SEQRES 21 C 282 ARG LYS TYR VAL ARG ALA GLY TRP LEU GLY ARG LYS THR SEQRES 22 C 282 GLY LYS GLY PHE TYR ASP TYR SER LYS SEQRES 1 D 282 MET LYS LYS VAL PHE VAL LEU GLY ALA GLY THR MET GLY SEQRES 2 D 282 ALA GLY ILE VAL GLN ALA PHE ALA ALA LYS GLY CYS GLU SEQRES 3 D 282 VAL ILE VAL ARG ASP ILE LYS GLU GLU PHE VAL ASP ARG SEQRES 4 D 282 GLY ILE ALA THR ILE THR LYS SER LEU SER LYS LEU VAL SEQRES 5 D 282 ALA LYS GLU LYS ILE THR GLU ALA ASP LYS GLU GLU ILE SEQRES 6 D 282 LEU SER ARG ILE SER GLY THR THR ASP MET LYS LEU ALA SEQRES 7 D 282 ALA ASP CYS ASP LEU VAL VAL GLU ALA ALA ILE GLU ASN SEQRES 8 D 282 MET LYS ILE LYS LYS GLU ILE PHE ALA GLU LEU ASP GLY SEQRES 9 D 282 ILE CYS LYS PRO GLU THR ILE LEU ALA SER ASN THR SER SEQRES 10 D 282 SER LEU SER ILE THR GLU VAL ALA SER ALA THR LYS ARG SEQRES 11 D 282 ALA ASP LYS VAL ILE GLY MET HIS PHE PHE ASN PRO ALA SEQRES 12 D 282 PRO VAL MET LYS LEU VAL GLU VAL ILE ARG GLY ALA ALA SEQRES 13 D 282 THR SER GLN GLU THR PHE ASP ALA VAL LYS GLU MET SER SEQRES 14 D 282 GLU SER ILE GLY LYS THR PRO VAL GLU VAL ALA GLU ALA SEQRES 15 D 282 PRO GLY PHE VAL VAL ASN ARG ILE LEU ILE PRO MET ILE SEQRES 16 D 282 ASN GLU ALA THR PHE ILE LEU GLN GLU GLY VAL ALA LYS SEQRES 17 D 282 GLU GLU ASP ILE ASP ALA ALA MET LYS LEU GLY ALA ASN SEQRES 18 D 282 HIS PRO MET GLY PRO LEU ALA LEU GLY ASP LEU ILE GLY SEQRES 19 D 282 LEU ASP VAL CYS LEU ALA ILE MET ASP VAL LEU TYR ASN SEQRES 20 D 282 GLU THR GLY ASP THR LYS TYR ARG ALA SER SER LEU LEU SEQRES 21 D 282 ARG LYS TYR VAL ARG ALA GLY TRP LEU GLY ARG LYS THR SEQRES 22 D 282 GLY LYS GLY PHE TYR ASP TYR SER LYS FORMUL 5 HOH *236(H2 O) HELIX 1 1 GLY A 10 ALA A 22 1 13 HELIX 2 2 LYS A 33 LYS A 54 1 22 HELIX 3 3 THR A 58 ARG A 68 1 11 HELIX 4 4 ASP A 74 ALA A 79 5 6 HELIX 5 5 ASN A 91 CYS A 106 1 16 HELIX 6 6 SER A 120 SER A 126 1 7 HELIX 7 7 ARG A 130 ASP A 132 5 3 HELIX 8 8 SER A 158 ILE A 172 1 15 HELIX 9 9 VAL A 186 GLU A 204 1 19 HELIX 10 10 LYS A 208 ASN A 221 1 14 HELIX 11 11 GLY A 225 GLY A 234 1 10 HELIX 12 12 GLY A 234 GLY A 250 1 17 HELIX 13 13 ASP A 251 ARG A 255 5 5 HELIX 14 14 SER A 257 ALA A 266 1 10 HELIX 15 15 GLY A 270 GLY A 274 5 5 HELIX 16 16 GLY B 10 ALA B 22 1 13 HELIX 17 17 LYS B 33 LYS B 54 1 22 HELIX 18 18 THR B 58 ARG B 68 1 11 HELIX 19 19 ASP B 74 CYS B 81 5 8 HELIX 20 20 ASN B 91 CYS B 106 1 16 HELIX 21 21 SER B 120 SER B 126 1 7 HELIX 22 22 ARG B 130 ASP B 132 5 3 HELIX 23 23 SER B 158 ILE B 172 1 15 HELIX 24 24 VAL B 186 GLU B 204 1 19 HELIX 25 25 LYS B 208 ASN B 221 1 14 HELIX 26 26 GLY B 225 GLY B 234 1 10 HELIX 27 27 GLY B 234 GLY B 250 1 17 HELIX 28 28 ASP B 251 ARG B 255 5 5 HELIX 29 29 SER B 257 ALA B 266 1 10 HELIX 30 30 GLY B 270 GLY B 274 5 5 HELIX 31 31 GLY C 10 ALA C 22 1 13 HELIX 32 32 LYS C 33 LYS C 54 1 22 HELIX 33 33 THR C 58 ARG C 68 1 11 HELIX 34 34 ASP C 74 ALA C 79 5 6 HELIX 35 35 ASN C 91 CYS C 106 1 16 HELIX 36 36 SER C 120 ALA C 127 1 8 HELIX 37 37 ARG C 130 ASP C 132 5 3 HELIX 38 38 SER C 158 ILE C 172 1 15 HELIX 39 39 VAL C 186 GLU C 204 1 19 HELIX 40 40 LYS C 208 ALA C 220 1 13 HELIX 41 41 GLY C 225 GLY C 234 1 10 HELIX 42 42 GLY C 234 GLY C 250 1 17 HELIX 43 43 ASP C 251 ARG C 255 5 5 HELIX 44 44 SER C 257 ALA C 266 1 10 HELIX 45 45 GLY C 270 GLY C 274 5 5 HELIX 46 46 GLY D 10 ALA D 22 1 13 HELIX 47 47 LYS D 33 LYS D 54 1 22 HELIX 48 48 THR D 58 ARG D 68 1 11 HELIX 49 49 ASP D 74 ALA D 79 5 6 HELIX 50 50 ASN D 91 CYS D 106 1 16 HELIX 51 51 SER D 120 SER D 126 1 7 HELIX 52 52 ARG D 130 ASP D 132 5 3 HELIX 53 53 SER D 158 ILE D 172 1 15 HELIX 54 54 VAL D 186 GLU D 204 1 19 HELIX 55 55 LYS D 208 ASN D 221 1 14 HELIX 56 56 GLY D 225 GLY D 234 1 10 HELIX 57 57 GLY D 234 GLY D 250 1 17 HELIX 58 58 ASP D 251 ARG D 255 5 5 HELIX 59 59 SER D 257 ALA D 266 1 10 HELIX 60 60 GLY D 270 GLY D 274 5 5 SHEET 1 A 8 ILE A 69 THR A 72 0 SHEET 2 A 8 GLU A 26 ARG A 30 1 N VAL A 29 O SER A 70 SHEET 3 A 8 LYS A 3 LEU A 7 1 N VAL A 4 O GLU A 26 SHEET 4 A 8 LEU A 83 GLU A 86 1 O VAL A 85 N PHE A 5 SHEET 5 A 8 ILE A 111 SER A 114 1 O ALA A 113 N GLU A 86 SHEET 6 A 8 VAL A 134 HIS A 138 1 O MET A 137 N SER A 114 SHEET 7 A 8 LEU A 148 ARG A 153 -1 O GLU A 150 N HIS A 138 SHEET 8 A 8 THR A 175 ALA A 180 1 O VAL A 179 N ARG A 153 SHEET 1 B 8 ILE B 69 THR B 72 0 SHEET 2 B 8 GLU B 26 ARG B 30 1 N VAL B 29 O SER B 70 SHEET 3 B 8 LYS B 3 LEU B 7 1 N VAL B 6 O ILE B 28 SHEET 4 B 8 LEU B 83 GLU B 86 1 O VAL B 85 N PHE B 5 SHEET 5 B 8 ILE B 111 SER B 114 1 O ALA B 113 N GLU B 86 SHEET 6 B 8 VAL B 134 HIS B 138 1 O MET B 137 N SER B 114 SHEET 7 B 8 LEU B 148 ARG B 153 -1 O GLU B 150 N HIS B 138 SHEET 8 B 8 THR B 175 ALA B 180 1 O VAL B 177 N VAL B 151 SHEET 1 C 8 ILE C 69 THR C 72 0 SHEET 2 C 8 GLU C 26 ARG C 30 1 N VAL C 29 O SER C 70 SHEET 3 C 8 LYS C 3 LEU C 7 1 N VAL C 4 O ILE C 28 SHEET 4 C 8 LEU C 83 GLU C 86 1 O VAL C 85 N PHE C 5 SHEET 5 C 8 ILE C 111 SER C 114 1 O ALA C 113 N GLU C 86 SHEET 6 C 8 VAL C 134 HIS C 138 1 O MET C 137 N SER C 114 SHEET 7 C 8 LEU C 148 ARG C 153 -1 O GLU C 150 N HIS C 138 SHEET 8 C 8 THR C 175 ALA C 180 1 O VAL C 177 N VAL C 151 SHEET 1 D 8 ILE D 69 THR D 72 0 SHEET 2 D 8 GLU D 26 ARG D 30 1 N VAL D 29 O SER D 70 SHEET 3 D 8 LYS D 3 LEU D 7 1 N VAL D 6 O ARG D 30 SHEET 4 D 8 LEU D 83 GLU D 86 1 O LEU D 83 N PHE D 5 SHEET 5 D 8 ILE D 111 SER D 114 1 O ALA D 113 N GLU D 86 SHEET 6 D 8 VAL D 134 HIS D 138 1 O MET D 137 N SER D 114 SHEET 7 D 8 LEU D 148 ARG D 153 -1 O GLU D 150 N HIS D 138 SHEET 8 D 8 THR D 175 ALA D 180 1 O VAL D 179 N ARG D 153 CISPEP 1 ASN A 141 PRO A 142 0 -6.23 CISPEP 2 ASN B 141 PRO B 142 0 -7.42 CISPEP 3 ASN C 141 PRO C 142 0 -4.42 CISPEP 4 ASN D 141 PRO D 142 0 -8.20 CISPEP 5 SER D 281 LYS D 282 0 5.53 CRYST1 146.475 146.475 202.295 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006827 0.003942 0.000000 0.00000 SCALE2 0.000000 0.007883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004943 0.00000