HEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-AUG-14 4R3C TITLE CRYSTAL STRUCTURE OF P38 ALPHA MAP KINASE IN COMPLEX WITH A NOVEL TITLE 2 ISOFORM SELECTIVE DRUG CANDIDATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 14, MAPK 14, CYTOKINE SUPPRESSIVE ANTI- COMPND 5 INFLAMMATORY DRUG-BINDING PROTEIN, CSAID-BINDING PROTEIN, CSBP, MAP COMPND 6 KINASE MXI2, MAX-INTERACTING PROTEIN 2, MITOGEN-ACTIVATED PROTEIN COMPND 7 KINASE P38 ALPHA, MAP KINASE P38 ALPHA, STRESS-ACTIVATED PROTEIN COMPND 8 KINASE 2A, SAPK2A; COMPND 9 EC: 2.7.11.24; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK14, CSBP, CSBP1, CSBP2, CSPB1, MXI2, SAPK2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SERINE/THREONINE-PROTEIN KINASE, PROTEIN KINASE DOMAIN, TRANSFERASE, KEYWDS 2 ATP BINDING, PHOSPHORYLATION, CYTOSOL, TRANSFERASE-TRANSFERASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.L.GRUM-TOKARS,G.MINASOV,S.M.ROY,W.F.ANDERSON,D.M.WATTERSON REVDAT 3 22-NOV-17 4R3C 1 REMARK REVDAT 2 01-JUL-15 4R3C 1 JRNL REVDAT 1 25-FEB-15 4R3C 0 JRNL AUTH S.M.ROY,V.L.GRUM-TOKARS,J.P.SCHAVOCKY,F.SAEED, JRNL AUTH 2 A.STANISZEWSKI,A.F.TEICH,O.ARANCIO,A.D.BACHSTETTER, JRNL AUTH 3 S.J.WEBSTER,L.J.VAN ELDIK,G.MINASOV,W.F.ANDERSON, JRNL AUTH 4 J.C.PELLETIER,D.M.WATTERSON JRNL TITL TARGETING HUMAN CENTRAL NERVOUS SYSTEM PROTEIN KINASES: AN JRNL TITL 2 ISOFORM SELECTIVE P38 ALPHA MAPK INHIBITOR THAT ATTENUATES JRNL TITL 3 DISEASE PROGRESSION IN ALZHEIMER'S DISEASE MOUSE MODELS. JRNL REF ACS CHEM NEUROSCI V. 6 666 2015 JRNL REFN ESSN 1948-7193 JRNL PMID 25676389 JRNL DOI 10.1021/ACSCHEMNEURO.5B00002 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 23018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1241 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1541 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2720 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46000 REMARK 3 B22 (A**2) : -1.49000 REMARK 3 B33 (A**2) : 2.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.436 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2992 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2833 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4080 ; 1.397 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6512 ; 0.708 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 357 ; 2.618 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;30.021 ;24.184 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ; 9.888 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;12.783 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 441 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3398 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 709 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1404 ; 2.301 ; 2.907 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1403 ; 2.302 ; 2.905 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1769 ; 3.437 ; 4.344 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1770 ; 3.436 ; 4.346 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1588 ; 2.953 ; 3.323 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1589 ; 2.952 ; 3.324 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2312 ; 4.674 ; 4.844 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3532 ; 7.046 ;24.661 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3498 ; 7.020 ;24.483 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 50.2569 74.0330 21.2532 REMARK 3 T TENSOR REMARK 3 T11: 0.0919 T22: 0.0748 REMARK 3 T33: 0.1413 T12: 0.0233 REMARK 3 T13: 0.0729 T23: 0.0790 REMARK 3 L TENSOR REMARK 3 L11: 7.6703 L22: 5.5228 REMARK 3 L33: 3.4709 L12: 0.7596 REMARK 3 L13: -0.3208 L23: -1.5839 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.2331 S13: 0.1784 REMARK 3 S21: 0.3770 S22: 0.2717 S23: 0.6783 REMARK 3 S31: -0.3523 S32: -0.1161 S33: -0.2639 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 60.2244 80.3533 10.4699 REMARK 3 T TENSOR REMARK 3 T11: 0.1041 T22: 0.0267 REMARK 3 T33: 0.0427 T12: 0.0050 REMARK 3 T13: -0.0020 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.4153 L22: 4.4999 REMARK 3 L33: 2.5495 L12: -1.3789 REMARK 3 L13: -0.2359 L23: -2.2938 REMARK 3 S TENSOR REMARK 3 S11: 0.2000 S12: 0.0404 S13: 0.0762 REMARK 3 S21: 0.1333 S22: -0.0293 S23: 0.1294 REMARK 3 S31: -0.2613 S32: -0.0920 S33: -0.1708 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 69.9484 73.0541 17.6559 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.0596 REMARK 3 T33: 0.0172 T12: 0.0025 REMARK 3 T13: 0.0035 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 4.2955 L22: 1.4059 REMARK 3 L33: 1.0113 L12: 0.4487 REMARK 3 L13: 0.1235 L23: -0.6418 REMARK 3 S TENSOR REMARK 3 S11: 0.0892 S12: -0.1273 S13: -0.0667 REMARK 3 S21: 0.0347 S22: -0.0835 S23: 0.0811 REMARK 3 S31: 0.0595 S32: -0.0111 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 73.9125 76.0438 21.9393 REMARK 3 T TENSOR REMARK 3 T11: 0.1093 T22: 0.1275 REMARK 3 T33: 0.0310 T12: -0.0105 REMARK 3 T13: 0.0268 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 6.1066 L22: 7.4795 REMARK 3 L33: 0.9907 L12: 2.9830 REMARK 3 L13: 0.5595 L23: 1.2590 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: -0.3149 S13: 0.1605 REMARK 3 S21: 0.2906 S22: -0.1964 S23: 0.3300 REMARK 3 S31: 0.1431 S32: 0.0014 S33: 0.1353 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 90.9184 82.3477 17.9495 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.1209 REMARK 3 T33: 0.0762 T12: -0.0103 REMARK 3 T13: -0.0218 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 2.5377 L22: 3.1416 REMARK 3 L33: 0.5229 L12: 0.5734 REMARK 3 L13: -0.2011 L23: 0.0633 REMARK 3 S TENSOR REMARK 3 S11: 0.0566 S12: -0.2080 S13: 0.0671 REMARK 3 S21: 0.1966 S22: -0.0777 S23: -0.3815 REMARK 3 S31: -0.0142 S32: 0.1817 S33: 0.0211 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 310 A 352 REMARK 3 ORIGIN FOR THE GROUP (A): 63.9048 77.0799 3.7274 REMARK 3 T TENSOR REMARK 3 T11: 0.1518 T22: 0.0945 REMARK 3 T33: 0.0174 T12: 0.0167 REMARK 3 T13: -0.0420 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 3.9623 L22: 5.7101 REMARK 3 L33: 1.6634 L12: -2.6402 REMARK 3 L13: 0.7886 L23: -2.0790 REMARK 3 S TENSOR REMARK 3 S11: 0.1265 S12: 0.4536 S13: -0.0414 REMARK 3 S21: -0.4061 S22: -0.0530 S23: 0.1673 REMARK 3 S31: 0.1060 S32: -0.1356 S33: -0.0734 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4R3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 23.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : 0.59900 REMARK 200 FOR SHELL : 2.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PDB ENTRY 4F9W REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.075M AMMONIUM ACETATE, 0.1M BISTRIS REMARK 280 (PH 5.5), 16% PEG 10000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.90400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.25600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.90400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.92500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.25600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 VAL A -12 REMARK 465 ASP A -11 REMARK 465 LEU A -10 REMARK 465 GLY A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLY A 170 REMARK 465 LEU A 171 REMARK 465 ALA A 172 REMARK 465 ARG A 173 REMARK 465 HIS A 174 REMARK 465 THR A 175 REMARK 465 ASP A 176 REMARK 465 ASP A 177 REMARK 465 GLU A 178 REMARK 465 MET A 179 REMARK 465 THR A 180 REMARK 465 GLY A 181 REMARK 465 TYR A 182 REMARK 465 LEU A 353 REMARK 465 ASP A 354 REMARK 465 GLN A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 MET A 358 REMARK 465 GLU A 359 REMARK 465 SER A 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 19.78 56.39 REMARK 500 ARG A 57 55.25 37.33 REMARK 500 ARG A 149 -14.57 81.10 REMARK 500 LEU A 289 55.30 -93.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GG5 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3GF A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3GF A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F9W RELATED DB: PDB REMARK 900 P38 ALPHA MAPK IN COMPLEX WITH N,N-DIMETHYL-6-(NAPHTHALEN-2-YL)-5- REMARK 900 (PYRIDIN- 4-YL)PYRIDAZIN-3-AMINE REMARK 900 RELATED ID: 4F9Y RELATED DB: PDB REMARK 900 P38 ALPHA MAPK IN COMPLEX WITH N,N-DIMETHYL-6-(NAPHTHALEN-1-YL)-5- REMARK 900 (PYRIDIN- 4-YL)PYRIDAZIN-3-AMINE REMARK 900 RELATED ID: 4EWQ RELATED DB: PDB REMARK 900 P38 ALPHA MAPK IN COMPLEX WITH 3-PHENYL-4-(PYRIDIN-4-YL)-6-[4- REMARK 900 (PYRIMIDIN- 2-YL)PIPERAZIN-1-YL]PYRIDAZINE DBREF 4R3C A 2 360 UNP Q16539 MK14_HUMAN 2 360 SEQADV 4R3C MET A -22 UNP Q16539 EXPRESSION TAG SEQADV 4R3C HIS A -21 UNP Q16539 EXPRESSION TAG SEQADV 4R3C HIS A -20 UNP Q16539 EXPRESSION TAG SEQADV 4R3C HIS A -19 UNP Q16539 EXPRESSION TAG SEQADV 4R3C HIS A -18 UNP Q16539 EXPRESSION TAG SEQADV 4R3C HIS A -17 UNP Q16539 EXPRESSION TAG SEQADV 4R3C HIS A -16 UNP Q16539 EXPRESSION TAG SEQADV 4R3C SER A -15 UNP Q16539 EXPRESSION TAG SEQADV 4R3C SER A -14 UNP Q16539 EXPRESSION TAG SEQADV 4R3C GLY A -13 UNP Q16539 EXPRESSION TAG SEQADV 4R3C VAL A -12 UNP Q16539 EXPRESSION TAG SEQADV 4R3C ASP A -11 UNP Q16539 EXPRESSION TAG SEQADV 4R3C LEU A -10 UNP Q16539 EXPRESSION TAG SEQADV 4R3C GLY A -9 UNP Q16539 EXPRESSION TAG SEQADV 4R3C THR A -8 UNP Q16539 EXPRESSION TAG SEQADV 4R3C GLU A -7 UNP Q16539 EXPRESSION TAG SEQADV 4R3C ASN A -6 UNP Q16539 EXPRESSION TAG SEQADV 4R3C LEU A -5 UNP Q16539 EXPRESSION TAG SEQADV 4R3C TYR A -4 UNP Q16539 EXPRESSION TAG SEQADV 4R3C PHE A -3 UNP Q16539 EXPRESSION TAG SEQADV 4R3C GLN A -2 UNP Q16539 EXPRESSION TAG SEQADV 4R3C SER A -1 UNP Q16539 EXPRESSION TAG SEQADV 4R3C ASN A 0 UNP Q16539 EXPRESSION TAG SEQADV 4R3C ALA A 1 UNP Q16539 EXPRESSION TAG SEQRES 1 A 383 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 383 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA SER GLN SEQRES 3 A 383 GLU ARG PRO THR PHE TYR ARG GLN GLU LEU ASN LYS THR SEQRES 4 A 383 ILE TRP GLU VAL PRO GLU ARG TYR GLN ASN LEU SER PRO SEQRES 5 A 383 VAL GLY SER GLY ALA TYR GLY SER VAL CYS ALA ALA PHE SEQRES 6 A 383 ASP THR LYS THR GLY LEU ARG VAL ALA VAL LYS LYS LEU SEQRES 7 A 383 SER ARG PRO PHE GLN SER ILE ILE HIS ALA LYS ARG THR SEQRES 8 A 383 TYR ARG GLU LEU ARG LEU LEU LYS HIS MET LYS HIS GLU SEQRES 9 A 383 ASN VAL ILE GLY LEU LEU ASP VAL PHE THR PRO ALA ARG SEQRES 10 A 383 SER LEU GLU GLU PHE ASN ASP VAL TYR LEU VAL THR HIS SEQRES 11 A 383 LEU MET GLY ALA ASP LEU ASN ASN ILE VAL LYS CYS GLN SEQRES 12 A 383 LYS LEU THR ASP ASP HIS VAL GLN PHE LEU ILE TYR GLN SEQRES 13 A 383 ILE LEU ARG GLY LEU LYS TYR ILE HIS SER ALA ASP ILE SEQRES 14 A 383 ILE HIS ARG ASP LEU LYS PRO SER ASN LEU ALA VAL ASN SEQRES 15 A 383 GLU ASP CME GLU LEU LYS ILE LEU ASP PHE GLY LEU ALA SEQRES 16 A 383 ARG HIS THR ASP ASP GLU MET THR GLY TYR VAL ALA THR SEQRES 17 A 383 ARG TRP TYR ARG ALA PRO GLU ILE MET LEU ASN TRP MET SEQRES 18 A 383 HIS TYR ASN GLN THR VAL ASP ILE TRP SER VAL GLY CYS SEQRES 19 A 383 ILE MET ALA GLU LEU LEU THR GLY ARG THR LEU PHE PRO SEQRES 20 A 383 GLY THR ASP HIS ILE ASP GLN LEU LYS LEU ILE LEU ARG SEQRES 21 A 383 LEU VAL GLY THR PRO GLY ALA GLU LEU LEU LYS LYS ILE SEQRES 22 A 383 SER SER GLU SER ALA ARG ASN TYR ILE GLN SER LEU THR SEQRES 23 A 383 GLN MET PRO LYS MET ASN PHE ALA ASN VAL PHE ILE GLY SEQRES 24 A 383 ALA ASN PRO LEU ALA VAL ASP LEU LEU GLU LYS MET LEU SEQRES 25 A 383 VAL LEU ASP SER ASP LYS ARG ILE THR ALA ALA GLN ALA SEQRES 26 A 383 LEU ALA HIS ALA TYR PHE ALA GLN TYR HIS ASP PRO ASP SEQRES 27 A 383 ASP GLU PRO VAL ALA ASP PRO TYR ASP GLN SER PHE GLU SEQRES 28 A 383 SER ARG ASP LEU LEU ILE ASP GLU TRP LYS SER LEU THR SEQRES 29 A 383 TYR ASP GLU VAL ILE SER PHE VAL PRO PRO PRO LEU ASP SEQRES 30 A 383 GLN GLU GLU MET GLU SER MODRES 4R3C CME A 162 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME A 162 10 HET GG5 A 401 18 HET 3GF A 402 29 HET 3GF A 403 29 HET CL A 404 2 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM GG5 4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE HETNAM 3GF 6-(4-METHYLPIPERAZIN-1-YL)-3-(NAPHTHALEN-2-YL)-4- HETNAM 2 3GF (PYRIDIN-4-YL)PYRIDAZINE HETNAM CL CHLORIDE ION FORMUL 1 CME C5 H11 N O3 S2 FORMUL 2 GG5 C14 H10 F N3 FORMUL 3 3GF 2(C24 H23 N5) FORMUL 5 CL CL 1- FORMUL 6 HOH *146(H2 O) HELIX 1 1 SER A 61 MET A 78 1 18 HELIX 2 2 SER A 95 PHE A 99 5 5 HELIX 3 3 LEU A 113 GLN A 120 1 8 HELIX 4 4 THR A 123 ALA A 144 1 22 HELIX 5 5 LYS A 152 SER A 154 5 3 HELIX 6 6 ALA A 184 ARG A 189 5 6 HELIX 7 7 ALA A 190 LEU A 195 1 6 HELIX 8 8 THR A 203 GLY A 219 1 17 HELIX 9 9 ASP A 227 GLY A 240 1 14 HELIX 10 10 GLY A 243 LYS A 248 1 6 HELIX 11 11 SER A 252 LEU A 262 1 11 HELIX 12 12 ASN A 269 PHE A 274 1 6 HELIX 13 13 ASN A 278 LEU A 289 1 12 HELIX 14 14 ASP A 292 ARG A 296 5 5 HELIX 15 15 THR A 298 ALA A 304 1 7 HELIX 16 16 HIS A 305 ALA A 309 5 5 HELIX 17 17 ASP A 313 GLU A 317 5 5 HELIX 18 18 GLN A 325 ARG A 330 5 6 HELIX 19 19 LEU A 333 PHE A 348 1 16 SHEET 1 A 2 PHE A 8 GLU A 12 0 SHEET 2 A 2 ILE A 17 PRO A 21 -1 O TRP A 18 N GLN A 11 SHEET 1 B 5 TYR A 24 SER A 32 0 SHEET 2 B 5 GLY A 36 ASP A 43 -1 O ALA A 40 N SER A 28 SHEET 3 B 5 LEU A 48 LEU A 55 -1 O VAL A 52 N CYS A 39 SHEET 4 B 5 TYR A 103 HIS A 107 -1 O THR A 106 N ALA A 51 SHEET 5 B 5 ASP A 88 PHE A 90 -1 N ASP A 88 O VAL A 105 SHEET 1 C 3 ALA A 111 ASP A 112 0 SHEET 2 C 3 LEU A 156 VAL A 158 -1 O VAL A 158 N ALA A 111 SHEET 3 C 3 LEU A 164 ILE A 166 -1 O LYS A 165 N ALA A 157 LINK C ASP A 161 N CME A 162 1555 1555 1.34 LINK C CME A 162 N GLU A 163 1555 1555 1.33 SITE 1 AC1 11 PRO A 191 GLU A 192 LEU A 195 TRP A 197 SITE 2 AC1 11 PRO A 242 LEU A 246 LYS A 249 ILE A 250 SITE 3 AC1 11 ILE A 259 LEU A 291 SER A 293 SITE 1 AC2 11 ALA A 51 LYS A 53 LEU A 104 VAL A 105 SITE 2 AC2 11 THR A 106 HIS A 107 MET A 109 SER A 154 SITE 3 AC2 11 LEU A 167 ASP A 168 HOH A 599 SITE 1 AC3 8 GLU A 22 ARG A 23 THR A 44 ILE A 229 SITE 2 AC3 8 SER A 254 TYR A 258 ASP A 283 HOH A 571 SITE 1 AC4 3 GLY A 31 SER A 32 GLY A 33 CRYST1 65.850 74.512 77.808 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015186 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013421 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012852 0.00000