HEADER HYDROLASE 09-AUG-14 4R27 TITLE CRYSTAL STRUCTURE OF BETA-GLYCOSIDASE BGL167 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-GLYCOSIDASE; COMPND 5 EC: 3.2.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROBACTERIUM SP. GSOIL167; SOURCE 3 ORGANISM_TAXID: 1271882; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.PARK,J.M.CHOI,H.H.KYEONG,S.G.KIM,H.S.KIM REVDAT 2 08-NOV-23 4R27 1 SEQADV REVDAT 1 27-MAY-15 4R27 0 JRNL AUTH S.J.PARK,J.M.CHOI,H.H.KYEONG,S.G.KIM,H.S.KIM JRNL TITL RATIONAL DESIGN OF A BETA-GLYCOSIDASE WITH HIGH JRNL TITL 2 REGIOSPECIFICITY FOR TRITERPENOID TAILORING JRNL REF CHEMBIOCHEM V. 16 854 2015 JRNL REFN ISSN 1439-4227 JRNL PMID 25703680 JRNL DOI 10.1002/CBIC.201500004 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 43165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2295 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3071 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6414 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.244 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.897 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6594 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6020 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8990 ; 1.849 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13781 ; 0.979 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 822 ; 7.715 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 332 ;31.761 ;23.193 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 949 ;15.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;18.927 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 942 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7701 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1651 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4R27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44261 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CMJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 36% MPD-PEG 1000-PEG 3350 MIXTURE, REMARK 280 55MM CALCIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.47000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 13 REMARK 465 PRO A 14 REMARK 465 MET A 15 REMARK 465 THR A 16 REMARK 465 LYS A 434 REMARK 465 LEU A 435 REMARK 465 ALA A 436 REMARK 465 ALA A 437 REMARK 465 ALA A 438 REMARK 465 LEU A 439 REMARK 465 GLU A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 THR B 13 REMARK 465 PRO B 14 REMARK 465 MET B 15 REMARK 465 THR B 16 REMARK 465 GLN B 424 REMARK 465 ALA B 425 REMARK 465 PRO B 426 REMARK 465 ALA B 427 REMARK 465 GLU B 428 REMARK 465 ALA B 429 REMARK 465 PRO B 430 REMARK 465 GLN B 431 REMARK 465 PRO B 432 REMARK 465 ALA B 433 REMARK 465 LYS B 434 REMARK 465 LEU B 435 REMARK 465 ALA B 436 REMARK 465 ALA B 437 REMARK 465 ALA B 438 REMARK 465 LEU B 439 REMARK 465 GLU B 440 REMARK 465 HIS B 441 REMARK 465 HIS B 442 REMARK 465 HIS B 443 REMARK 465 HIS B 444 REMARK 465 HIS B 445 REMARK 465 HIS B 446 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 304 CB - CA - C ANGL. DEV. = 13.6 DEGREES REMARK 500 PRO A 304 N - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 VAL A 309 CB - CA - C ANGL. DEV. = -25.0 DEGREES REMARK 500 ALA A 310 N - CA - CB ANGL. DEV. = 9.0 DEGREES REMARK 500 ALA A 310 N - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 VAL B 309 CB - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 ALA B 310 C - N - CA ANGL. DEV. = 18.1 DEGREES REMARK 500 ALA B 310 CB - CA - C ANGL. DEV. = 11.3 DEGREES REMARK 500 ALA B 310 N - CA - CB ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG B 403 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 403 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 61 -130.12 47.84 REMARK 500 PHE A 128 -53.87 64.54 REMARK 500 LEU A 160 11.31 -145.13 REMARK 500 GLU A 190 -1.29 -56.88 REMARK 500 ALA A 213 76.79 -153.00 REMARK 500 VAL A 309 4.59 107.08 REMARK 500 ASN A 312 -174.58 -65.16 REMARK 500 ASN A 343 134.06 -174.80 REMARK 500 TRP A 388 -126.05 43.57 REMARK 500 ASN B 38 54.55 -90.82 REMARK 500 ALA B 61 -125.55 50.84 REMARK 500 PHE B 128 -50.57 73.04 REMARK 500 LEU B 160 9.84 -152.09 REMARK 500 PRO B 260 123.36 -37.46 REMARK 500 TYR B 292 -37.60 -130.53 REMARK 500 VAL B 309 -152.13 73.20 REMARK 500 ALA B 310 -72.70 -74.10 REMARK 500 TRP B 388 -124.37 42.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 304 ALA A 305 -144.72 REMARK 500 PRO A 306 GLU A 307 -142.66 REMARK 500 GLY A 308 VAL A 309 136.85 REMARK 500 VAL A 311 ASN A 312 144.83 REMARK 500 VAL B 309 ALA B 310 -83.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 4R27 A 13 433 UNP L0ELG0 L0ELG0_9MICO 5 425 DBREF 4R27 B 13 433 UNP L0ELG0 L0ELG0_9MICO 5 425 SEQADV 4R27 LYS A 434 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 LEU A 435 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 ALA A 436 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 ALA A 437 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 ALA A 438 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 LEU A 439 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 GLU A 440 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS A 441 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS A 442 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS A 443 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS A 444 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS A 445 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS A 446 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 LYS B 434 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 LEU B 435 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 ALA B 436 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 ALA B 437 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 ALA B 438 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 LEU B 439 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 GLU B 440 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS B 441 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS B 442 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS B 443 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS B 444 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS B 445 UNP L0ELG0 EXPRESSION TAG SEQADV 4R27 HIS B 446 UNP L0ELG0 EXPRESSION TAG SEQRES 1 A 434 THR PRO MET THR ASN PRO PHE PRO GLN ASP PHE LEU TRP SEQRES 2 A 434 GLY VAL ALA THR ALA GLY HIS GLN VAL GLU GLY ASN ASN SEQRES 3 A 434 VAL ASN SER ASP VAL TRP PHE LEU GLU HIS LEU PRO GLY SEQRES 4 A 434 THR ILE PHE ALA GLU PRO SER GLY ASP ALA VAL ASP HIS SEQRES 5 A 434 TYR HIS ARG TYR ARG GLU ASP ILE ALA LEU ILE ALA GLY SEQRES 6 A 434 LEU GLY PHE THR SER TYR ARG PHE SER VAL GLU TRP ALA SEQRES 7 A 434 ARG ILE GLU PRO GLU GLU GLY HIS PHE SER VAL ALA ALA SEQRES 8 A 434 LEU ASP HIS TYR LYS ARG VAL LEU GLU ALA CYS ARG GLU SEQRES 9 A 434 HIS GLY LEU THR PRO VAL VAL THR PHE HIS HIS PHE ALA SEQRES 10 A 434 SER PRO LEU TRP LEU LEU ARG SER GLY GLY TRP GLU GLY SEQRES 11 A 434 GLU ARG THR PRO GLU LEU PHE ALA ARG TYR CYS GLY ARG SEQRES 12 A 434 VAL MET ALA HIS LEU GLY ASP LEU ILE GLY VAL ALA CYS SEQRES 13 A 434 THR LEU ASN GLU PRO ASN LEU PRO TRP LEU LEU GLU SER SEQRES 14 A 434 PHE GLY ILE GLY GLY GLU ALA PRO GLU ASN ARG GLY LYS SEQRES 15 A 434 VAL PRO MET TRP ALA ALA ALA ALA GLN ARG LEU GLY VAL SEQRES 16 A 434 ASP ALA SER THR VAL ALA PRO PHE GLN PHE CYS SER THR SEQRES 17 A 434 GLU ALA GLY PHE ASN VAL LYS LEU ALA ALA HIS LYS ALA SEQRES 18 A 434 ALA THR GLU ALA ILE LYS ALA HIS ARG PRO ASP LEU ARG SEQRES 19 A 434 VAL GLY TRP THR LEU ALA ASN SER ASP ILE GLN SER VAL SEQRES 20 A 434 PRO GLY GLY GLU GLU ILE ALA ALA GLN VAL ARG ARG ASP SEQRES 21 A 434 VAL ASN GLU ARG PHE LEU GLU ALA SER ARG GLY ASP ASP SEQRES 22 A 434 PHE VAL GLY ILE GLN THR TYR GLY ARG THR VAL TYR GLY SEQRES 23 A 434 PRO ASP GLY HIS ALA PRO ALA PRO GLU GLY VAL ALA VAL SEQRES 24 A 434 ASN GLN MET GLY GLU GLU ILE TYR PRO GLN ALA LEU GLU SEQRES 25 A 434 ALA THR ILE ARG GLU ALA TRP ARG VAL ALA GLY ILE PRO SEQRES 26 A 434 VAL MET VAL THR GLU ASN GLY LEU ALA THR GLU ASP ASP SEQRES 27 A 434 THR GLN ARG VAL ALA TYR LEU ARG THR ALA VAL ASP GLY SEQRES 28 A 434 VAL ALA SER CYS LEU ALA ASP GLY ILE ASP VAL ARG GLY SEQRES 29 A 434 TYR ILE ALA TRP THR ALA PHE ASP ASN PHE GLU TRP ILE SEQRES 30 A 434 PHE GLY TYR GLY PRO LYS PHE GLY LEU ILE ALA VAL ASP SEQRES 31 A 434 ARG SER THR GLN GLU ARG THR PRO LYS GLU SER ALA ARG SEQRES 32 A 434 TRP LEU GLY ASN PHE ALA ARG GLN GLN ALA PRO ALA GLU SEQRES 33 A 434 ALA PRO GLN PRO ALA LYS LEU ALA ALA ALA LEU GLU HIS SEQRES 34 A 434 HIS HIS HIS HIS HIS SEQRES 1 B 434 THR PRO MET THR ASN PRO PHE PRO GLN ASP PHE LEU TRP SEQRES 2 B 434 GLY VAL ALA THR ALA GLY HIS GLN VAL GLU GLY ASN ASN SEQRES 3 B 434 VAL ASN SER ASP VAL TRP PHE LEU GLU HIS LEU PRO GLY SEQRES 4 B 434 THR ILE PHE ALA GLU PRO SER GLY ASP ALA VAL ASP HIS SEQRES 5 B 434 TYR HIS ARG TYR ARG GLU ASP ILE ALA LEU ILE ALA GLY SEQRES 6 B 434 LEU GLY PHE THR SER TYR ARG PHE SER VAL GLU TRP ALA SEQRES 7 B 434 ARG ILE GLU PRO GLU GLU GLY HIS PHE SER VAL ALA ALA SEQRES 8 B 434 LEU ASP HIS TYR LYS ARG VAL LEU GLU ALA CYS ARG GLU SEQRES 9 B 434 HIS GLY LEU THR PRO VAL VAL THR PHE HIS HIS PHE ALA SEQRES 10 B 434 SER PRO LEU TRP LEU LEU ARG SER GLY GLY TRP GLU GLY SEQRES 11 B 434 GLU ARG THR PRO GLU LEU PHE ALA ARG TYR CYS GLY ARG SEQRES 12 B 434 VAL MET ALA HIS LEU GLY ASP LEU ILE GLY VAL ALA CYS SEQRES 13 B 434 THR LEU ASN GLU PRO ASN LEU PRO TRP LEU LEU GLU SER SEQRES 14 B 434 PHE GLY ILE GLY GLY GLU ALA PRO GLU ASN ARG GLY LYS SEQRES 15 B 434 VAL PRO MET TRP ALA ALA ALA ALA GLN ARG LEU GLY VAL SEQRES 16 B 434 ASP ALA SER THR VAL ALA PRO PHE GLN PHE CYS SER THR SEQRES 17 B 434 GLU ALA GLY PHE ASN VAL LYS LEU ALA ALA HIS LYS ALA SEQRES 18 B 434 ALA THR GLU ALA ILE LYS ALA HIS ARG PRO ASP LEU ARG SEQRES 19 B 434 VAL GLY TRP THR LEU ALA ASN SER ASP ILE GLN SER VAL SEQRES 20 B 434 PRO GLY GLY GLU GLU ILE ALA ALA GLN VAL ARG ARG ASP SEQRES 21 B 434 VAL ASN GLU ARG PHE LEU GLU ALA SER ARG GLY ASP ASP SEQRES 22 B 434 PHE VAL GLY ILE GLN THR TYR GLY ARG THR VAL TYR GLY SEQRES 23 B 434 PRO ASP GLY HIS ALA PRO ALA PRO GLU GLY VAL ALA VAL SEQRES 24 B 434 ASN GLN MET GLY GLU GLU ILE TYR PRO GLN ALA LEU GLU SEQRES 25 B 434 ALA THR ILE ARG GLU ALA TRP ARG VAL ALA GLY ILE PRO SEQRES 26 B 434 VAL MET VAL THR GLU ASN GLY LEU ALA THR GLU ASP ASP SEQRES 27 B 434 THR GLN ARG VAL ALA TYR LEU ARG THR ALA VAL ASP GLY SEQRES 28 B 434 VAL ALA SER CYS LEU ALA ASP GLY ILE ASP VAL ARG GLY SEQRES 29 B 434 TYR ILE ALA TRP THR ALA PHE ASP ASN PHE GLU TRP ILE SEQRES 30 B 434 PHE GLY TYR GLY PRO LYS PHE GLY LEU ILE ALA VAL ASP SEQRES 31 B 434 ARG SER THR GLN GLU ARG THR PRO LYS GLU SER ALA ARG SEQRES 32 B 434 TRP LEU GLY ASN PHE ALA ARG GLN GLN ALA PRO ALA GLU SEQRES 33 B 434 ALA PRO GLN PRO ALA LYS LEU ALA ALA ALA LEU GLU HIS SEQRES 34 B 434 HIS HIS HIS HIS HIS FORMUL 3 HOH *68(H2 O) HELIX 1 1 ALA A 30 GLU A 35 1 6 HELIX 2 2 SER A 41 HIS A 48 1 8 HELIX 3 3 ASP A 63 LEU A 78 1 16 HELIX 4 4 GLU A 88 GLU A 93 1 6 HELIX 5 5 SER A 100 HIS A 117 1 18 HELIX 6 6 PRO A 131 SER A 137 5 7 HELIX 7 7 GLY A 138 GLY A 142 5 5 HELIX 8 8 ARG A 144 GLY A 161 1 18 HELIX 9 9 ASP A 162 ILE A 164 5 3 HELIX 10 10 ASN A 174 SER A 181 1 8 HELIX 11 11 ALA A 188 LYS A 194 5 7 HELIX 12 12 VAL A 195 GLY A 206 1 12 HELIX 13 13 ASP A 208 VAL A 212 5 5 HELIX 14 14 PRO A 214 CYS A 218 5 5 HELIX 15 15 THR A 220 ARG A 242 1 23 HELIX 16 16 GLY A 262 ASN A 274 1 13 HELIX 17 17 ASN A 274 SER A 281 1 8 HELIX 18 18 GLN A 321 GLY A 335 1 15 HELIX 19 19 ASP A 349 ASP A 370 1 22 HELIX 20 20 GLU A 387 GLY A 391 5 5 HELIX 21 21 LYS A 411 GLN A 423 1 13 HELIX 22 22 ALA B 30 GLU B 35 1 6 HELIX 23 23 SER B 41 HIS B 48 1 8 HELIX 24 24 ASP B 63 GLY B 79 1 17 HELIX 25 25 GLU B 88 GLU B 93 1 6 HELIX 26 26 SER B 100 HIS B 117 1 18 HELIX 27 27 PRO B 131 SER B 137 1 7 HELIX 28 28 GLY B 138 GLY B 142 5 5 HELIX 29 29 ARG B 144 GLY B 161 1 18 HELIX 30 30 ASP B 162 ILE B 164 5 3 HELIX 31 31 ASN B 174 SER B 181 1 8 HELIX 32 32 ALA B 188 LYS B 194 5 7 HELIX 33 33 VAL B 195 GLY B 206 1 12 HELIX 34 34 ASP B 208 VAL B 212 5 5 HELIX 35 35 PRO B 214 CYS B 218 5 5 HELIX 36 36 THR B 220 ARG B 242 1 23 HELIX 37 37 GLY B 262 ASN B 274 1 13 HELIX 38 38 ASN B 274 ALA B 280 1 7 HELIX 39 39 GLN B 321 ALA B 334 1 14 HELIX 40 40 ASP B 349 ASP B 370 1 22 HELIX 41 41 GLU B 387 GLY B 391 5 5 HELIX 42 42 LYS B 411 GLN B 423 1 13 SHEET 1 A 9 LEU A 24 ALA A 28 0 SHEET 2 A 9 SER A 82 SER A 86 1 O ARG A 84 N VAL A 27 SHEET 3 A 9 THR A 120 HIS A 126 1 O VAL A 122 N TYR A 83 SHEET 4 A 9 VAL A 166 ASN A 171 1 O CYS A 168 N PHE A 125 SHEET 5 A 9 VAL A 247 ALA A 252 1 O THR A 250 N LEU A 170 SHEET 6 A 9 VAL A 287 GLN A 290 1 O GLY A 288 N TRP A 249 SHEET 7 A 9 VAL A 338 GLU A 342 1 O MET A 339 N ILE A 289 SHEET 8 A 9 VAL A 374 TRP A 380 1 O ARG A 375 N VAL A 338 SHEET 9 A 9 LEU A 24 ALA A 28 1 N LEU A 24 O TYR A 377 SHEET 1 B 3 ASP A 255 SER A 258 0 SHEET 2 B 3 ARG A 294 GLY A 298 1 O THR A 295 N GLN A 257 SHEET 3 B 3 GLY A 301 HIS A 302 -1 O GLY A 301 N GLY A 298 SHEET 1 C 2 ILE A 399 VAL A 401 0 SHEET 2 C 2 ARG A 408 PRO A 410 -1 O THR A 409 N ALA A 400 SHEET 1 D 9 LEU B 24 ALA B 28 0 SHEET 2 D 9 SER B 82 SER B 86 1 O ARG B 84 N VAL B 27 SHEET 3 D 9 THR B 120 HIS B 126 1 O VAL B 122 N TYR B 83 SHEET 4 D 9 VAL B 166 ASN B 171 1 O CYS B 168 N VAL B 123 SHEET 5 D 9 VAL B 247 ALA B 252 1 O GLY B 248 N THR B 169 SHEET 6 D 9 VAL B 287 GLN B 290 1 O GLY B 288 N TRP B 249 SHEET 7 D 9 VAL B 338 ASN B 343 1 O MET B 339 N ILE B 289 SHEET 8 D 9 VAL B 374 TRP B 380 1 O ARG B 375 N VAL B 338 SHEET 9 D 9 LEU B 24 ALA B 28 1 N LEU B 24 O TYR B 377 SHEET 1 E 3 ASP B 255 SER B 258 0 SHEET 2 E 3 ARG B 294 GLY B 298 1 O THR B 295 N GLN B 257 SHEET 3 E 3 GLY B 301 HIS B 302 -1 O GLY B 301 N GLY B 298 SHEET 1 F 2 ILE B 399 ASP B 402 0 SHEET 2 F 2 GLU B 407 PRO B 410 -1 O THR B 409 N ALA B 400 CISPEP 1 PHE A 182 GLY A 183 0 -22.22 CISPEP 2 ALA A 310 VAL A 311 0 -22.68 CISPEP 3 TRP A 380 THR A 381 0 -3.65 CISPEP 4 ALA B 310 VAL B 311 0 17.86 CISPEP 5 TRP B 380 THR B 381 0 6.62 CRYST1 48.498 146.940 53.041 90.00 101.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020619 0.000000 0.004379 0.00000 SCALE2 0.000000 0.006805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019274 0.00000