HEADER OXIDOREDUCTASE 07-AUG-14 4R1S TITLE CRYSTAL STRUCTURE OF PETUNIA HYDRIDA CINNAMOYL-COA REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CINNAMOYL COA REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PETUNIA X HYBRIDA; SOURCE 3 ORGANISM_COMMON: GARDEN PETUNIA; SOURCE 4 ORGANISM_TAXID: 4102; SOURCE 5 GENE: PHCCR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS8 KEYWDS CINNAMOYL-COA REDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.NOEL,G.V.LOUIE,M.E.BOWMAN,E.K.BOMATI REVDAT 3 28-FEB-24 4R1S 1 REMARK REVDAT 2 12-NOV-14 4R1S 1 JRNL REVDAT 1 01-OCT-14 4R1S 0 JRNL AUTH H.PAN,R.ZHOU,G.V.LOUIE,J.K.MUHLEMANN,E.K.BOMATI,M.E.BOWMAN, JRNL AUTH 2 N.DUDAREVA,R.A.DIXON,J.P.NOEL,X.WANG JRNL TITL STRUCTURAL STUDIES OF CINNAMOYL-COA REDUCTASE AND JRNL TITL 2 CINNAMYL-ALCOHOL DEHYDROGENASE, KEY ENZYMES OF MONOLIGNOL JRNL TITL 3 BIOSYNTHESIS. JRNL REF PLANT CELL V. 26 3709 2014 JRNL REFN ISSN 1040-4651 JRNL PMID 25217505 JRNL DOI 10.1105/TPC.114.127399 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 98499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 4909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1555 - 4.9690 1.00 3770 171 0.1778 0.1949 REMARK 3 2 4.9690 - 3.9450 1.00 3579 192 0.1440 0.1473 REMARK 3 3 3.9450 - 3.4466 1.00 3532 180 0.1563 0.1528 REMARK 3 4 3.4466 - 3.1316 1.00 3524 186 0.1649 0.1805 REMARK 3 5 3.1316 - 2.9072 1.00 3498 179 0.1659 0.2330 REMARK 3 6 2.9072 - 2.7358 1.00 3482 174 0.1617 0.1859 REMARK 3 7 2.7358 - 2.5988 1.00 3507 163 0.1578 0.1963 REMARK 3 8 2.5988 - 2.4857 1.00 3486 183 0.1601 0.1760 REMARK 3 9 2.4857 - 2.3900 1.00 3464 173 0.1565 0.1795 REMARK 3 10 2.3900 - 2.3075 1.00 3462 178 0.1563 0.1841 REMARK 3 11 2.3075 - 2.2354 1.00 3452 180 0.1588 0.2082 REMARK 3 12 2.2354 - 2.1715 1.00 3437 207 0.1559 0.1890 REMARK 3 13 2.1715 - 2.1143 1.00 3470 147 0.1573 0.1771 REMARK 3 14 2.1143 - 2.0627 1.00 3435 194 0.1669 0.1862 REMARK 3 15 2.0627 - 2.0159 1.00 3414 196 0.1726 0.1988 REMARK 3 16 2.0159 - 1.9730 0.94 3206 183 0.1777 0.2192 REMARK 3 17 1.9730 - 1.9335 0.89 3032 166 0.1749 0.1966 REMARK 3 18 1.9335 - 1.8970 0.89 3092 140 0.1876 0.2069 REMARK 3 19 1.8970 - 1.8631 0.90 3055 190 0.1847 0.1974 REMARK 3 20 1.8631 - 1.8315 0.90 3057 164 0.1910 0.2443 REMARK 3 21 1.8315 - 1.8020 0.91 3122 169 0.1957 0.2315 REMARK 3 22 1.8020 - 1.7743 0.90 3055 168 0.2120 0.2597 REMARK 3 23 1.7743 - 1.7482 0.91 3151 140 0.2203 0.2756 REMARK 3 24 1.7482 - 1.7236 0.90 3088 174 0.2263 0.2528 REMARK 3 25 1.7236 - 1.7003 0.92 3130 184 0.2331 0.2926 REMARK 3 26 1.7003 - 1.6782 0.64 2181 118 0.2220 0.2426 REMARK 3 27 1.6782 - 1.6572 0.62 2099 116 0.2263 0.2040 REMARK 3 28 1.6572 - 1.6372 0.58 2006 105 0.2300 0.2830 REMARK 3 29 1.6372 - 1.6182 0.57 1933 95 0.2299 0.2642 REMARK 3 30 1.6182 - 1.6000 0.55 1871 94 0.2396 0.2746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5157 REMARK 3 ANGLE : 1.381 7042 REMARK 3 CHIRALITY : 0.095 812 REMARK 3 PLANARITY : 0.007 890 REMARK 3 DIHEDRAL : 14.590 1910 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1684 14.6458 9.5575 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.2337 REMARK 3 T33: 0.1526 T12: 0.0078 REMARK 3 T13: 0.0098 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.3187 L22: 0.6151 REMARK 3 L33: 1.7425 L12: -0.4059 REMARK 3 L13: 0.4262 L23: -0.1750 REMARK 3 S TENSOR REMARK 3 S11: -0.0538 S12: 0.3063 S13: 0.1648 REMARK 3 S21: -0.0515 S22: -0.0753 S23: -0.1275 REMARK 3 S31: -0.0249 S32: 0.3847 S33: 0.0734 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9676 1.4808 13.5540 REMARK 3 T TENSOR REMARK 3 T11: 0.2085 T22: 0.1770 REMARK 3 T33: 0.2296 T12: -0.0733 REMARK 3 T13: 0.0430 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 1.1382 L22: 1.9712 REMARK 3 L33: 1.2374 L12: -1.3812 REMARK 3 L13: 0.6517 L23: -0.1049 REMARK 3 S TENSOR REMARK 3 S11: -0.0819 S12: 0.1640 S13: -0.3390 REMARK 3 S21: 0.0811 S22: 0.0620 S23: 0.4003 REMARK 3 S31: 0.4096 S32: -0.4090 S33: 0.0190 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2205 2.2128 28.9882 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.0830 REMARK 3 T33: 0.1596 T12: 0.0488 REMARK 3 T13: 0.0451 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.0898 L22: -0.0370 REMARK 3 L33: 2.0518 L12: -0.0474 REMARK 3 L13: -0.0568 L23: -0.2266 REMARK 3 S TENSOR REMARK 3 S11: -0.0822 S12: -0.0791 S13: -0.1470 REMARK 3 S21: 0.0111 S22: -0.0230 S23: -0.0072 REMARK 3 S31: 0.4607 S32: 0.2310 S33: 0.0511 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8708 13.9040 35.5446 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.2361 REMARK 3 T33: 0.1880 T12: -0.0062 REMARK 3 T13: 0.0241 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 3.0281 L22: 2.9827 REMARK 3 L33: 2.9318 L12: 0.3812 REMARK 3 L13: 0.0179 L23: -0.0635 REMARK 3 S TENSOR REMARK 3 S11: -0.0790 S12: -0.1996 S13: 0.1699 REMARK 3 S21: 0.1229 S22: 0.2126 S23: 0.1159 REMARK 3 S31: -0.0911 S32: 0.6466 S33: -0.0560 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2633 34.0884 45.9074 REMARK 3 T TENSOR REMARK 3 T11: 0.3338 T22: 0.1231 REMARK 3 T33: 0.1874 T12: 0.0496 REMARK 3 T13: 0.0337 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.1294 L22: 1.0215 REMARK 3 L33: 1.2018 L12: -0.2577 REMARK 3 L13: -0.0569 L23: 0.0457 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.0089 S13: 0.2357 REMARK 3 S21: -0.0786 S22: -0.0025 S23: -0.0942 REMARK 3 S31: -0.5488 S32: -0.0267 S33: -0.0213 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9930 16.6269 42.5048 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.2763 REMARK 3 T33: 0.2003 T12: -0.0214 REMARK 3 T13: 0.0238 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 1.9291 L22: 0.8540 REMARK 3 L33: 1.0008 L12: -0.6223 REMARK 3 L13: 0.3511 L23: -0.2319 REMARK 3 S TENSOR REMARK 3 S11: 0.0683 S12: 0.0027 S13: -0.2828 REMARK 3 S21: 0.0426 S22: -0.1024 S23: 0.2337 REMARK 3 S31: 0.1136 S32: -0.5303 S33: 0.0632 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 176 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1729 28.9232 25.9451 REMARK 3 T TENSOR REMARK 3 T11: 0.2817 T22: 0.3317 REMARK 3 T33: 0.1921 T12: 0.1673 REMARK 3 T13: -0.0051 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.3016 L22: 0.7746 REMARK 3 L33: 1.7702 L12: -0.0526 REMARK 3 L13: -0.2861 L23: 1.0626 REMARK 3 S TENSOR REMARK 3 S11: 0.0981 S12: 0.1810 S13: 0.1128 REMARK 3 S21: -0.1876 S22: -0.1668 S23: 0.1128 REMARK 3 S31: -0.6409 S32: -0.6842 S33: 0.0223 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0364 12.9773 17.3787 REMARK 3 T TENSOR REMARK 3 T11: 0.1088 T22: 0.1206 REMARK 3 T33: 0.1385 T12: 0.0110 REMARK 3 T13: -0.0163 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.0571 L22: 0.0080 REMARK 3 L33: 0.1796 L12: 0.0154 REMARK 3 L13: -0.0599 L23: -0.0441 REMARK 3 S TENSOR REMARK 3 S11: -0.1148 S12: 0.1285 S13: 0.0627 REMARK 3 S21: 0.1618 S22: -0.0080 S23: -0.0800 REMARK 3 S31: -0.0235 S32: -0.0741 S33: -0.0034 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 401 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3287 25.6909 38.3352 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.1860 REMARK 3 T33: 0.1406 T12: 0.0766 REMARK 3 T13: -0.0033 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.0211 L22: 0.2307 REMARK 3 L33: 0.2459 L12: -0.0107 REMARK 3 L13: -0.0225 L23: -0.2007 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: 0.0132 S13: 0.0033 REMARK 3 S21: -0.0939 S22: -0.0706 S23: -0.0589 REMARK 3 S31: -0.2475 S32: -0.0935 S33: -0.0208 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98640 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.448 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : 0.27800 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 5.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% (W/V) POLYETHYLENE GLYCOL 3350, REMARK 280 0.3 M CALCIUM ACETATE, 100 MM SODIUM SUCCINATE, 5 MM NADP+, 0.2 REMARK 280 M SODIUM IODIDE, AND 2 MM DTT, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.08850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.11950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.61600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 111.11950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.08850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.61600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 GLN A 323 REMARK 465 LYS A 324 REMARK 465 ASP A 325 REMARK 465 GLU A 326 REMARK 465 PRO A 327 REMARK 465 ILE A 328 REMARK 465 ILE A 329 REMARK 465 ARG A 330 REMARK 465 ILE A 331 REMARK 465 GLN A 332 REMARK 465 PRO A 333 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 SER B 3 REMARK 465 THR B 322 REMARK 465 GLN B 323 REMARK 465 LYS B 324 REMARK 465 ASP B 325 REMARK 465 GLU B 326 REMARK 465 PRO B 327 REMARK 465 ILE B 328 REMARK 465 ILE B 329 REMARK 465 ARG B 330 REMARK 465 ILE B 331 REMARK 465 GLN B 332 REMARK 465 PRO B 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 55 O HOH A 759 1.41 REMARK 500 HH21 ARG A 38 O3X NAP A 401 1.47 REMARK 500 HH12 ARG B 38 O HOH B 680 1.57 REMARK 500 O HOH B 663 O HOH B 793 1.85 REMARK 500 O HOH B 755 O HOH B 756 1.86 REMARK 500 O HOH A 552 O HOH A 781 1.87 REMARK 500 O HOH A 583 O HOH A 641 1.94 REMARK 500 O HOH A 559 O HOH A 849 1.94 REMARK 500 O HOH A 559 O HOH A 702 1.96 REMARK 500 O HOH B 604 O HOH B 690 1.97 REMARK 500 O HOH A 711 O HOH A 860 1.99 REMARK 500 O HOH B 754 O HOH B 790 2.04 REMARK 500 O HOH B 791 O HOH B 798 2.06 REMARK 500 O HOH A 608 O HOH A 652 2.07 REMARK 500 O HOH A 646 O HOH A 849 2.09 REMARK 500 OE2 GLU A 56 O HOH A 703 2.10 REMARK 500 O HOH A 738 O HOH B 714 2.12 REMARK 500 O HOH A 829 O HOH A 864 2.12 REMARK 500 O HOH A 579 O HOH A 706 2.13 REMARK 500 O HOH B 697 O HOH B 796 2.13 REMARK 500 O HOH B 662 O HOH B 688 2.14 REMARK 500 OD1 ASN B 39 O HOH B 759 2.15 REMARK 500 NZ LYS B 225 O HOH B 788 2.15 REMARK 500 O HOH B 610 O HOH B 677 2.15 REMARK 500 O HOH A 519 O HOH A 641 2.17 REMARK 500 O HOH A 535 O HOH A 823 2.17 REMARK 500 O HOH B 652 O HOH B 783 2.17 REMARK 500 O HOH B 583 O HOH B 789 2.18 REMARK 500 O HOH A 675 O HOH A 788 2.19 REMARK 500 OE1 GLU B 141 O HOH B 604 2.19 REMARK 500 O HOH A 713 O HOH A 781 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 625 O HOH B 789 3545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 304 CB CYS A 304 SG -0.137 REMARK 500 CYS B 304 CB CYS B 304 SG -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 122 -142.61 -90.86 REMARK 500 ARG A 133 125.96 -35.39 REMARK 500 ASP A 275 112.30 -161.88 REMARK 500 SER B 122 -142.34 -94.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R1T RELATED DB: PDB REMARK 900 RELATED ID: 4R1U RELATED DB: PDB DBREF 4R1S A -3 333 PDB 4R1S 4R1S -3 333 DBREF 4R1S B -3 333 PDB 4R1S 4R1S -3 333 SEQRES 1 A 337 GLY SER HIS GLY MET ARG SER VAL SER GLY GLN VAL VAL SEQRES 2 A 337 CYS VAL THR GLY ALA GLY GLY PHE ILE ALA SER TRP LEU SEQRES 3 A 337 VAL LYS ILE LEU LEU GLU LYS GLY TYR THR VAL ARG GLY SEQRES 4 A 337 THR VAL ARG ASN PRO ASP ASP PRO LYS ASN GLY HIS LEU SEQRES 5 A 337 ARG GLU LEU GLU GLY ALA LYS GLU ARG LEU THR LEU CYS SEQRES 6 A 337 LYS ALA ASP LEU LEU ASP TYR GLN SER LEU ARG GLU ALA SEQRES 7 A 337 ILE ASN GLY CYS ASP GLY VAL PHE HIS THR ALA SER PRO SEQRES 8 A 337 VAL THR ASP ASP PRO GLU GLN MET VAL GLU PRO ALA VAL SEQRES 9 A 337 ILE GLY THR LYS ASN VAL ILE ASN ALA ALA ALA GLU ALA SEQRES 10 A 337 ASN VAL ARG ARG VAL VAL PHE THR SER SER ILE GLY ALA SEQRES 11 A 337 VAL TYR MET ASP PRO ASN ARG ASP PRO GLU THR VAL VAL SEQRES 12 A 337 ASP GLU THR CYS TRP SER ASP PRO ASP PHE CYS LYS ASN SEQRES 13 A 337 THR LYS ASN TRP TYR CYS TYR GLY LYS MET VAL ALA GLU SEQRES 14 A 337 GLN ALA ALA TRP GLU GLU ALA LYS GLU LYS GLY VAL ASP SEQRES 15 A 337 LEU VAL VAL ILE ASN PRO VAL LEU VAL GLN GLY PRO LEU SEQRES 16 A 337 LEU GLN THR THR VAL ASN ALA SER VAL LEU HIS ILE LEU SEQRES 17 A 337 LYS TYR LEU THR GLY SER ALA LYS THR TYR ALA ASN SER SEQRES 18 A 337 VAL GLN ALA TYR VAL ASP VAL LYS ASP VAL ALA LEU ALA SEQRES 19 A 337 HIS ILE LEU LEU TYR GLU THR PRO GLU ALA SER GLY ARG SEQRES 20 A 337 TYR LEU CYS ALA GLU SER VAL LEU HIS ARG GLY ASP VAL SEQRES 21 A 337 VAL GLU ILE LEU SER LYS PHE PHE PRO GLU TYR PRO ILE SEQRES 22 A 337 PRO THR LYS CYS SER ASP VAL THR LYS PRO ARG VAL LYS SEQRES 23 A 337 PRO TYR LYS PHE SER ASN GLN LYS LEU LYS ASP LEU GLY SEQRES 24 A 337 LEU GLU PHE THR PRO VAL LYS GLN CYS LEU TYR GLU THR SEQRES 25 A 337 VAL LYS SER LEU GLN GLU LYS GLY HIS LEU PRO ILE PRO SEQRES 26 A 337 THR GLN LYS ASP GLU PRO ILE ILE ARG ILE GLN PRO SEQRES 1 B 337 GLY SER HIS GLY MET ARG SER VAL SER GLY GLN VAL VAL SEQRES 2 B 337 CYS VAL THR GLY ALA GLY GLY PHE ILE ALA SER TRP LEU SEQRES 3 B 337 VAL LYS ILE LEU LEU GLU LYS GLY TYR THR VAL ARG GLY SEQRES 4 B 337 THR VAL ARG ASN PRO ASP ASP PRO LYS ASN GLY HIS LEU SEQRES 5 B 337 ARG GLU LEU GLU GLY ALA LYS GLU ARG LEU THR LEU CYS SEQRES 6 B 337 LYS ALA ASP LEU LEU ASP TYR GLN SER LEU ARG GLU ALA SEQRES 7 B 337 ILE ASN GLY CYS ASP GLY VAL PHE HIS THR ALA SER PRO SEQRES 8 B 337 VAL THR ASP ASP PRO GLU GLN MET VAL GLU PRO ALA VAL SEQRES 9 B 337 ILE GLY THR LYS ASN VAL ILE ASN ALA ALA ALA GLU ALA SEQRES 10 B 337 ASN VAL ARG ARG VAL VAL PHE THR SER SER ILE GLY ALA SEQRES 11 B 337 VAL TYR MET ASP PRO ASN ARG ASP PRO GLU THR VAL VAL SEQRES 12 B 337 ASP GLU THR CYS TRP SER ASP PRO ASP PHE CYS LYS ASN SEQRES 13 B 337 THR LYS ASN TRP TYR CYS TYR GLY LYS MET VAL ALA GLU SEQRES 14 B 337 GLN ALA ALA TRP GLU GLU ALA LYS GLU LYS GLY VAL ASP SEQRES 15 B 337 LEU VAL VAL ILE ASN PRO VAL LEU VAL GLN GLY PRO LEU SEQRES 16 B 337 LEU GLN THR THR VAL ASN ALA SER VAL LEU HIS ILE LEU SEQRES 17 B 337 LYS TYR LEU THR GLY SER ALA LYS THR TYR ALA ASN SER SEQRES 18 B 337 VAL GLN ALA TYR VAL ASP VAL LYS ASP VAL ALA LEU ALA SEQRES 19 B 337 HIS ILE LEU LEU TYR GLU THR PRO GLU ALA SER GLY ARG SEQRES 20 B 337 TYR LEU CYS ALA GLU SER VAL LEU HIS ARG GLY ASP VAL SEQRES 21 B 337 VAL GLU ILE LEU SER LYS PHE PHE PRO GLU TYR PRO ILE SEQRES 22 B 337 PRO THR LYS CYS SER ASP VAL THR LYS PRO ARG VAL LYS SEQRES 23 B 337 PRO TYR LYS PHE SER ASN GLN LYS LEU LYS ASP LEU GLY SEQRES 24 B 337 LEU GLU PHE THR PRO VAL LYS GLN CYS LEU TYR GLU THR SEQRES 25 B 337 VAL LYS SER LEU GLN GLU LYS GLY HIS LEU PRO ILE PRO SEQRES 26 B 337 THR GLN LYS ASP GLU PRO ILE ILE ARG ILE GLN PRO HET NAP A 401 73 HET NAP B 401 73 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *708(H2 O) HELIX 1 1 GLY A 16 LYS A 29 1 14 HELIX 2 2 ASP A 42 LYS A 44 5 3 HELIX 3 3 ASN A 45 GLU A 50 1 6 HELIX 4 4 GLY A 53 ARG A 57 1 5 HELIX 5 5 ASP A 67 ASN A 76 1 10 HELIX 6 6 ASP A 91 ALA A 113 1 23 HELIX 7 7 SER A 123 VAL A 127 5 5 HELIX 8 8 ASP A 146 THR A 153 1 8 HELIX 9 9 ASN A 155 GLY A 176 1 22 HELIX 10 10 ASN A 197 THR A 208 1 12 HELIX 11 11 VAL A 224 THR A 237 1 14 HELIX 12 12 ARG A 253 PHE A 264 1 12 HELIX 13 13 ASN A 288 LEU A 294 1 7 HELIX 14 14 PRO A 300 LYS A 315 1 16 HELIX 15 15 GLY B 16 LYS B 29 1 14 HELIX 16 16 ASP B 42 LYS B 44 5 3 HELIX 17 17 ASN B 45 GLU B 50 1 6 HELIX 18 18 GLY B 53 ARG B 57 1 5 HELIX 19 19 ASP B 67 ASN B 76 1 10 HELIX 20 20 ASP B 91 ALA B 113 1 23 HELIX 21 21 SER B 123 VAL B 127 5 5 HELIX 22 22 ASP B 146 THR B 153 1 8 HELIX 23 23 ASN B 155 GLY B 176 1 22 HELIX 24 24 ASN B 197 THR B 208 1 12 HELIX 25 25 VAL B 224 THR B 237 1 14 HELIX 26 26 ARG B 253 PHE B 264 1 12 HELIX 27 27 ASN B 288 LEU B 294 1 7 HELIX 28 28 PRO B 300 LYS B 315 1 16 SHEET 1 A 7 LEU A 58 LYS A 62 0 SHEET 2 A 7 THR A 32 VAL A 37 1 N GLY A 35 O CYS A 61 SHEET 3 A 7 VAL A 8 THR A 12 1 N VAL A 9 O ARG A 34 SHEET 4 A 7 GLY A 80 HIS A 83 1 O PHE A 82 N CYS A 10 SHEET 5 A 7 ARG A 117 THR A 121 1 O VAL A 119 N VAL A 81 SHEET 6 A 7 LEU A 179 PRO A 184 1 O VAL A 180 N PHE A 120 SHEET 7 A 7 GLY A 242 CYS A 246 1 O TYR A 244 N ASN A 183 SHEET 1 B 3 LEU A 186 GLN A 188 0 SHEET 2 B 3 VAL A 218 ASP A 223 1 O VAL A 222 N GLN A 188 SHEET 3 B 3 SER A 249 HIS A 252 -1 O LEU A 251 N GLN A 219 SHEET 1 C 7 LEU B 58 LYS B 62 0 SHEET 2 C 7 THR B 32 VAL B 37 1 N VAL B 33 O THR B 59 SHEET 3 C 7 VAL B 8 VAL B 11 1 N VAL B 9 O ARG B 34 SHEET 4 C 7 GLY B 80 HIS B 83 1 O PHE B 82 N CYS B 10 SHEET 5 C 7 ARG B 117 THR B 121 1 O VAL B 119 N VAL B 81 SHEET 6 C 7 LEU B 179 PRO B 184 1 O ILE B 182 N PHE B 120 SHEET 7 C 7 GLY B 242 CYS B 246 1 O TYR B 244 N ASN B 183 SHEET 1 D 3 LEU B 186 GLN B 188 0 SHEET 2 D 3 VAL B 218 ASP B 223 1 O VAL B 222 N GLN B 188 SHEET 3 D 3 SER B 249 HIS B 252 -1 O LEU B 251 N GLN B 219 SITE 1 AC1 37 GLY A 16 PHE A 17 ILE A 18 ARG A 38 SITE 2 AC1 37 LYS A 44 ASP A 64 LEU A 65 THR A 84 SITE 3 AC1 37 ALA A 85 SER A 86 PRO A 87 THR A 121 SITE 4 AC1 37 SER A 122 TYR A 157 LYS A 161 PRO A 184 SITE 5 AC1 37 VAL A 185 LEU A 186 VAL A 187 ASN A 197 SITE 6 AC1 37 SER A 199 HOH A 501 HOH A 504 HOH A 505 SITE 7 AC1 37 HOH A 507 HOH A 508 HOH A 510 HOH A 529 SITE 8 AC1 37 HOH A 538 HOH A 572 HOH A 579 HOH A 581 SITE 9 AC1 37 HOH A 615 HOH A 630 HOH A 655 HOH A 692 SITE 10 AC1 37 HOH A 706 SITE 1 AC2 34 GLY B 16 PHE B 17 ILE B 18 ARG B 38 SITE 2 AC2 34 LYS B 44 ASP B 64 LEU B 65 THR B 84 SITE 3 AC2 34 ALA B 85 SER B 86 PRO B 87 THR B 121 SITE 4 AC2 34 SER B 122 TYR B 157 LYS B 161 PRO B 184 SITE 5 AC2 34 VAL B 185 VAL B 187 SER B 199 HOH B 502 SITE 6 AC2 34 HOH B 503 HOH B 504 HOH B 507 HOH B 508 SITE 7 AC2 34 HOH B 512 HOH B 526 HOH B 547 HOH B 564 SITE 8 AC2 34 HOH B 570 HOH B 600 HOH B 606 HOH B 608 SITE 9 AC2 34 HOH B 644 HOH B 685 CRYST1 60.177 61.232 222.239 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016618 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004500 0.00000