HEADER TRANSCRIPTION 13-AUG-14 4R2U TITLE CRYSTAL STRUCTURE OF PPARGAMMA IN COMPLEX WITH SR1664 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 231-505; COMPND 5 SYNONYM: PPAR-GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1C3, PPARG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS NUCLEAR RECEPTOR LIGAND BINDING DOMAIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.P.MARCIANO,T.KAMENECKA,P.R.GRIFFIN,J.B.BRUNING REVDAT 2 20-SEP-23 4R2U 1 REMARK REVDAT 1 01-JUL-15 4R2U 0 JRNL AUTH D.P.MARCIANO,D.S.KURUVILLA,S.V.BOREGOWDA,A.ASTEIAN, JRNL AUTH 2 T.S.HUGHES,R.GARCIA-ORDONEZ,C.A.CORZO,T.M.KHAN,S.J.NOVICK, JRNL AUTH 3 H.PARK,D.J.KOJETIN,D.G.PHINNEY,J.B.BRUNING,T.M.KAMENECKA, JRNL AUTH 4 P.R.GRIFFIN JRNL TITL PHARMACOLOGICAL REPRESSION OF PPAR GAMMA PROMOTES JRNL TITL 2 OSTEOGENESIS. JRNL REF NAT COMMUN V. 6 7443 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26068133 JRNL DOI 10.1038/NCOMMS8443 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 27958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.4767 - 4.9404 0.98 2785 187 0.1800 0.2460 REMARK 3 2 4.9404 - 3.9237 0.98 2722 164 0.1476 0.2068 REMARK 3 3 3.9237 - 3.4284 0.98 2772 129 0.1595 0.2102 REMARK 3 4 3.4284 - 3.1153 0.98 2753 147 0.1906 0.2766 REMARK 3 5 3.1153 - 2.8921 0.98 2709 138 0.2093 0.2814 REMARK 3 6 2.8921 - 2.7217 0.98 2767 131 0.2162 0.2445 REMARK 3 7 2.7217 - 2.5855 0.98 2723 145 0.2410 0.2925 REMARK 3 8 2.5855 - 2.4730 0.98 2677 145 0.2584 0.2961 REMARK 3 9 2.4730 - 2.3778 0.95 2631 150 0.2854 0.3421 REMARK 3 10 2.3778 - 2.3000 0.72 2000 83 0.3041 0.3480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4175 REMARK 3 ANGLE : 1.038 5647 REMARK 3 CHIRALITY : 0.037 653 REMARK 3 PLANARITY : 0.004 715 REMARK 3 DIHEDRAL : 15.527 1553 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1894 -0.6639 42.7698 REMARK 3 T TENSOR REMARK 3 T11: 0.2757 T22: 0.2710 REMARK 3 T33: 0.3434 T12: 0.0280 REMARK 3 T13: -0.0310 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.8296 L22: 1.3976 REMARK 3 L33: 3.9028 L12: 0.5492 REMARK 3 L13: -1.0025 L23: 1.1616 REMARK 3 S TENSOR REMARK 3 S11: -0.3776 S12: -0.2783 S13: -0.0891 REMARK 3 S21: 0.1490 S22: 0.3537 S23: -0.1465 REMARK 3 S31: 0.2169 S32: 0.5471 S33: 0.0333 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9204 11.7662 61.1198 REMARK 3 T TENSOR REMARK 3 T11: 0.2765 T22: 0.4637 REMARK 3 T33: 0.5659 T12: 0.0094 REMARK 3 T13: -0.0161 T23: 0.1061 REMARK 3 L TENSOR REMARK 3 L11: 4.3485 L22: 4.5717 REMARK 3 L33: 4.3475 L12: -0.3170 REMARK 3 L13: -0.5519 L23: 0.4392 REMARK 3 S TENSOR REMARK 3 S11: 0.5003 S12: -0.5586 S13: -0.5811 REMARK 3 S21: 0.1688 S22: -0.4580 S23: -0.9828 REMARK 3 S31: 0.0503 S32: 0.3200 S33: 0.0668 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2023 12.9583 39.3992 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.2792 REMARK 3 T33: 0.3034 T12: 0.0078 REMARK 3 T13: -0.0537 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.9791 L22: 1.9886 REMARK 3 L33: 3.1818 L12: -0.9046 REMARK 3 L13: -2.2905 L23: -0.2521 REMARK 3 S TENSOR REMARK 3 S11: 0.1087 S12: 0.0992 S13: 0.3906 REMARK 3 S21: 0.0566 S22: -0.0419 S23: 0.0409 REMARK 3 S31: -0.4925 S32: -0.1639 S33: -0.1343 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1130 11.7577 51.4996 REMARK 3 T TENSOR REMARK 3 T11: 0.3501 T22: 0.4971 REMARK 3 T33: 0.3331 T12: 0.0564 REMARK 3 T13: 0.0317 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.8029 L22: 2.7862 REMARK 3 L33: 3.7612 L12: -1.8082 REMARK 3 L13: 0.8301 L23: 0.3847 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.5478 S13: -0.2458 REMARK 3 S21: 0.0211 S22: 0.0166 S23: 0.2324 REMARK 3 S31: -0.3879 S32: -0.6301 S33: -0.0086 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9004 -0.7194 37.8641 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.3136 REMARK 3 T33: 0.3988 T12: 0.0095 REMARK 3 T13: -0.0278 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 1.5690 L22: 1.4662 REMARK 3 L33: 2.2532 L12: -0.1148 REMARK 3 L13: -0.6149 L23: 0.5292 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: 0.1616 S13: -0.1609 REMARK 3 S21: 0.0103 S22: -0.1240 S23: 0.0346 REMARK 3 S31: 0.0257 S32: -0.1379 S33: 0.1722 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 403 THROUGH 427 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1075 -9.8547 33.0342 REMARK 3 T TENSOR REMARK 3 T11: 0.2868 T22: 0.3106 REMARK 3 T33: 0.4638 T12: -0.0024 REMARK 3 T13: 0.0302 T23: -0.0814 REMARK 3 L TENSOR REMARK 3 L11: 1.5535 L22: 4.5947 REMARK 3 L33: 4.5152 L12: -0.2754 REMARK 3 L13: 0.7548 L23: -0.6315 REMARK 3 S TENSOR REMARK 3 S11: -0.0285 S12: 0.0349 S13: -0.4266 REMARK 3 S21: -0.3823 S22: 0.0924 S23: 0.0532 REMARK 3 S31: 0.9753 S32: -0.2367 S33: 0.0365 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 428 THROUGH 476 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8612 8.5930 34.7122 REMARK 3 T TENSOR REMARK 3 T11: 0.3313 T22: 0.5034 REMARK 3 T33: 0.4014 T12: 0.0026 REMARK 3 T13: -0.0356 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 1.8357 L22: 1.2893 REMARK 3 L33: 1.7074 L12: -0.7101 REMARK 3 L13: -0.3018 L23: 0.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.1094 S12: 0.4762 S13: -0.0369 REMARK 3 S21: -0.3576 S22: -0.0200 S23: 0.3185 REMARK 3 S31: -0.0785 S32: -0.3603 S33: -0.0796 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 208 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6981 -29.9826 23.4201 REMARK 3 T TENSOR REMARK 3 T11: 0.4472 T22: 0.3717 REMARK 3 T33: 0.4626 T12: 0.0149 REMARK 3 T13: 0.0442 T23: -0.1382 REMARK 3 L TENSOR REMARK 3 L11: 2.0443 L22: 4.0526 REMARK 3 L33: 3.5255 L12: -0.2709 REMARK 3 L13: -0.4090 L23: 0.3329 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: 0.3942 S13: -0.2414 REMARK 3 S21: -0.2447 S22: 0.0392 S23: -0.4478 REMARK 3 S31: 0.4905 S32: 0.2656 S33: -0.1200 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 239 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9162 -22.1465 2.6125 REMARK 3 T TENSOR REMARK 3 T11: 0.7669 T22: 0.9989 REMARK 3 T33: 0.3551 T12: 0.0878 REMARK 3 T13: -0.0128 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 2.3612 L22: 1.1870 REMARK 3 L33: 3.6480 L12: 1.6984 REMARK 3 L13: -0.2067 L23: -0.0875 REMARK 3 S TENSOR REMARK 3 S11: 0.4680 S12: 0.7028 S13: -0.4827 REMARK 3 S21: -0.3475 S22: -0.4952 S23: 0.0006 REMARK 3 S31: 0.1787 S32: -0.3919 S33: 0.0684 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 252 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8312 -17.0755 6.8868 REMARK 3 T TENSOR REMARK 3 T11: 0.8319 T22: 1.0943 REMARK 3 T33: 0.5549 T12: 0.0093 REMARK 3 T13: -0.0673 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.8948 L22: 0.0616 REMARK 3 L33: 5.2720 L12: 0.4440 REMARK 3 L13: -2.0813 L23: 0.2049 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: 1.5357 S13: -0.0604 REMARK 3 S21: -0.6167 S22: -0.1415 S23: 0.5370 REMARK 3 S31: -0.0953 S32: -0.8965 S33: 0.0811 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 277 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3303 -20.2017 29.2030 REMARK 3 T TENSOR REMARK 3 T11: 0.3423 T22: 0.3145 REMARK 3 T33: 0.3196 T12: -0.0277 REMARK 3 T13: 0.0247 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 1.7211 L22: 1.7297 REMARK 3 L33: 2.9783 L12: -0.7044 REMARK 3 L13: 0.2442 L23: -1.1273 REMARK 3 S TENSOR REMARK 3 S11: 0.0915 S12: 0.1018 S13: -0.1695 REMARK 3 S21: -0.1327 S22: 0.0427 S23: 0.0852 REMARK 3 S31: -0.1632 S32: -0.2024 S33: -0.1148 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 334 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4295 -11.0194 13.3485 REMARK 3 T TENSOR REMARK 3 T11: 0.7303 T22: 0.4779 REMARK 3 T33: 0.3675 T12: 0.0036 REMARK 3 T13: 0.0920 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.6188 L22: 1.1442 REMARK 3 L33: 3.5091 L12: -0.8798 REMARK 3 L13: 0.7338 L23: -0.2740 REMARK 3 S TENSOR REMARK 3 S11: -0.0839 S12: 0.0594 S13: 0.3233 REMARK 3 S21: -0.3013 S22: 0.0617 S23: -0.0110 REMARK 3 S31: -0.8140 S32: -0.1635 S33: 0.0520 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 378 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6512 -21.8862 34.1391 REMARK 3 T TENSOR REMARK 3 T11: 0.3082 T22: 0.3010 REMARK 3 T33: 0.3991 T12: -0.0168 REMARK 3 T13: -0.0165 T23: -0.0901 REMARK 3 L TENSOR REMARK 3 L11: 2.6227 L22: 1.8456 REMARK 3 L33: 3.3302 L12: 1.2241 REMARK 3 L13: 0.6654 L23: -0.1472 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: 0.1652 S13: -0.3746 REMARK 3 S21: -0.1658 S22: 0.0988 S23: -0.4575 REMARK 3 S31: -0.0520 S32: 0.6343 S33: -0.1556 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 431 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2264 -8.8834 28.0853 REMARK 3 T TENSOR REMARK 3 T11: 0.5720 T22: 0.4568 REMARK 3 T33: 0.3507 T12: -0.0451 REMARK 3 T13: -0.0359 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 5.2037 L22: 2.6699 REMARK 3 L33: 2.6574 L12: -1.6596 REMARK 3 L13: -0.3160 L23: 0.9760 REMARK 3 S TENSOR REMARK 3 S11: 0.3371 S12: 0.1043 S13: 0.3424 REMARK 3 S21: -0.4502 S22: -0.2062 S23: 0.2076 REMARK 3 S31: -0.7800 S32: -0.3181 S33: -0.1198 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 457 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2547 -11.5062 26.1357 REMARK 3 T TENSOR REMARK 3 T11: 0.6645 T22: 0.6164 REMARK 3 T33: 0.6690 T12: 0.0294 REMARK 3 T13: 0.1271 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 2.4030 L22: 1.8632 REMARK 3 L33: 0.9429 L12: 0.5183 REMARK 3 L13: -0.3637 L23: 0.2660 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.2304 S13: 0.6388 REMARK 3 S21: 0.6460 S22: 0.2555 S23: 0.4927 REMARK 3 S31: -0.5811 S32: -0.2272 S33: -0.1325 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.9L REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 41.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.740 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.48 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2Q59 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1UL PROTEIN-LIGAND COMPLEX SOLUTION REMARK 280 (10MG/ML) WAS MIXED WITH 1UL WELL SOLUTION (2M AMMONIUM SULFATE REMARK 280 AND 0.1M TRIS 8.0), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.81500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.81500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 44.81500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 31.83500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 203 REMARK 465 LEU A 204 REMARK 465 LYS A 240 REMARK 465 THR A 241 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 TYR A 477 REMARK 465 GLN D 203 REMARK 465 LEU D 204 REMARK 465 ASN D 205 REMARK 465 PRO D 206 REMARK 465 GLU D 207 REMARK 465 PRO D 269 REMARK 465 LEU D 270 REMARK 465 GLN D 271 REMARK 465 GLU D 272 REMARK 465 GLN D 273 REMARK 465 SER D 274 REMARK 465 THR D 461 REMARK 465 ASP D 462 REMARK 465 MET D 463 REMARK 465 SER D 464 REMARK 465 LEU D 465 REMARK 465 LEU D 476 REMARK 465 TYR D 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 205 CG OD1 ND2 REMARK 470 PRO A 206 CG CD REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 THR A 242 OG1 CG2 REMARK 470 GLU A 259 CD OE1 OE2 REMARK 470 ILE A 262 CG1 CG2 CD1 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 SER A 274 OG REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 GLN A 283 CG CD OE1 NE2 REMARK 470 LYS A 358 CD CE NZ REMARK 470 SER A 428 OG REMARK 470 GLN A 430 CG CD OE1 NE2 REMARK 470 LYS A 434 CE NZ REMARK 470 GLN A 444 OE1 NE2 REMARK 470 LEU A 452 CD1 CD2 REMARK 470 LYS A 474 CD CE NZ REMARK 470 SER D 208 OG REMARK 470 ARG D 212 NH1 NH2 REMARK 470 LYS D 240 CD CE NZ REMARK 470 THR D 242 OG1 CG2 REMARK 470 LYS D 263 CG CD CE NZ REMARK 470 THR D 268 OG1 CG2 REMARK 470 LYS D 275 CG CD CE NZ REMARK 470 VAL D 277 CG1 CG2 REMARK 470 ARG D 357 CZ NH1 NH2 REMARK 470 LYS D 358 CD CE NZ REMARK 470 LYS D 422 CD CE NZ REMARK 470 GLU D 427 CG CD OE1 OE2 REMARK 470 SER D 429 OG REMARK 470 GLN D 430 CG CD OE1 NE2 REMARK 470 THR D 447 OG1 CG2 REMARK 470 GLU D 448 CG CD OE1 OE2 REMARK 470 GLN D 451 CG CD OE1 NE2 REMARK 470 LEU D 452 CG CD1 CD2 REMARK 470 VAL D 455 CG1 CG2 REMARK 470 LYS D 457 CG CD CE NZ REMARK 470 LYS D 458 CD CE NZ REMARK 470 GLU D 460 CG CD OE1 OE2 REMARK 470 HIS D 466 CG ND1 CD2 CE1 NE2 REMARK 470 GLN D 470 CG CD OE1 NE2 REMARK 470 LYS D 474 CG CD CE NZ REMARK 470 ASP D 475 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 427 54.57 33.76 REMARK 500 ALA D 209 -25.25 70.71 REMARK 500 THR D 242 89.10 -160.37 REMARK 500 ASP D 243 78.99 45.70 REMARK 500 LYS D 244 96.95 62.26 REMARK 500 LYS D 244 98.85 62.26 REMARK 500 LYS D 263 73.67 53.42 REMARK 500 LEU D 393 49.57 -87.29 REMARK 500 ILE D 456 47.31 -100.04 REMARK 500 THR D 459 -139.53 -89.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3JX A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3JX D 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R6S RELATED DB: PDB DBREF 4R2U A 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 4R2U D 203 477 UNP P37231 PPARG_HUMAN 231 505 SEQRES 1 A 275 GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA SEQRES 2 A 275 LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU SEQRES 3 A 275 THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR SEQRES 4 A 275 THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER SEQRES 5 A 275 LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE SEQRES 6 A 275 THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG SEQRES 7 A 275 ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL SEQRES 8 A 275 GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE SEQRES 9 A 275 VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS SEQRES 10 A 275 TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER SEQRES 11 A 275 LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN SEQRES 12 A 275 GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS SEQRES 13 A 275 PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA SEQRES 14 A 275 VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU SEQRES 15 A 275 ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG SEQRES 16 A 275 PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN SEQRES 17 A 275 ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU SEQRES 18 A 275 ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU SEQRES 19 A 275 GLN LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS SEQRES 20 A 275 VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP SEQRES 21 A 275 MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP SEQRES 22 A 275 LEU TYR SEQRES 1 D 275 GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA SEQRES 2 D 275 LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU SEQRES 3 D 275 THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR SEQRES 4 D 275 THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER SEQRES 5 D 275 LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE SEQRES 6 D 275 THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG SEQRES 7 D 275 ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL SEQRES 8 D 275 GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE SEQRES 9 D 275 VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS SEQRES 10 D 275 TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER SEQRES 11 D 275 LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN SEQRES 12 D 275 GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS SEQRES 13 D 275 PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA SEQRES 14 D 275 VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU SEQRES 15 D 275 ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG SEQRES 16 D 275 PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN SEQRES 17 D 275 ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU SEQRES 18 D 275 ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU SEQRES 19 D 275 GLN LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS SEQRES 20 D 275 VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP SEQRES 21 D 275 MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP SEQRES 22 D 275 LEU TYR HET 3JX A 501 41 HET 3JX D 501 41 HETNAM 3JX 4'-[(2,3-DIMETHYL-5-{[(1S)-1-(4-NITROPHENYL) HETNAM 2 3JX ETHYL]CARBAMOYL}-1H-INDOL-1-YL)METHYL]BIPHENYL-2- HETNAM 3 3JX CARBOXYLIC ACID FORMUL 3 3JX 2(C33 H29 N3 O5) FORMUL 5 HOH *173(H2 O) HELIX 1 1 ASN A 205 PHE A 226 1 22 HELIX 2 2 THR A 229 THR A 238 1 10 HELIX 3 3 ASP A 251 GLU A 259 1 9 HELIX 4 4 GLU A 276 SER A 302 1 27 HELIX 5 5 GLY A 305 LEU A 309 5 5 HELIX 6 6 ASP A 310 ALA A 331 1 22 HELIX 7 7 ARG A 350 SER A 355 1 6 HELIX 8 8 PRO A 359 PHE A 363 5 5 HELIX 9 9 MET A 364 ALA A 376 1 13 HELIX 10 10 ASP A 380 LEU A 393 1 14 HELIX 11 11 ASN A 402 HIS A 425 1 24 HELIX 12 12 GLU A 427 GLU A 460 1 34 HELIX 13 13 HIS A 466 LYS A 474 1 9 HELIX 14 14 ASP D 210 PHE D 226 1 17 HELIX 15 15 THR D 229 GLY D 239 1 11 HELIX 16 16 ASP D 251 LYS D 263 1 13 HELIX 17 17 GLU D 276 LYS D 301 1 26 HELIX 18 18 ASP D 310 SER D 332 1 23 HELIX 19 19 SER D 342 GLY D 344 5 3 HELIX 20 20 ARG D 350 SER D 355 1 6 HELIX 21 21 PRO D 359 PHE D 363 5 5 HELIX 22 22 MET D 364 ALA D 376 1 13 HELIX 23 23 ASP D 380 LEU D 393 1 14 HELIX 24 24 ASN D 402 HIS D 425 1 24 HELIX 25 25 GLN D 430 GLN D 454 1 25 HELIX 26 26 PRO D 467 TYR D 473 1 7 SHEET 1 A 4 PHE A 247 ILE A 249 0 SHEET 2 A 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 A 4 GLY A 338 ILE A 341 -1 N ILE A 341 O GLY A 346 SHEET 4 A 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 SHEET 1 B 4 PHE D 247 ILE D 249 0 SHEET 2 B 4 GLY D 346 THR D 349 1 O THR D 349 N ILE D 249 SHEET 3 B 4 GLY D 338 ILE D 341 -1 N VAL D 339 O MET D 348 SHEET 4 B 4 MET D 334 ASN D 335 -1 N ASN D 335 O GLY D 338 CISPEP 1 LYS A 261 ILE A 262 0 -5.84 CISPEP 2 LYS A 358 PRO A 359 0 1.87 CISPEP 3 SER D 208 ALA D 209 0 -4.51 CISPEP 4 THR D 242 ASP D 243 0 10.81 CISPEP 5 LYS D 358 PRO D 359 0 3.51 SITE 1 AC1 19 PHE A 282 GLY A 284 CYS A 285 GLN A 286 SITE 2 AC1 19 ARG A 288 SER A 289 HIS A 323 TYR A 327 SITE 3 AC1 19 LEU A 330 ILE A 341 SER A 342 PHE A 363 SITE 4 AC1 19 MET A 364 LYS A 367 HIS A 449 LEU A 453 SITE 5 AC1 19 LEU A 465 TYR A 473 HOH A 671 SITE 1 AC2 15 HIS D 266 ILE D 281 PHE D 282 GLN D 286 SITE 2 AC2 15 ARG D 288 SER D 289 ILE D 326 TYR D 327 SITE 3 AC2 15 LEU D 330 ILE D 341 SER D 342 MET D 364 SITE 4 AC2 15 LYS D 367 HIS D 449 LEU D 453 CRYST1 89.630 63.670 118.930 90.00 103.43 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011157 0.000000 0.002664 0.00000 SCALE2 0.000000 0.015706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008645 0.00000