data_4R2D # _entry.id 4R2D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4R2D NDB NA3131 RCSB RCSB086811 WWPDB D_1000086811 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4R2A . unspecified PDB 4R2C . unspecified PDB 4R2E . unspecified PDB 4R2P . unspecified PDB 4R2Q . unspecified PDB 4R2R . unspecified PDB 4R2S . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4R2D _pdbx_database_status.recvd_initial_deposition_date 2014-08-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hashimoto, H.' 1 'Olanrewaju, Y.O.' 2 'Zheng, Y.' 3 'Wilson, G.G.' 4 'Zhang, X.' 5 'Cheng, X.' 6 # _citation.id primary _citation.title 'Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence.' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 28 _citation.page_first 2304 _citation.page_last 2313 _citation.year 2014 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25258363 _citation.pdbx_database_id_DOI 10.1101/gad.250746.114 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hashimoto, H.' 1 primary 'Olanrewaju, Y.O.' 2 primary 'Zheng, Y.' 3 primary 'Wilson, G.G.' 4 primary 'Zhang, X.' 5 primary 'Cheng, X.' 6 # _cell.entry_id 4R2D _cell.length_a 43.948 _cell.length_b 55.912 _cell.length_c 127.921 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4R2D _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Early growth response protein 1' 11133.757 1 ? ? 'Zinc Finger 1-3' ? 2 polymer syn ;DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(5FC)P*GP*T)-3') ; 3458.243 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*AP*(5FC)P*GP*CP*CP*CP*AP*CP*GP*C)-3') ; 3307.161 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 5 water nat water 18.015 83 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;EGR-1, AT225, Nerve growth factor-induced protein A, NGFI-A, Transcription factor ETR103, Transcription factor Zif268, Zinc finger protein 225, Zinc finger protein Krox-24 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPLGSERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD ERKRHTKIHLRQKD ; ;GPLGSERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD ERKRHTKIHLRQKD ; A ? 2 polydeoxyribonucleotide no yes '(DA)(DG)(DC)(DG)(DT)(DG)(DG)(DG)(5FC)(DG)(DT)' AGCGTGGGCGT B ? 3 polydeoxyribonucleotide no yes '(DT)(DA)(5FC)(DG)(DC)(DC)(DC)(DA)(DC)(DG)(DC)' TACGCCCACGC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLU n 1 7 ARG n 1 8 PRO n 1 9 TYR n 1 10 ALA n 1 11 CYS n 1 12 PRO n 1 13 VAL n 1 14 GLU n 1 15 SER n 1 16 CYS n 1 17 ASP n 1 18 ARG n 1 19 ARG n 1 20 PHE n 1 21 SER n 1 22 ARG n 1 23 SER n 1 24 ASP n 1 25 GLU n 1 26 LEU n 1 27 THR n 1 28 ARG n 1 29 HIS n 1 30 ILE n 1 31 ARG n 1 32 ILE n 1 33 HIS n 1 34 THR n 1 35 GLY n 1 36 GLN n 1 37 LYS n 1 38 PRO n 1 39 PHE n 1 40 GLN n 1 41 CYS n 1 42 ARG n 1 43 ILE n 1 44 CYS n 1 45 MET n 1 46 ARG n 1 47 ASN n 1 48 PHE n 1 49 SER n 1 50 ARG n 1 51 SER n 1 52 ASP n 1 53 HIS n 1 54 LEU n 1 55 THR n 1 56 THR n 1 57 HIS n 1 58 ILE n 1 59 ARG n 1 60 THR n 1 61 HIS n 1 62 THR n 1 63 GLY n 1 64 GLU n 1 65 LYS n 1 66 PRO n 1 67 PHE n 1 68 ALA n 1 69 CYS n 1 70 ASP n 1 71 ILE n 1 72 CYS n 1 73 GLY n 1 74 ARG n 1 75 LYS n 1 76 PHE n 1 77 ALA n 1 78 ARG n 1 79 SER n 1 80 ASP n 1 81 GLU n 1 82 ARG n 1 83 LYS n 1 84 ARG n 1 85 HIS n 1 86 THR n 1 87 LYS n 1 88 ILE n 1 89 HIS n 1 90 LEU n 1 91 ARG n 1 92 GLN n 1 93 LYS n 1 94 ASP n 2 1 DA n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DT n 2 6 DG n 2 7 DG n 2 8 DG n 2 9 5FC n 2 10 DG n 2 11 DT n 3 1 DT n 3 2 DA n 3 3 5FC n 3 4 DG n 3 5 DC n 3 6 DC n 3 7 DC n 3 8 DA n 3 9 DC n 3 10 DG n 3 11 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'EGR1, KROX24, ZNF225' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) codon plus' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pGEX6p-1, pXC1272' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'synthetic construct' ? 32630 'chemical synthesis' 3 1 sample ? ? 'synthetic construct' ? 32630 'chemical synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP EGR1_HUMAN P18146 1 ;ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH TKIHLRQKD ; 335 ? 2 PDB 4R2D 4R2D 2 ? ? ? 3 PDB 4R2D 4R2D 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4R2D A 6 ? 94 ? P18146 335 ? 423 ? 335 423 2 2 4R2D B 1 ? 11 ? 4R2D 1 ? 11 ? 1 11 3 3 4R2D C 1 ? 11 ? 4R2D 1 ? 11 ? 1 11 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4R2D GLY A 1 ? UNP P18146 ? ? 'EXPRESSION TAG' 330 1 1 4R2D PRO A 2 ? UNP P18146 ? ? 'EXPRESSION TAG' 331 2 1 4R2D LEU A 3 ? UNP P18146 ? ? 'EXPRESSION TAG' 332 3 1 4R2D GLY A 4 ? UNP P18146 ? ? 'EXPRESSION TAG' 333 4 1 4R2D SER A 5 ? UNP P18146 ? ? 'EXPRESSION TAG' 334 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5FC 'DNA linking' n "5-FORMYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" "2'-DEOXY-5-FORMYLCYTIDINE-5'-MONOPHOSPHATE" 'C10 H14 N3 O8 P' 335.207 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 4R2D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 43.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 10.5 _exptl_crystal_grow.pdbx_details '30% (v/v) PEG 400, 0.1 M CHES pH 10.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.details ? _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2013-10-07 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 2.088 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 38.3 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4R2D _reflns.B_iso_Wilson_estimate 35.21 _reflns.percent_possible_obs 98.1 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all ? _reflns.d_resolution_low 34.5567 _reflns.pdbx_redundancy 12.8 _reflns.number_obs 9534 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.09 _reflns_shell.d_res_low 2.16 _reflns_shell.percent_possible_all 96.7 _reflns_shell.Rmerge_I_obs 0.347 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.4 _reflns_shell.pdbx_redundancy 12.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 893 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_percent_reflns_R_free 4.95 _refine.overall_SU_B ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4R2D _refine.aniso_B[2][3] ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML 0.26 _refine.aniso_B[1][3] ? _refine.pdbx_stereochemistry_target_values ML _refine.aniso_B[3][3] ? _refine.solvent_model_param_ksol ? _refine.ls_number_restraints ? _refine.aniso_B[1][1] ? _refine.pdbx_overall_ESU_R ? _refine.ls_R_factor_obs 0.1996 _refine.occupancy_min ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_starting_model 'PDB ENTRY 4R2A' _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.occupancy_max ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.correlation_coeff_Fo_to_Fc ? _refine.ls_number_reflns_R_free 470 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_ls_sigma_F 1.36 _refine.ls_percent_reflns_obs 98.04 _refine.ls_R_factor_R_work 0.1975 _refine.overall_SU_R_free ? _refine.ls_d_res_high 2.088 _refine.pdbx_overall_ESU_R_Free ? _refine.B_iso_min ? _refine.pdbx_ls_cross_valid_method ? _refine.B_iso_mean ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all 0.1996 _refine.aniso_B[2][2] ? _refine.B_iso_max ? _refine.pdbx_ls_sigma_I ? _refine.ls_d_res_low 34.552 _refine.pdbx_overall_phase_error 25.44 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.aniso_B[1][2] ? _refine.ls_R_factor_R_free 0.2391 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 9496 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ? _refine.ls_number_reflns_all 9496 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 709 _refine_hist.pdbx_number_atoms_nucleic_acid 449 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 83 _refine_hist.number_atoms_total 1244 _refine_hist.d_res_high 2.088 _refine_hist.d_res_low 34.552 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.004 ? ? 1339 ? 'X-RAY DIFFRACTION' f_angle_d 0.635 ? ? 1915 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 22.672 ? ? 585 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.027 ? ? 215 ? 'X-RAY DIFFRACTION' f_plane_restr 0.002 ? ? 157 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs 'X-RAY DIFFRACTION' . 2.0882 2.3904 2909 0.2411 97.00 0.2816 . . 141 . . 3050 . 'X-RAY DIFFRACTION' . 2.3904 3.0113 2967 0.2530 98.00 0.3158 . . 170 . . 3137 . 'X-RAY DIFFRACTION' . 3.0113 34.5567 3150 0.1684 99.00 0.2005 . . 159 . . 3309 . # _struct.entry_id 4R2D _struct.title 'Egr1/Zif268 zinc fingers in complex with formylated DNA' _struct.pdbx_descriptor 'Early growth response protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R2D _struct_keywords.pdbx_keywords 'DNA Binding Protein/DNA' _struct_keywords.text 'Zinc Finger, Transcription, DNA Binding Protein-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 22 ? GLY A 35 ? ARG A 351 GLY A 364 1 ? 14 HELX_P HELX_P2 2 ARG A 50 ? GLY A 63 ? ARG A 379 GLY A 392 1 ? 14 HELX_P HELX_P3 3 ARG A 78 ? LYS A 87 ? ARG A 407 LYS A 416 1 ? 10 HELX_P HELX_P4 4 ILE A 88 ? LEU A 90 ? ILE A 417 LEU A 419 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B DG 8 "O3'" A ? ? 1_555 B 5FC 9 P ? ? B DG 8 B 5FC 9 1_555 ? ? ? ? ? ? ? 1.608 ? covale2 covale ? ? B DG 8 "O3'" B ? ? 1_555 B 5FC 9 P ? ? B DG 8 B 5FC 9 1_555 ? ? ? ? ? ? ? 1.606 ? covale3 covale ? ? B 5FC 9 "O3'" ? ? ? 1_555 B DG 10 P ? ? B 5FC 9 B DG 10 1_555 ? ? ? ? ? ? ? 1.607 ? covale4 covale ? ? C DA 2 "O3'" ? ? ? 1_555 C 5FC 3 P ? ? C DA 2 C 5FC 3 1_555 ? ? ? ? ? ? ? 1.606 ? covale5 covale ? ? C 5FC 3 "O3'" ? ? ? 1_555 C DG 4 P ? ? C 5FC 3 C DG 4 1_555 ? ? ? ? ? ? ? 1.606 ? metalc1 metalc ? ? A HIS 33 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 362 A ZN 501 1_555 ? ? ? ? ? ? ? 2.023 ? metalc2 metalc ? ? A HIS 89 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 418 A ZN 503 1_555 ? ? ? ? ? ? ? 2.032 ? metalc3 metalc ? ? A HIS 29 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 358 A ZN 501 1_555 ? ? ? ? ? ? ? 2.035 ? metalc4 metalc ? ? A HIS 57 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 386 A ZN 502 1_555 ? ? ? ? ? ? ? 2.040 ? metalc5 metalc ? ? A HIS 85 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 414 A ZN 503 1_555 ? ? ? ? ? ? ? 2.044 ? metalc6 metalc ? ? A HIS 61 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 390 A ZN 502 1_555 ? ? ? ? ? ? ? 2.046 ? metalc7 metalc ? ? A CYS 72 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 401 A ZN 503 1_555 ? ? ? ? ? ? ? 2.275 ? metalc8 metalc ? ? A CYS 44 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 373 A ZN 502 1_555 ? ? ? ? ? ? ? 2.290 ? metalc9 metalc ? ? A CYS 11 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 340 A ZN 501 1_555 ? ? ? ? ? ? ? 2.315 ? metalc10 metalc ? ? A CYS 16 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 345 A ZN 501 1_555 ? ? ? ? ? ? ? 2.328 ? metalc11 metalc ? ? A CYS 41 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 370 A ZN 502 1_555 ? ? ? ? ? ? ? 2.334 ? metalc12 metalc ? ? A CYS 69 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 398 A ZN 503 1_555 ? ? ? ? ? ? ? 2.343 ? hydrog1 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 11 N3 ? ? B DG 2 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 11 O2 ? ? B DG 2 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 11 N4 ? ? B DG 2 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 8 N1 ? ? B DT 5 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 8 N6 ? ? B DT 5 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 6 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 6 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 6 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B 5FC 9 N3 ? ? ? 1_555 C DG 4 N1 ? ? B 5FC 9 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B 5FC 9 N4 ? ? ? 1_555 C DG 4 O6 ? ? B 5FC 9 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B 5FC 9 O2 ? ? ? 1_555 C DG 4 N2 ? ? B 5FC 9 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C 5FC 3 N3 ? ? B DG 10 C 5FC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C 5FC 3 O2 ? ? B DG 10 C 5FC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C 5FC 3 N4 ? ? B DG 10 C 5FC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B DT 11 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 11 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B DT 11 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 11 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 9 ? ALA A 10 ? TYR A 338 ALA A 339 A 2 ARG A 19 ? PHE A 20 ? ARG A 348 PHE A 349 B 1 PHE A 39 ? GLN A 40 ? PHE A 368 GLN A 369 B 2 ASN A 47 ? PHE A 48 ? ASN A 376 PHE A 377 C 1 PHE A 67 ? ALA A 68 ? PHE A 396 ALA A 397 C 2 LYS A 75 ? PHE A 76 ? LYS A 404 PHE A 405 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 9 ? N TYR A 338 O PHE A 20 ? O PHE A 349 B 1 2 N PHE A 39 ? N PHE A 368 O PHE A 48 ? O PHE A 377 C 1 2 N PHE A 67 ? N PHE A 396 O PHE A 76 ? O PHE A 405 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 501' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 502' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 503' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 11 ? CYS A 340 . ? 1_555 ? 2 AC1 4 CYS A 16 ? CYS A 345 . ? 1_555 ? 3 AC1 4 HIS A 29 ? HIS A 358 . ? 1_555 ? 4 AC1 4 HIS A 33 ? HIS A 362 . ? 1_555 ? 5 AC2 4 CYS A 41 ? CYS A 370 . ? 1_555 ? 6 AC2 4 CYS A 44 ? CYS A 373 . ? 1_555 ? 7 AC2 4 HIS A 57 ? HIS A 386 . ? 1_555 ? 8 AC2 4 HIS A 61 ? HIS A 390 . ? 1_555 ? 9 AC3 4 CYS A 69 ? CYS A 398 . ? 1_555 ? 10 AC3 4 CYS A 72 ? CYS A 401 . ? 1_555 ? 11 AC3 4 HIS A 85 ? HIS A 414 . ? 1_555 ? 12 AC3 4 HIS A 89 ? HIS A 418 . ? 1_555 ? # _database_PDB_matrix.entry_id 4R2D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4R2D _atom_sites.fract_transf_matrix[1][1] 0.022754 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017885 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007817 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 330 ? ? ? A . n A 1 2 PRO 2 331 ? ? ? A . n A 1 3 LEU 3 332 ? ? ? A . n A 1 4 GLY 4 333 ? ? ? A . n A 1 5 SER 5 334 ? ? ? A . n A 1 6 GLU 6 335 335 GLU SER A . n A 1 7 ARG 7 336 336 ARG ARG A . n A 1 8 PRO 8 337 337 PRO PRO A . n A 1 9 TYR 9 338 338 TYR TYR A . n A 1 10 ALA 10 339 339 ALA ALA A . n A 1 11 CYS 11 340 340 CYS CYS A . n A 1 12 PRO 12 341 341 PRO PRO A . n A 1 13 VAL 13 342 342 VAL VAL A . n A 1 14 GLU 14 343 343 GLU GLU A . n A 1 15 SER 15 344 344 SER SER A . n A 1 16 CYS 16 345 345 CYS CYS A . n A 1 17 ASP 17 346 346 ASP ASP A . n A 1 18 ARG 18 347 347 ARG ARG A . n A 1 19 ARG 19 348 348 ARG ARG A . n A 1 20 PHE 20 349 349 PHE PHE A . n A 1 21 SER 21 350 350 SER SER A . n A 1 22 ARG 22 351 351 ARG ARG A . n A 1 23 SER 23 352 352 SER SER A . n A 1 24 ASP 24 353 353 ASP ASP A . n A 1 25 GLU 25 354 354 GLU GLU A . n A 1 26 LEU 26 355 355 LEU LEU A . n A 1 27 THR 27 356 356 THR THR A . n A 1 28 ARG 28 357 357 ARG ARG A . n A 1 29 HIS 29 358 358 HIS HIS A . n A 1 30 ILE 30 359 359 ILE ILE A . n A 1 31 ARG 31 360 360 ARG ARG A . n A 1 32 ILE 32 361 361 ILE ILE A . n A 1 33 HIS 33 362 362 HIS HIS A . n A 1 34 THR 34 363 363 THR THR A . n A 1 35 GLY 35 364 364 GLY GLY A . n A 1 36 GLN 36 365 365 GLN GLN A . n A 1 37 LYS 37 366 366 LYS LYS A . n A 1 38 PRO 38 367 367 PRO PRO A . n A 1 39 PHE 39 368 368 PHE PHE A . n A 1 40 GLN 40 369 369 GLN GLN A . n A 1 41 CYS 41 370 370 CYS CYS A . n A 1 42 ARG 42 371 371 ARG ARG A . n A 1 43 ILE 43 372 372 ILE ILE A . n A 1 44 CYS 44 373 373 CYS CYS A . n A 1 45 MET 45 374 374 MET MET A . n A 1 46 ARG 46 375 375 ARG ARG A . n A 1 47 ASN 47 376 376 ASN ASN A . n A 1 48 PHE 48 377 377 PHE PHE A . n A 1 49 SER 49 378 378 SER SER A . n A 1 50 ARG 50 379 379 ARG ARG A . n A 1 51 SER 51 380 380 SER SER A . n A 1 52 ASP 52 381 381 ASP ASP A . n A 1 53 HIS 53 382 382 HIS HIS A . n A 1 54 LEU 54 383 383 LEU LEU A . n A 1 55 THR 55 384 384 THR THR A . n A 1 56 THR 56 385 385 THR THR A . n A 1 57 HIS 57 386 386 HIS HIS A . n A 1 58 ILE 58 387 387 ILE ILE A . n A 1 59 ARG 59 388 388 ARG ARG A . n A 1 60 THR 60 389 389 THR THR A . n A 1 61 HIS 61 390 390 HIS HIS A . n A 1 62 THR 62 391 391 THR THR A . n A 1 63 GLY 63 392 392 GLY GLY A . n A 1 64 GLU 64 393 393 GLU GLU A . n A 1 65 LYS 65 394 394 LYS LYS A . n A 1 66 PRO 66 395 395 PRO PRO A . n A 1 67 PHE 67 396 396 PHE PHE A . n A 1 68 ALA 68 397 397 ALA ALA A . n A 1 69 CYS 69 398 398 CYS CYS A . n A 1 70 ASP 70 399 399 ASP ASP A . n A 1 71 ILE 71 400 400 ILE ILE A . n A 1 72 CYS 72 401 401 CYS CYS A . n A 1 73 GLY 73 402 402 GLY GLY A . n A 1 74 ARG 74 403 403 ARG ARG A . n A 1 75 LYS 75 404 404 LYS LYS A . n A 1 76 PHE 76 405 405 PHE PHE A . n A 1 77 ALA 77 406 406 ALA ALA A . n A 1 78 ARG 78 407 407 ARG ARG A . n A 1 79 SER 79 408 408 SER SER A . n A 1 80 ASP 80 409 409 ASP ASP A . n A 1 81 GLU 81 410 410 GLU GLU A . n A 1 82 ARG 82 411 411 ARG ARG A . n A 1 83 LYS 83 412 412 LYS LYS A . n A 1 84 ARG 84 413 413 ARG ARG A . n A 1 85 HIS 85 414 414 HIS HIS A . n A 1 86 THR 86 415 415 THR THR A . n A 1 87 LYS 87 416 416 LYS LYS A . n A 1 88 ILE 88 417 417 ILE ILE A . n A 1 89 HIS 89 418 418 HIS HIS A . n A 1 90 LEU 90 419 419 LEU LEU A . n A 1 91 ARG 91 420 420 ARG ARG A . n A 1 92 GLN 92 421 421 GLN GLN A . n A 1 93 LYS 93 422 ? ? ? A . n A 1 94 ASP 94 423 ? ? ? A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 5FC 9 9 9 5FC 5FC B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DT 11 11 11 DT DT B . n C 3 1 DT 1 1 1 DT DT C . n C 3 2 DA 2 2 2 DA DA C . n C 3 3 5FC 3 3 3 5FC 5FC C . n C 3 4 DG 4 4 4 DG DG C . n C 3 5 DC 5 5 5 DC DC C . n C 3 6 DC 6 6 6 DC DC C . n C 3 7 DC 7 7 7 DC DC C . n C 3 8 DA 8 8 8 DA DA C . n C 3 9 DC 9 9 9 DC DC C . n C 3 10 DG 10 10 10 DG DG C . n C 3 11 DC 11 11 11 DC DC C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 501 1 ZN ZN A . E 4 ZN 1 502 2 ZN ZN A . F 4 ZN 1 503 3 ZN ZN A . G 5 HOH 1 601 1 HOH HOH A . G 5 HOH 2 602 2 HOH HOH A . G 5 HOH 3 603 3 HOH HOH A . G 5 HOH 4 604 4 HOH HOH A . G 5 HOH 5 605 6 HOH HOH A . G 5 HOH 6 606 10 HOH HOH A . G 5 HOH 7 607 11 HOH HOH A . G 5 HOH 8 608 12 HOH HOH A . G 5 HOH 9 609 13 HOH HOH A . G 5 HOH 10 610 15 HOH HOH A . G 5 HOH 11 611 16 HOH HOH A . G 5 HOH 12 612 18 HOH HOH A . G 5 HOH 13 613 19 HOH HOH A . G 5 HOH 14 614 20 HOH HOH A . G 5 HOH 15 615 23 HOH HOH A . G 5 HOH 16 616 24 HOH HOH A . G 5 HOH 17 617 26 HOH HOH A . G 5 HOH 18 618 28 HOH HOH A . G 5 HOH 19 619 31 HOH HOH A . G 5 HOH 20 620 32 HOH HOH A . G 5 HOH 21 621 33 HOH HOH A . G 5 HOH 22 622 37 HOH HOH A . G 5 HOH 23 623 38 HOH HOH A . G 5 HOH 24 624 39 HOH HOH A . G 5 HOH 25 625 41 HOH HOH A . G 5 HOH 26 626 42 HOH HOH A . G 5 HOH 27 627 45 HOH HOH A . G 5 HOH 28 628 46 HOH HOH A . G 5 HOH 29 629 47 HOH HOH A . G 5 HOH 30 630 53 HOH HOH A . G 5 HOH 31 631 55 HOH HOH A . G 5 HOH 32 632 60 HOH HOH A . G 5 HOH 33 633 61 HOH HOH A . G 5 HOH 34 634 62 HOH HOH A . G 5 HOH 35 635 67 HOH HOH A . G 5 HOH 36 636 68 HOH HOH A . G 5 HOH 37 637 69 HOH HOH A . G 5 HOH 38 638 71 HOH HOH A . G 5 HOH 39 639 74 HOH HOH A . G 5 HOH 40 640 75 HOH HOH A . G 5 HOH 41 641 76 HOH HOH A . G 5 HOH 42 642 78 HOH HOH A . G 5 HOH 43 643 80 HOH HOH A . G 5 HOH 44 644 82 HOH HOH A . G 5 HOH 45 645 83 HOH HOH A . G 5 HOH 46 646 84 HOH HOH A . G 5 HOH 47 647 85 HOH HOH A . G 5 HOH 48 648 14 HOH HOH A . G 5 HOH 49 649 17 HOH HOH A . H 5 HOH 1 101 5 HOH HOH B . H 5 HOH 2 102 8 HOH HOH B . H 5 HOH 3 103 9 HOH HOH B . H 5 HOH 4 104 21 HOH HOH B . H 5 HOH 5 105 25 HOH HOH B . H 5 HOH 6 106 27 HOH HOH B . H 5 HOH 7 107 29 HOH HOH B . H 5 HOH 8 108 34 HOH HOH B . H 5 HOH 9 109 36 HOH HOH B . H 5 HOH 10 110 40 HOH HOH B . H 5 HOH 11 111 43 HOH HOH B . H 5 HOH 12 112 44 HOH HOH B . H 5 HOH 13 113 48 HOH HOH B . H 5 HOH 14 114 49 HOH HOH B . H 5 HOH 15 115 51 HOH HOH B . H 5 HOH 16 116 52 HOH HOH B . H 5 HOH 17 117 54 HOH HOH B . H 5 HOH 18 118 57 HOH HOH B . H 5 HOH 19 119 59 HOH HOH B . H 5 HOH 20 120 64 HOH HOH B . H 5 HOH 21 121 66 HOH HOH B . H 5 HOH 22 122 72 HOH HOH B . H 5 HOH 23 123 77 HOH HOH B . I 5 HOH 1 101 7 HOH HOH C . I 5 HOH 2 102 22 HOH HOH C . I 5 HOH 3 103 30 HOH HOH C . I 5 HOH 4 104 35 HOH HOH C . I 5 HOH 5 105 50 HOH HOH C . I 5 HOH 6 106 56 HOH HOH C . I 5 HOH 7 107 58 HOH HOH C . I 5 HOH 8 108 63 HOH HOH C . I 5 HOH 9 109 65 HOH HOH C . I 5 HOH 10 110 70 HOH HOH C . I 5 HOH 11 111 73 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B 5FC 9 B 5FC 9 ? DC ? 2 C 5FC 3 C 5FC 3 ? DC ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5330 ? 1 MORE -3 ? 1 'SSA (A^2)' 7800 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 636 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 33 ? A HIS 362 ? 1_555 ZN ? D ZN . ? A ZN 501 ? 1_555 NE2 ? A HIS 29 ? A HIS 358 ? 1_555 109.1 ? 2 NE2 ? A HIS 33 ? A HIS 362 ? 1_555 ZN ? D ZN . ? A ZN 501 ? 1_555 SG ? A CYS 11 ? A CYS 340 ? 1_555 105.7 ? 3 NE2 ? A HIS 29 ? A HIS 358 ? 1_555 ZN ? D ZN . ? A ZN 501 ? 1_555 SG ? A CYS 11 ? A CYS 340 ? 1_555 109.8 ? 4 NE2 ? A HIS 33 ? A HIS 362 ? 1_555 ZN ? D ZN . ? A ZN 501 ? 1_555 SG ? A CYS 16 ? A CYS 345 ? 1_555 122.3 ? 5 NE2 ? A HIS 29 ? A HIS 358 ? 1_555 ZN ? D ZN . ? A ZN 501 ? 1_555 SG ? A CYS 16 ? A CYS 345 ? 1_555 100.8 ? 6 SG ? A CYS 11 ? A CYS 340 ? 1_555 ZN ? D ZN . ? A ZN 501 ? 1_555 SG ? A CYS 16 ? A CYS 345 ? 1_555 108.9 ? 7 NE2 ? A HIS 89 ? A HIS 418 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 NE2 ? A HIS 85 ? A HIS 414 ? 1_555 107.4 ? 8 NE2 ? A HIS 89 ? A HIS 418 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 SG ? A CYS 72 ? A CYS 401 ? 1_555 117.3 ? 9 NE2 ? A HIS 85 ? A HIS 414 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 SG ? A CYS 72 ? A CYS 401 ? 1_555 102.9 ? 10 NE2 ? A HIS 89 ? A HIS 418 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 SG ? A CYS 69 ? A CYS 398 ? 1_555 108.3 ? 11 NE2 ? A HIS 85 ? A HIS 414 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 SG ? A CYS 69 ? A CYS 398 ? 1_555 105.3 ? 12 SG ? A CYS 72 ? A CYS 401 ? 1_555 ZN ? F ZN . ? A ZN 503 ? 1_555 SG ? A CYS 69 ? A CYS 398 ? 1_555 114.6 ? 13 NE2 ? A HIS 57 ? A HIS 386 ? 1_555 ZN ? E ZN . ? A ZN 502 ? 1_555 NE2 ? A HIS 61 ? A HIS 390 ? 1_555 97.7 ? 14 NE2 ? A HIS 57 ? A HIS 386 ? 1_555 ZN ? E ZN . ? A ZN 502 ? 1_555 SG ? A CYS 44 ? A CYS 373 ? 1_555 105.5 ? 15 NE2 ? A HIS 61 ? A HIS 390 ? 1_555 ZN ? E ZN . ? A ZN 502 ? 1_555 SG ? A CYS 44 ? A CYS 373 ? 1_555 111.7 ? 16 NE2 ? A HIS 57 ? A HIS 386 ? 1_555 ZN ? E ZN . ? A ZN 502 ? 1_555 SG ? A CYS 41 ? A CYS 370 ? 1_555 109.4 ? 17 NE2 ? A HIS 61 ? A HIS 390 ? 1_555 ZN ? E ZN . ? A ZN 502 ? 1_555 SG ? A CYS 41 ? A CYS 370 ? 1_555 116.1 ? 18 SG ? A CYS 44 ? A CYS 373 ? 1_555 ZN ? E ZN . ? A ZN 502 ? 1_555 SG ? A CYS 41 ? A CYS 370 ? 1_555 114.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-08 2 'Structure model' 1 1 2014-11-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _software.name PHENIX _software.classification refinement _software.version '(phenix.refine: 1.8.4_1496)' _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 335 ? CG ? A GLU 6 CG 2 1 Y 1 A GLU 335 ? CD ? A GLU 6 CD 3 1 Y 1 A GLU 335 ? OE1 ? A GLU 6 OE1 4 1 Y 1 A GLU 335 ? OE2 ? A GLU 6 OE2 5 1 Y 1 A ASP 346 ? CG ? A ASP 17 CG 6 1 Y 1 A ASP 346 ? OD1 ? A ASP 17 OD1 7 1 Y 1 A ASP 346 ? OD2 ? A ASP 17 OD2 8 1 Y 1 A ARG 347 ? NE ? A ARG 18 NE 9 1 Y 1 A ARG 347 ? CZ ? A ARG 18 CZ 10 1 Y 1 A ARG 347 ? NH1 ? A ARG 18 NH1 11 1 Y 1 A ARG 347 ? NH2 ? A ARG 18 NH2 12 1 Y 1 A ARG 420 ? CG ? A ARG 91 CG 13 1 Y 1 A ARG 420 ? CD ? A ARG 91 CD 14 1 Y 1 A ARG 420 ? NE ? A ARG 91 NE 15 1 Y 1 A ARG 420 ? CZ ? A ARG 91 CZ 16 1 Y 1 A ARG 420 ? NH1 ? A ARG 91 NH1 17 1 Y 1 A ARG 420 ? NH2 ? A ARG 91 NH2 18 1 Y 1 A GLN 421 ? CG ? A GLN 92 CG 19 1 Y 1 A GLN 421 ? CD ? A GLN 92 CD 20 1 Y 1 A GLN 421 ? OE1 ? A GLN 92 OE1 21 1 Y 1 A GLN 421 ? NE2 ? A GLN 92 NE2 22 1 Y 0 B DG 7 ? P A B DG 7 P 23 1 Y 0 B DG 7 ? OP1 A B DG 7 OP1 24 1 Y 0 B DG 7 ? OP2 A B DG 7 OP2 25 1 Y 0 B DG 7 ? "O5'" A B DG 7 "O5'" 26 1 Y 0 B DG 7 ? "C5'" A B DG 7 "C5'" 27 1 Y 0 B DG 7 ? "C4'" A B DG 7 "C4'" 28 1 Y 0 B DG 7 ? "O4'" A B DG 7 "O4'" 29 1 Y 0 B DG 7 ? "C3'" A B DG 7 "C3'" 30 1 Y 0 B DG 7 ? "O3'" A B DG 7 "O3'" 31 1 Y 0 B DG 7 ? "C2'" A B DG 7 "C2'" 32 1 Y 0 B DG 7 ? "C1'" A B DG 7 "C1'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 330 ? A GLY 1 2 1 Y 1 A PRO 331 ? A PRO 2 3 1 Y 1 A LEU 332 ? A LEU 3 4 1 Y 1 A GLY 333 ? A GLY 4 5 1 Y 1 A SER 334 ? A SER 5 6 1 Y 1 A LYS 422 ? A LYS 93 7 1 Y 1 A ASP 423 ? A ASP 94 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4R2D 'double helix' 4R2D 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 2 1_555 C DC 11 1_555 -0.344 -0.312 -0.049 -7.480 -5.017 3.860 1 B_DG2:DC11_C B 2 ? C 11 ? 19 1 1 B DC 3 1_555 C DG 10 1_555 0.756 -0.059 -0.360 12.750 -2.468 10.012 2 B_DC3:DG10_C B 3 ? C 10 ? 19 1 1 B DG 4 1_555 C DC 9 1_555 -0.447 -0.062 0.127 1.139 -5.406 0.554 3 B_DG4:DC9_C B 4 ? C 9 ? 19 1 1 B DT 5 1_555 C DA 8 1_555 0.520 0.037 0.101 11.497 -10.963 8.914 4 B_DT5:DA8_C B 5 ? C 8 ? 20 1 1 B DG 6 1_555 C DC 7 1_555 -0.873 0.034 0.619 9.854 -11.342 3.998 5 B_DG6:DC7_C B 6 ? C 7 ? 19 1 1 B DG 7 1_555 C DC 6 1_555 -0.175 -0.012 0.354 -7.173 -13.646 -2.919 6 B_DG7:DC6_C B 7 ? C 6 ? 19 1 1 B DG 8 1_555 C DC 5 1_555 0.377 -0.119 0.005 -0.238 -16.398 -4.072 7 B_DG8:DC5_C B 8 ? C 5 ? 19 1 1 B 5FC 9 1_555 C DG 4 1_555 -0.170 -0.053 0.004 -3.853 -11.555 -1.488 8 B_5FC9:DG4_C B 9 ? C 4 ? 19 1 1 B DG 10 1_555 C 5FC 3 1_555 -0.449 -0.102 0.325 5.576 -14.074 4.431 9 B_DG10:5FC3_C B 10 ? C 3 ? 19 1 1 B DT 11 1_555 C DA 2 1_555 0.377 -0.034 -0.222 6.418 -9.879 4.683 10 B_DT11:DA2_C B 11 ? C 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 2 1_555 C DC 11 1_555 B DC 3 1_555 C DG 10 1_555 0.805 -0.337 2.808 2.264 7.185 28.454 -1.982 -1.170 2.698 14.302 -4.506 29.415 1 BB_DG2DC3:DG10DC11_CC B 2 ? C 11 ? B 3 ? C 10 ? 1 B DC 3 1_555 C DG 10 1_555 B DG 4 1_555 C DC 9 1_555 -1.356 -0.424 3.494 -6.815 5.925 29.350 -2.088 1.084 3.561 11.359 13.066 30.679 2 BB_DC3DG4:DC9DG10_CC B 3 ? C 10 ? B 4 ? C 9 ? 1 B DG 4 1_555 C DC 9 1_555 B DT 5 1_555 C DA 8 1_555 0.650 -0.597 3.088 -0.033 10.089 31.965 -2.564 -1.133 2.777 17.776 0.057 33.480 3 BB_DG4DT5:DA8DC9_CC B 4 ? C 9 ? B 5 ? C 8 ? 1 B DT 5 1_555 C DA 8 1_555 B DG 6 1_555 C DC 7 1_555 -1.107 -0.275 3.291 -9.514 -2.691 29.204 0.042 0.108 3.482 -5.155 18.222 30.798 4 BB_DT5DG6:DC7DA8_CC B 5 ? C 8 ? B 6 ? C 7 ? 1 B DG 6 1_555 C DC 7 1_555 B DG 7 1_555 C DC 6 1_555 -0.871 -1.029 3.633 -1.532 -2.155 36.909 -1.295 1.141 3.717 -3.399 2.416 37.000 5 BB_DG6DG7:DC6DC7_CC B 6 ? C 7 ? B 7 ? C 6 ? 1 B DG 7 1_555 C DC 6 1_555 B DG 8 1_555 C DC 5 1_555 -0.146 -0.499 3.232 0.950 8.470 37.549 -1.780 0.337 3.048 12.955 -1.453 38.470 6 BB_DG7DG8:DC5DC6_CC B 7 ? C 6 ? B 8 ? C 5 ? 1 B DG 8 1_555 C DC 5 1_555 B 5FC 9 1_555 C DG 4 1_555 1.018 -0.662 3.316 2.304 -7.595 26.377 0.575 -1.543 3.444 -16.184 -4.909 27.525 7 BB_DG85FC9:DG4DC5_CC B 8 ? C 5 ? B 9 ? C 4 ? 1 B 5FC 9 1_555 C DG 4 1_555 B DG 10 1_555 C 5FC 3 1_555 -0.387 -0.084 3.109 -0.850 9.462 32.345 -1.609 0.536 2.976 16.545 1.487 33.675 8 BB_5FC9DG10:5FC3DG4_CC B 9 ? C 4 ? B 10 ? C 3 ? 1 B DG 10 1_555 C 5FC 3 1_555 B DT 11 1_555 C DA 2 1_555 0.460 -0.472 3.291 2.770 3.037 34.826 -1.241 -0.346 3.265 5.052 -4.608 35.060 9 BB_DG10DT11:DA25FC3_CC B 10 ? C 3 ? B 11 ? C 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH #