HEADER TRANSFERASE 11-AUG-14 4R29 TITLE CRYSTAL STRUCTURE OF BACTERIAL CYSTEINE METHYLTRANSFERASE EFFECTOR TITLE 2 NLEE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CYSTEINE METHYLTRANSFERASE, NLEE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: ECS3858, Z4329; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN-LIKE FOLD, NF-KAPPAB INHIBITION, TAB2 AND TAB3, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.YAO,J.CHEN,L.HU,L.ZHANG,F.SHAO REVDAT 3 20-MAR-24 4R29 1 REMARK SEQADV REVDAT 2 22-NOV-17 4R29 1 REMARK REVDAT 1 03-DEC-14 4R29 0 JRNL AUTH Q.YAO,L.ZHANG,X.WAN,J.CHEN,L.HU,X.DING,L.LI,J.KARAR,H.PENG, JRNL AUTH 2 S.CHEN,N.HUANG,F.J.RAUSCHER,F.SHAO JRNL TITL STRUCTURE AND SPECIFICITY OF THE BACTERIAL CYSTEINE JRNL TITL 2 METHYLTRANSFERASE EFFECTOR NLEE SUGGESTS A NOVEL SUBSTRATE JRNL TITL 3 IN HUMAN DNA REPAIR PATHWAY. JRNL REF PLOS PATHOG. V. 10 04522 2014 JRNL REFN ISSN 1553-7366 JRNL PMID 25412445 JRNL DOI 10.1371/JOURNAL.PPAT.1004522 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.3_473) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 41197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.0209 - 4.9546 0.99 4171 207 0.2111 0.2355 REMARK 3 2 4.9546 - 3.9424 0.99 4101 205 0.1658 0.1853 REMARK 3 3 3.9424 - 3.4470 0.99 4028 198 0.1816 0.2060 REMARK 3 4 3.4470 - 3.1331 0.99 3996 196 0.1965 0.2417 REMARK 3 5 3.1331 - 2.9093 0.98 4015 201 0.2138 0.2525 REMARK 3 6 2.9093 - 2.7382 0.97 3925 193 0.2062 0.2537 REMARK 3 7 2.7382 - 2.6014 0.96 3860 190 0.2129 0.2703 REMARK 3 8 2.6014 - 2.4883 0.95 3873 190 0.2149 0.2720 REMARK 3 9 2.4883 - 2.3927 0.94 3779 188 0.2154 0.2805 REMARK 3 10 2.3927 - 2.3103 0.86 3506 175 0.2247 0.2920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 46.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98600 REMARK 3 B22 (A**2) : 3.95010 REMARK 3 B33 (A**2) : -2.96410 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.43490 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6895 REMARK 3 ANGLE : 1.108 9310 REMARK 3 CHIRALITY : 0.075 975 REMARK 3 PLANARITY : 0.005 1195 REMARK 3 DIHEDRAL : 18.329 2677 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 57.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.15200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.98800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.15200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.98800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ASN A 3 REMARK 465 PRO A 4 REMARK 465 VAL A 5 REMARK 465 THR A 6 REMARK 465 ASN A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 10 REMARK 465 VAL A 11 REMARK 465 SER A 12 REMARK 465 PRO A 13 REMARK 465 ILE A 14 REMARK 465 ASN A 15 REMARK 465 THR A 16 REMARK 465 LYS A 17 REMARK 465 TYR A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 GLY A 53 REMARK 465 SER A 221 REMARK 465 LYS A 222 REMARK 465 ILE A 223 REMARK 465 GLU A 224 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 ASN B 3 REMARK 465 PRO B 4 REMARK 465 VAL B 5 REMARK 465 THR B 6 REMARK 465 ASN B 7 REMARK 465 THR B 8 REMARK 465 GLN B 9 REMARK 465 GLY B 10 REMARK 465 VAL B 11 REMARK 465 SER B 12 REMARK 465 PRO B 13 REMARK 465 ILE B 14 REMARK 465 ASN B 15 REMARK 465 THR B 16 REMARK 465 LEU B 220 REMARK 465 SER B 221 REMARK 465 LYS B 222 REMARK 465 ILE B 223 REMARK 465 GLU B 224 REMARK 465 MET C 1 REMARK 465 ILE C 2 REMARK 465 ASN C 3 REMARK 465 PRO C 4 REMARK 465 VAL C 5 REMARK 465 THR C 6 REMARK 465 ASN C 7 REMARK 465 THR C 8 REMARK 465 GLN C 9 REMARK 465 GLY C 10 REMARK 465 VAL C 11 REMARK 465 SER C 12 REMARK 465 PRO C 13 REMARK 465 ILE C 14 REMARK 465 ASN C 15 REMARK 465 THR C 16 REMARK 465 LYS C 17 REMARK 465 TYR C 18 REMARK 465 ALA C 19 REMARK 465 GLU C 20 REMARK 465 TYR C 180 REMARK 465 MET D 1 REMARK 465 ILE D 2 REMARK 465 ASN D 3 REMARK 465 PRO D 4 REMARK 465 VAL D 5 REMARK 465 THR D 6 REMARK 465 ASN D 7 REMARK 465 THR D 8 REMARK 465 GLN D 9 REMARK 465 GLY D 10 REMARK 465 VAL D 11 REMARK 465 SER D 12 REMARK 465 PRO D 13 REMARK 465 ILE D 14 REMARK 465 ASN D 15 REMARK 465 THR D 16 REMARK 465 LYS D 17 REMARK 465 TYR D 18 REMARK 465 ALA D 19 REMARK 465 GLU D 20 REMARK 465 GLU D 139 REMARK 465 SER D 221 REMARK 465 LYS D 222 REMARK 465 ILE D 223 REMARK 465 GLU D 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 32 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 219 CG CD CE NZ REMARK 470 GLU C 184 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 43 NH2 ARG A 52 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 29 26.95 -79.34 REMARK 500 THR A 51 -132.29 -107.33 REMARK 500 PHE A 62 -71.18 -98.78 REMARK 500 LEU A 182 80.79 -171.70 REMARK 500 PHE B 62 -64.93 -108.29 REMARK 500 LEU B 182 71.04 -158.05 REMARK 500 PHE C 62 -67.07 -108.35 REMARK 500 ARG C 89 -38.04 -39.29 REMARK 500 LEU C 117 0.59 -68.90 REMARK 500 LEU C 182 67.52 -155.39 REMARK 500 GLU C 184 108.75 -58.14 REMARK 500 ILE C 223 65.07 -151.93 REMARK 500 LEU D 117 0.32 -68.72 REMARK 500 PHE D 143 -50.26 -125.13 REMARK 500 GLU D 184 107.82 -58.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 302 DBREF 4R29 A 1 224 UNP Q7DBA6 Q7DBA6_ECO57 1 224 DBREF 4R29 B 1 224 UNP Q7DBA6 Q7DBA6_ECO57 1 224 DBREF 4R29 C 1 224 UNP Q7DBA6 Q7DBA6_ECO57 1 224 DBREF 4R29 D 1 224 UNP Q7DBA6 Q7DBA6_ECO57 1 224 SEQADV 4R29 ALA A 181 UNP Q7DBA6 GLU 181 ENGINEERED MUTATION SEQADV 4R29 ALA B 181 UNP Q7DBA6 GLU 181 ENGINEERED MUTATION SEQADV 4R29 ALA C 181 UNP Q7DBA6 GLU 181 ENGINEERED MUTATION SEQADV 4R29 ALA D 181 UNP Q7DBA6 GLU 181 ENGINEERED MUTATION SEQRES 1 A 224 MET ILE ASN PRO VAL THR ASN THR GLN GLY VAL SER PRO SEQRES 2 A 224 ILE ASN THR LYS TYR ALA GLU HIS VAL VAL LYS ASN ILE SEQRES 3 A 224 TYR PRO GLU ILE LYS HIS ASP TYR PHE ASN GLU SER PRO SEQRES 4 A 224 ASN ILE TYR ASP LYS LYS TYR ILE SER GLY ILE THR ARG SEQRES 5 A 224 GLY VAL ALA GLU LEU LYS GLN GLU GLU PHE VAL ASN GLU SEQRES 6 A 224 LYS ALA ARG ARG PHE SER TYR MET LYS THR MET TYR SER SEQRES 7 A 224 VAL CYS PRO GLU ALA PHE GLU PRO ILE SER ARG ASN GLU SEQRES 8 A 224 ALA SER THR PRO GLU GLY SER TRP LEU THR VAL ILE SER SEQRES 9 A 224 GLY LYS ARG PRO MET GLY GLN PHE SER VAL ASP SER LEU SEQRES 10 A 224 TYR ASN PRO ASP LEU HIS ALA LEU CYS GLU LEU PRO ASP SEQRES 11 A 224 ILE CYS CYS LYS ILE PHE PRO LYS GLU ASN ASN ASP PHE SEQRES 12 A 224 LEU TYR ILE VAL VAL VAL TYR ARG ASN ASP SER PRO LEU SEQRES 13 A 224 GLY GLU GLN ARG ALA ASN ARG PHE ILE GLU LEU TYR ASN SEQRES 14 A 224 ILE LYS ARG ASP ILE MET GLN GLU LEU ASN TYR ALA LEU SEQRES 15 A 224 PRO GLU LEU LYS ALA VAL LYS SER GLU MET ILE ILE ALA SEQRES 16 A 224 ARG GLU MET GLY GLU ILE PHE SER TYR MET PRO GLY GLU SEQRES 17 A 224 ILE ASP SER TYR MET LYS TYR ILE ASN ASN LYS LEU SER SEQRES 18 A 224 LYS ILE GLU SEQRES 1 B 224 MET ILE ASN PRO VAL THR ASN THR GLN GLY VAL SER PRO SEQRES 2 B 224 ILE ASN THR LYS TYR ALA GLU HIS VAL VAL LYS ASN ILE SEQRES 3 B 224 TYR PRO GLU ILE LYS HIS ASP TYR PHE ASN GLU SER PRO SEQRES 4 B 224 ASN ILE TYR ASP LYS LYS TYR ILE SER GLY ILE THR ARG SEQRES 5 B 224 GLY VAL ALA GLU LEU LYS GLN GLU GLU PHE VAL ASN GLU SEQRES 6 B 224 LYS ALA ARG ARG PHE SER TYR MET LYS THR MET TYR SER SEQRES 7 B 224 VAL CYS PRO GLU ALA PHE GLU PRO ILE SER ARG ASN GLU SEQRES 8 B 224 ALA SER THR PRO GLU GLY SER TRP LEU THR VAL ILE SER SEQRES 9 B 224 GLY LYS ARG PRO MET GLY GLN PHE SER VAL ASP SER LEU SEQRES 10 B 224 TYR ASN PRO ASP LEU HIS ALA LEU CYS GLU LEU PRO ASP SEQRES 11 B 224 ILE CYS CYS LYS ILE PHE PRO LYS GLU ASN ASN ASP PHE SEQRES 12 B 224 LEU TYR ILE VAL VAL VAL TYR ARG ASN ASP SER PRO LEU SEQRES 13 B 224 GLY GLU GLN ARG ALA ASN ARG PHE ILE GLU LEU TYR ASN SEQRES 14 B 224 ILE LYS ARG ASP ILE MET GLN GLU LEU ASN TYR ALA LEU SEQRES 15 B 224 PRO GLU LEU LYS ALA VAL LYS SER GLU MET ILE ILE ALA SEQRES 16 B 224 ARG GLU MET GLY GLU ILE PHE SER TYR MET PRO GLY GLU SEQRES 17 B 224 ILE ASP SER TYR MET LYS TYR ILE ASN ASN LYS LEU SER SEQRES 18 B 224 LYS ILE GLU SEQRES 1 C 224 MET ILE ASN PRO VAL THR ASN THR GLN GLY VAL SER PRO SEQRES 2 C 224 ILE ASN THR LYS TYR ALA GLU HIS VAL VAL LYS ASN ILE SEQRES 3 C 224 TYR PRO GLU ILE LYS HIS ASP TYR PHE ASN GLU SER PRO SEQRES 4 C 224 ASN ILE TYR ASP LYS LYS TYR ILE SER GLY ILE THR ARG SEQRES 5 C 224 GLY VAL ALA GLU LEU LYS GLN GLU GLU PHE VAL ASN GLU SEQRES 6 C 224 LYS ALA ARG ARG PHE SER TYR MET LYS THR MET TYR SER SEQRES 7 C 224 VAL CYS PRO GLU ALA PHE GLU PRO ILE SER ARG ASN GLU SEQRES 8 C 224 ALA SER THR PRO GLU GLY SER TRP LEU THR VAL ILE SER SEQRES 9 C 224 GLY LYS ARG PRO MET GLY GLN PHE SER VAL ASP SER LEU SEQRES 10 C 224 TYR ASN PRO ASP LEU HIS ALA LEU CYS GLU LEU PRO ASP SEQRES 11 C 224 ILE CYS CYS LYS ILE PHE PRO LYS GLU ASN ASN ASP PHE SEQRES 12 C 224 LEU TYR ILE VAL VAL VAL TYR ARG ASN ASP SER PRO LEU SEQRES 13 C 224 GLY GLU GLN ARG ALA ASN ARG PHE ILE GLU LEU TYR ASN SEQRES 14 C 224 ILE LYS ARG ASP ILE MET GLN GLU LEU ASN TYR ALA LEU SEQRES 15 C 224 PRO GLU LEU LYS ALA VAL LYS SER GLU MET ILE ILE ALA SEQRES 16 C 224 ARG GLU MET GLY GLU ILE PHE SER TYR MET PRO GLY GLU SEQRES 17 C 224 ILE ASP SER TYR MET LYS TYR ILE ASN ASN LYS LEU SER SEQRES 18 C 224 LYS ILE GLU SEQRES 1 D 224 MET ILE ASN PRO VAL THR ASN THR GLN GLY VAL SER PRO SEQRES 2 D 224 ILE ASN THR LYS TYR ALA GLU HIS VAL VAL LYS ASN ILE SEQRES 3 D 224 TYR PRO GLU ILE LYS HIS ASP TYR PHE ASN GLU SER PRO SEQRES 4 D 224 ASN ILE TYR ASP LYS LYS TYR ILE SER GLY ILE THR ARG SEQRES 5 D 224 GLY VAL ALA GLU LEU LYS GLN GLU GLU PHE VAL ASN GLU SEQRES 6 D 224 LYS ALA ARG ARG PHE SER TYR MET LYS THR MET TYR SER SEQRES 7 D 224 VAL CYS PRO GLU ALA PHE GLU PRO ILE SER ARG ASN GLU SEQRES 8 D 224 ALA SER THR PRO GLU GLY SER TRP LEU THR VAL ILE SER SEQRES 9 D 224 GLY LYS ARG PRO MET GLY GLN PHE SER VAL ASP SER LEU SEQRES 10 D 224 TYR ASN PRO ASP LEU HIS ALA LEU CYS GLU LEU PRO ASP SEQRES 11 D 224 ILE CYS CYS LYS ILE PHE PRO LYS GLU ASN ASN ASP PHE SEQRES 12 D 224 LEU TYR ILE VAL VAL VAL TYR ARG ASN ASP SER PRO LEU SEQRES 13 D 224 GLY GLU GLN ARG ALA ASN ARG PHE ILE GLU LEU TYR ASN SEQRES 14 D 224 ILE LYS ARG ASP ILE MET GLN GLU LEU ASN TYR ALA LEU SEQRES 15 D 224 PRO GLU LEU LYS ALA VAL LYS SER GLU MET ILE ILE ALA SEQRES 16 D 224 ARG GLU MET GLY GLU ILE PHE SER TYR MET PRO GLY GLU SEQRES 17 D 224 ILE ASP SER TYR MET LYS TYR ILE ASN ASN LYS LEU SER SEQRES 18 D 224 LYS ILE GLU HET SAM A 301 27 HET GOL A 302 6 HET SAM B 301 27 HET CIT B 302 13 HET SAM C 301 27 HET CIT C 302 13 HET GOL C 303 6 HET SAM D 301 27 HET GOL D 302 6 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM GOL GLYCEROL HETNAM CIT CITRIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SAM 4(C15 H22 N6 O5 S) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 8 CIT 2(C6 H8 O7) FORMUL 14 HOH *295(H2 O) HELIX 1 1 HIS A 21 TYR A 27 1 7 HELIX 2 2 LYS A 31 ASN A 36 5 6 HELIX 3 3 TYR A 42 LYS A 45 5 4 HELIX 4 4 PHE A 62 TYR A 77 1 16 HELIX 5 5 SER A 88 SER A 93 5 6 HELIX 6 6 THR A 94 SER A 104 1 11 HELIX 7 7 ASN A 119 CYS A 126 1 8 HELIX 8 8 PRO A 155 LEU A 182 1 28 HELIX 9 9 LEU A 185 PHE A 202 1 18 HELIX 10 10 MET A 205 LEU A 220 1 16 HELIX 11 11 TYR B 18 TYR B 27 1 10 HELIX 12 12 LYS B 31 GLU B 37 5 7 HELIX 13 13 TYR B 42 LYS B 45 5 4 HELIX 14 14 PHE B 62 TYR B 77 1 16 HELIX 15 15 SER B 88 SER B 93 5 6 HELIX 16 16 THR B 94 SER B 104 1 11 HELIX 17 17 ASN B 119 CYS B 126 1 8 HELIX 18 18 LEU B 156 LEU B 182 1 27 HELIX 19 19 LEU B 185 PHE B 202 1 18 HELIX 20 20 MET B 205 LYS B 219 1 15 HELIX 21 21 VAL C 22 TYR C 27 1 6 HELIX 22 22 HIS C 32 GLU C 37 1 6 HELIX 23 23 TYR C 42 LYS C 45 5 4 HELIX 24 24 PHE C 62 TYR C 77 1 16 HELIX 25 25 SER C 88 SER C 93 5 6 HELIX 26 26 THR C 94 SER C 104 1 11 HELIX 27 27 ASN C 119 CYS C 126 1 8 HELIX 28 28 SER C 154 ASN C 179 1 26 HELIX 29 29 LEU C 185 PHE C 202 1 18 HELIX 30 30 MET C 205 SER C 221 1 17 HELIX 31 31 VAL D 22 TYR D 27 1 6 HELIX 32 32 HIS D 32 GLU D 37 1 6 HELIX 33 33 TYR D 42 LYS D 45 5 4 HELIX 34 34 PHE D 62 TYR D 77 1 16 HELIX 35 35 SER D 88 SER D 93 5 6 HELIX 36 36 THR D 94 SER D 104 1 11 HELIX 37 37 ASN D 119 CYS D 126 1 8 HELIX 38 38 SER D 154 LEU D 182 1 29 HELIX 39 39 LEU D 185 PHE D 202 1 18 HELIX 40 40 MET D 205 ASN D 218 1 14 SHEET 1 A 2 ILE A 47 SER A 48 0 SHEET 2 A 2 GLU A 56 LEU A 57 -1 O GLU A 56 N SER A 48 SHEET 1 B 3 MET A 109 VAL A 114 0 SHEET 2 B 3 TYR A 145 ARG A 151 -1 O VAL A 147 N PHE A 112 SHEET 3 B 3 ILE A 131 PRO A 137 -1 N PHE A 136 O ILE A 146 SHEET 1 C 2 ILE B 47 SER B 48 0 SHEET 2 C 2 GLU B 56 LEU B 57 -1 O GLU B 56 N SER B 48 SHEET 1 D 3 MET B 109 VAL B 114 0 SHEET 2 D 3 TYR B 145 ARG B 151 -1 O VAL B 147 N PHE B 112 SHEET 3 D 3 ILE B 131 PRO B 137 -1 N LYS B 134 O VAL B 148 SHEET 1 E 2 ILE C 47 SER C 48 0 SHEET 2 E 2 GLU C 56 LEU C 57 -1 O GLU C 56 N SER C 48 SHEET 1 F 3 MET C 109 VAL C 114 0 SHEET 2 F 3 TYR C 145 ARG C 151 -1 O VAL C 147 N PHE C 112 SHEET 3 F 3 ILE C 131 PRO C 137 -1 N PHE C 136 O ILE C 146 SHEET 1 G 2 ILE D 47 SER D 48 0 SHEET 2 G 2 GLU D 56 LEU D 57 -1 O GLU D 56 N SER D 48 SHEET 1 H 3 MET D 109 VAL D 114 0 SHEET 2 H 3 TYR D 145 ARG D 151 -1 O VAL D 147 N PHE D 112 SHEET 3 H 3 ILE D 131 PRO D 137 -1 N PHE D 136 O ILE D 146 CISPEP 1 ILE C 223 GLU C 224 0 -7.14 CISPEP 2 ASN D 218 LYS D 219 0 17.04 SITE 1 AC1 17 ARG A 89 ALA A 92 SER A 98 ARG A 107 SITE 2 AC1 17 GLY A 110 GLN A 111 GLU A 191 ALA A 195 SITE 3 AC1 17 MET A 198 GLY A 199 PHE A 202 TYR A 204 SITE 4 AC1 17 GLU A 208 TYR A 212 GOL A 302 HOH A 406 SITE 5 AC1 17 HOH A 425 SITE 1 AC2 7 ARG A 89 SER A 93 PRO A 95 GLN A 111 SITE 2 AC2 7 PHE A 112 SER A 113 SAM A 301 SITE 1 AC3 16 ASN A 179 ARG B 89 ALA B 92 SER B 98 SITE 2 AC3 16 ARG B 107 GLY B 110 GLN B 111 GLU B 191 SITE 3 AC3 16 ALA B 195 MET B 198 GLY B 199 PHE B 202 SITE 4 AC3 16 TYR B 204 GLU B 208 TYR B 212 CIT B 302 SITE 1 AC4 8 ARG B 89 ALA B 92 SER B 93 PRO B 95 SITE 2 AC4 8 GLN B 111 PHE B 112 SER B 113 SAM B 301 SITE 1 AC5 17 ARG C 89 ALA C 92 SER C 98 ARG C 107 SITE 2 AC5 17 GLY C 110 GLN C 111 GLU C 191 ALA C 195 SITE 3 AC5 17 MET C 198 GLY C 199 PHE C 202 TYR C 204 SITE 4 AC5 17 GLU C 208 TYR C 212 CIT C 302 GOL C 303 SITE 5 AC5 17 HOH C 454 SITE 1 AC6 8 GLN C 111 LYS C 138 ILE C 146 TYR C 168 SITE 2 AC6 8 GLU C 191 MET C 198 SAM C 301 HOH C 451 SITE 1 AC7 7 ALA C 92 SER C 93 THR C 94 PRO C 95 SITE 2 AC7 7 SER C 98 SAM C 301 HOH C 451 SITE 1 AC8 16 ARG D 89 ALA D 92 SER D 98 ARG D 107 SITE 2 AC8 16 GLY D 110 GLN D 111 GLU D 191 ILE D 194 SITE 3 AC8 16 ALA D 195 MET D 198 GLY D 199 PHE D 202 SITE 4 AC8 16 TYR D 204 GLU D 208 TYR D 212 GOL D 302 SITE 1 AC9 5 GLN D 111 LYS D 171 GLU D 191 MET D 198 SITE 2 AC9 5 SAM D 301 CRYST1 134.304 53.976 134.794 90.00 90.11 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007446 0.000000 0.000014 0.00000 SCALE2 0.000000 0.018527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007419 0.00000