data_4R49 # _entry.id 4R49 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4R49 pdb_00004r49 10.2210/pdb4r49/pdb NDB NA3149 ? ? RCSB RCSB086879 ? ? WWPDB D_1000086879 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4R44 'Racemic crystal structure of a tetramolecular DNA G-quadruplex' unspecified PDB 4R45 'Racemic crystal structure of a bimolecular DNA G-quadruplex (P-1)' unspecified PDB 4R47 'Racemic crystal structure of a bimolecular DNA G-quadruplex (P21/n)' unspecified PDB 4R48 'Racemic crystal structure of a calcium-bound DNA four-way junction' unspecified PDB 4R4A 'Racemic crystal structure of a cobalt-bound B-DNA duplex' unspecified PDB 4R4D 'Racemic crystal structure of a magnesium-bound B-DNA duplex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4R49 _pdbx_database_status.recvd_initial_deposition_date 2014-08-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mandal, P.K.' 1 'Collie, G.W.' 2 'Kauffmann, B.' 3 'Huc, I.' 4 # _citation.id primary _citation.title 'Racemic DNA crystallography.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 53 _citation.page_first 14424 _citation.page_last 14427 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25358289 _citation.pdbx_database_id_DOI 10.1002/anie.201409014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mandal, P.K.' 1 ? primary 'Collie, G.W.' 2 ? primary 'Kauffmann, B.' 3 ? primary 'Huc, I.' 4 ? # _cell.entry_id 4R49 _cell.length_a 23.263 _cell.length_b 33.604 _cell.length_c 36.820 _cell.angle_alpha 103.32 _cell.angle_beta 101.02 _cell.angle_gamma 109.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4R49 _symmetry.space_group_name_H-M 'P -1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'" 3045.992 2 ? ? ? 'B-DNA Duplex' 2 non-polymer syn 'CALCIUM ION' 40.078 7 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 water nat water 18.015 167 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGGTACCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4R49 _struct_ref.pdbx_db_accession 4R49 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code CCGGTACCGG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4R49 A 1 ? 10 ? 4R49 1 ? 10 ? 1 10 2 1 4R49 B 1 ? 10 ? 4R49 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # _exptl.entry_id 4R49 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_percent_sol 40.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;1 mM DNA, 50 mM sodium cacodylate, 2 M calcium chloride, 1 mM spermine, 40% v/v MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 2M-F' _diffrn_detector.pdbx_collection_date 2014-06-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.873 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.873 # _reflns.entry_id 4R49 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 34.25 _reflns.d_resolution_high 1.28 _reflns.number_obs 23975 _reflns.number_all 25176 _reflns.percent_possible_obs 95.23 _reflns.pdbx_Rmerge_I_obs 0.0372 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.69 _reflns.B_iso_Wilson_estimate 47.43 _reflns.pdbx_redundancy 1.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.28 _reflns_shell.d_res_low 1.32 _reflns_shell.percent_possible_all 91.68 _reflns_shell.Rmerge_I_obs 0.2656 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.39 _reflns_shell.pdbx_redundancy 1.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4R49 _refine.ls_number_reflns_obs 22744 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.25 _refine.ls_d_res_high 1.28 _refine.ls_percent_reflns_obs 95.23 _refine.ls_R_factor_obs 0.21889 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21655 _refine.ls_R_factor_R_free 0.25957 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1230 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 14.318 _refine.aniso_B[1][1] 0.61 _refine.aniso_B[2][2] -0.47 _refine.aniso_B[3][3] 0.28 _refine.aniso_B[1][2] -0.61 _refine.aniso_B[1][3] 0.54 _refine.aniso_B[2][3] -0.33 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3R86' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.055 _refine.overall_SU_ML 0.027 _refine.overall_SU_B 1.437 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 167 _refine_hist.number_atoms_total 580 _refine_hist.d_res_high 1.28 _refine_hist.d_res_low 34.25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.013 0.011 ? 452 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.854 1.157 ? 694 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.110 0.200 ? 60 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.031 0.020 ? 210 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 7.152 3.000 ? 452 ? 'X-RAY DIFFRACTION' r_sphericity_free 25.398 5.000 ? 6 ? 'X-RAY DIFFRACTION' r_sphericity_bonded 12.844 5.000 ? 574 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.280 _refine_ls_shell.d_res_low 1.313 _refine_ls_shell.number_reflns_R_work 1638 _refine_ls_shell.R_factor_R_work 0.325 _refine_ls_shell.percent_reflns_obs 91.14 _refine_ls_shell.R_factor_R_free 0.392 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 79 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4R49 _struct.title 'Racemic crystal structure of a calcium-bound B-DNA duplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R49 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'racemic DNA, racemates, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 4 ? M N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DT 5 OP1 ? ? ? 1_555 D CA . CA ? ? A DT 5 A CA 102 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc2 metalc ? ? A DT 5 OP2 ? ? ? 1_555 F NA . NA ? ? A DT 5 A NA 104 1_555 ? ? ? ? ? ? ? 2.424 ? ? metalc3 metalc ? ? C CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 101 A HOH 201 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc4 metalc ? ? C CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 101 A HOH 202 1_555 ? ? ? ? ? ? ? 2.463 ? ? metalc5 metalc ? ? C CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 101 A HOH 203 1_555 ? ? ? ? ? ? ? 2.501 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 101 A HOH 209 1_555 ? ? ? ? ? ? ? 2.439 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 101 A HOH 217 1_555 ? ? ? ? ? ? ? 2.434 ? ? metalc8 metalc ? ? D CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 102 A HOH 205 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc9 metalc ? ? D CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 102 A HOH 208 1_555 ? ? ? ? ? ? ? 2.442 ? ? metalc10 metalc ? ? D CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 102 A HOH 216 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc11 metalc ? ? D CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 102 A HOH 295 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc12 metalc ? ? E CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 103 A HOH 214 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc13 metalc ? ? E CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 103 A HOH 233 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc14 metalc ? ? E CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 103 A HOH 238 1_555 ? ? ? ? ? ? ? 2.500 ? ? metalc15 metalc ? ? E CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 103 A HOH 239 1_555 ? ? ? ? ? ? ? 2.433 ? ? metalc16 metalc ? ? E CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 103 A HOH 243 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc17 metalc ? ? F NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 104 A HOH 274 1_555 ? ? ? ? ? ? ? 2.573 ? ? metalc18 metalc ? ? B DG 4 OP1 ? ? ? 1_555 K NA . NA ? ? B DG 4 B NA 105 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc19 metalc ? ? B DT 5 OP1 ? ? ? 1_555 G CA . CA ? ? B DT 5 B CA 101 1_555 ? ? ? ? ? ? ? 2.323 ? ? metalc20 metalc ? ? G CA . CA ? ? ? 1_555 M HOH . O ? ? B CA 101 B HOH 216 1_555 ? ? ? ? ? ? ? 2.415 ? ? metalc21 metalc ? ? G CA . CA ? ? ? 1_555 M HOH . O ? ? B CA 101 B HOH 261 1_555 ? ? ? ? ? ? ? 2.468 ? ? metalc22 metalc ? ? H CA . CA ? ? ? 1_555 M HOH . O ? ? B CA 102 B HOH 220 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc23 metalc ? ? H CA . CA ? ? ? 1_555 M HOH . O ? ? B CA 102 B HOH 227 1_555 ? ? ? ? ? ? ? 2.428 ? ? metalc24 metalc ? ? H CA . CA ? ? ? 1_555 M HOH . O ? ? B CA 102 B HOH 254 1_555 ? ? ? ? ? ? ? 2.462 ? ? metalc25 metalc ? ? I CA . CA ? ? ? 1_555 M HOH . O ? ? B CA 103 B HOH 201 1_555 ? ? ? ? ? ? ? 2.465 ? ? metalc26 metalc ? ? I CA . CA ? ? ? 1_555 M HOH . O ? ? B CA 103 B HOH 203 1_555 ? ? ? ? ? ? ? 2.356 ? ? metalc27 metalc ? ? I CA . CA ? ? ? 1_555 M HOH . O ? ? B CA 103 B HOH 205 1_555 ? ? ? ? ? ? ? 2.471 ? ? metalc28 metalc ? ? J CA . CA ? ? ? 1_555 M HOH . O ? ? B CA 104 B HOH 245 1_555 ? ? ? ? ? ? ? 2.853 ? ? metalc29 metalc ? ? K NA . NA ? ? ? 1_555 M HOH . O ? ? B NA 105 B HOH 225 1_555 ? ? ? ? ? ? ? 2.375 ? ? metalc30 metalc ? ? K NA . NA ? ? ? 1_555 M HOH . O ? ? B NA 105 B HOH 238 1_555 ? ? ? ? ? ? ? 2.229 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 101 ? 5 'BINDING SITE FOR RESIDUE CA A 101' AC2 Software A CA 102 ? 5 'BINDING SITE FOR RESIDUE CA A 102' AC3 Software A CA 103 ? 5 'BINDING SITE FOR RESIDUE CA A 103' AC4 Software A NA 104 ? 2 'BINDING SITE FOR RESIDUE NA A 104' AC5 Software B CA 101 ? 3 'BINDING SITE FOR RESIDUE CA B 101' AC6 Software B CA 102 ? 3 'BINDING SITE FOR RESIDUE CA B 102' AC7 Software B CA 103 ? 3 'BINDING SITE FOR RESIDUE CA B 103' AC8 Software B CA 104 ? 2 'BINDING SITE FOR RESIDUE CA B 104' AC9 Software B NA 105 ? 3 'BINDING SITE FOR RESIDUE NA B 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH L . ? HOH A 201 . ? 1_555 ? 2 AC1 5 HOH L . ? HOH A 202 . ? 1_555 ? 3 AC1 5 HOH L . ? HOH A 203 . ? 1_555 ? 4 AC1 5 HOH L . ? HOH A 209 . ? 1_555 ? 5 AC1 5 HOH L . ? HOH A 217 . ? 1_555 ? 6 AC2 5 DT A 5 ? DT A 5 . ? 1_555 ? 7 AC2 5 HOH L . ? HOH A 205 . ? 1_555 ? 8 AC2 5 HOH L . ? HOH A 208 . ? 1_555 ? 9 AC2 5 HOH L . ? HOH A 216 . ? 1_555 ? 10 AC2 5 HOH L . ? HOH A 295 . ? 1_555 ? 11 AC3 5 HOH L . ? HOH A 214 . ? 1_555 ? 12 AC3 5 HOH L . ? HOH A 233 . ? 1_555 ? 13 AC3 5 HOH L . ? HOH A 238 . ? 1_555 ? 14 AC3 5 HOH L . ? HOH A 239 . ? 1_555 ? 15 AC3 5 HOH L . ? HOH A 243 . ? 1_555 ? 16 AC4 2 DT A 5 ? DT A 5 . ? 1_555 ? 17 AC4 2 HOH L . ? HOH A 274 . ? 1_555 ? 18 AC5 3 DT B 5 ? DT B 5 . ? 1_555 ? 19 AC5 3 HOH M . ? HOH B 216 . ? 1_555 ? 20 AC5 3 HOH M . ? HOH B 261 . ? 1_555 ? 21 AC6 3 HOH M . ? HOH B 220 . ? 1_555 ? 22 AC6 3 HOH M . ? HOH B 227 . ? 1_555 ? 23 AC6 3 HOH M . ? HOH B 254 . ? 1_555 ? 24 AC7 3 HOH M . ? HOH B 201 . ? 1_555 ? 25 AC7 3 HOH M . ? HOH B 203 . ? 1_555 ? 26 AC7 3 HOH M . ? HOH B 205 . ? 1_555 ? 27 AC8 2 DC B 8 ? DC B 8 . ? 1_555 ? 28 AC8 2 HOH M . ? HOH B 245 . ? 1_555 ? 29 AC9 3 DG B 4 ? DG B 4 . ? 1_555 ? 30 AC9 3 HOH M . ? HOH B 225 . ? 1_555 ? 31 AC9 3 HOH M . ? HOH B 238 . ? 1_555 ? # _database_PDB_matrix.entry_id 4R49 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4R49 _atom_sites.fract_transf_matrix[1][1] 0.042987 _atom_sites.fract_transf_matrix[1][2] 0.015457 _atom_sites.fract_transf_matrix[1][3] 0.014040 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031624 _atom_sites.fract_transf_matrix[2][3] 0.010658 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029198 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DC 2 2 2 DC DC B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DT 5 5 5 DT DT B . n B 1 6 DA 6 6 6 DA DA B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DC 8 8 8 DC DC B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DG 10 10 10 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 101 1 CA CA A . D 2 CA 1 102 3 CA CA A . E 2 CA 1 103 4 CA CA A . F 3 NA 1 104 2 NA NA A . G 2 CA 1 101 2 CA CA B . H 2 CA 1 102 5 CA CA B . I 2 CA 1 103 6 CA CA B . J 2 CA 1 104 7 CA CA B . K 3 NA 1 105 1 NA NA B . L 4 HOH 1 201 1 HOH HOH A . L 4 HOH 2 202 3 HOH HOH A . L 4 HOH 3 203 5 HOH HOH A . L 4 HOH 4 204 8 HOH HOH A . L 4 HOH 5 205 9 HOH HOH A . L 4 HOH 6 206 10 HOH HOH A . L 4 HOH 7 207 11 HOH HOH A . L 4 HOH 8 208 12 HOH HOH A . L 4 HOH 9 209 13 HOH HOH A . L 4 HOH 10 210 15 HOH HOH A . L 4 HOH 11 211 16 HOH HOH A . L 4 HOH 12 212 20 HOH HOH A . L 4 HOH 13 213 21 HOH HOH A . L 4 HOH 14 214 23 HOH HOH A . L 4 HOH 15 215 24 HOH HOH A . L 4 HOH 16 216 25 HOH HOH A . L 4 HOH 17 217 31 HOH HOH A . L 4 HOH 18 218 32 HOH HOH A . L 4 HOH 19 219 33 HOH HOH A . L 4 HOH 20 220 34 HOH HOH A . L 4 HOH 21 221 35 HOH HOH A . L 4 HOH 22 222 37 HOH HOH A . L 4 HOH 23 223 40 HOH HOH A . L 4 HOH 24 224 43 HOH HOH A . L 4 HOH 25 225 44 HOH HOH A . L 4 HOH 26 226 47 HOH HOH A . L 4 HOH 27 227 50 HOH HOH A . L 4 HOH 28 228 52 HOH HOH A . L 4 HOH 29 229 53 HOH HOH A . L 4 HOH 30 230 54 HOH HOH A . L 4 HOH 31 231 56 HOH HOH A . L 4 HOH 32 232 58 HOH HOH A . L 4 HOH 33 233 61 HOH HOH A . L 4 HOH 34 234 62 HOH HOH A . L 4 HOH 35 235 64 HOH HOH A . L 4 HOH 36 236 66 HOH HOH A . L 4 HOH 37 237 67 HOH HOH A . L 4 HOH 38 238 69 HOH HOH A . L 4 HOH 39 239 71 HOH HOH A . L 4 HOH 40 240 72 HOH HOH A . L 4 HOH 41 241 74 HOH HOH A . L 4 HOH 42 242 75 HOH HOH A . L 4 HOH 43 243 77 HOH HOH A . L 4 HOH 44 244 78 HOH HOH A . L 4 HOH 45 245 79 HOH HOH A . L 4 HOH 46 246 80 HOH HOH A . L 4 HOH 47 247 81 HOH HOH A . L 4 HOH 48 248 85 HOH HOH A . L 4 HOH 49 249 86 HOH HOH A . L 4 HOH 50 250 89 HOH HOH A . L 4 HOH 51 251 91 HOH HOH A . L 4 HOH 52 252 92 HOH HOH A . L 4 HOH 53 253 93 HOH HOH A . L 4 HOH 54 254 95 HOH HOH A . L 4 HOH 55 255 98 HOH HOH A . L 4 HOH 56 256 100 HOH HOH A . L 4 HOH 57 257 101 HOH HOH A . L 4 HOH 58 258 104 HOH HOH A . L 4 HOH 59 259 105 HOH HOH A . L 4 HOH 60 260 109 HOH HOH A . L 4 HOH 61 261 110 HOH HOH A . L 4 HOH 62 262 111 HOH HOH A . L 4 HOH 63 263 115 HOH HOH A . L 4 HOH 64 264 116 HOH HOH A . L 4 HOH 65 265 120 HOH HOH A . L 4 HOH 66 266 121 HOH HOH A . L 4 HOH 67 267 122 HOH HOH A . L 4 HOH 68 268 123 HOH HOH A . L 4 HOH 69 269 124 HOH HOH A . L 4 HOH 70 270 125 HOH HOH A . L 4 HOH 71 271 126 HOH HOH A . L 4 HOH 72 272 127 HOH HOH A . L 4 HOH 73 273 128 HOH HOH A . L 4 HOH 74 274 130 HOH HOH A . L 4 HOH 75 275 131 HOH HOH A . L 4 HOH 76 276 133 HOH HOH A . L 4 HOH 77 277 134 HOH HOH A . L 4 HOH 78 278 135 HOH HOH A . L 4 HOH 79 279 139 HOH HOH A . L 4 HOH 80 280 142 HOH HOH A . L 4 HOH 81 281 143 HOH HOH A . L 4 HOH 82 282 144 HOH HOH A . L 4 HOH 83 283 147 HOH HOH A . L 4 HOH 84 284 148 HOH HOH A . L 4 HOH 85 285 152 HOH HOH A . L 4 HOH 86 286 154 HOH HOH A . L 4 HOH 87 287 155 HOH HOH A . L 4 HOH 88 288 156 HOH HOH A . L 4 HOH 89 289 158 HOH HOH A . L 4 HOH 90 290 160 HOH HOH A . L 4 HOH 91 291 163 HOH HOH A . L 4 HOH 92 292 165 HOH HOH A . L 4 HOH 93 293 166 HOH HOH A . L 4 HOH 94 294 167 HOH HOH A . L 4 HOH 95 295 174 HOH HOH A . L 4 HOH 96 296 183 HOH HOH A . L 4 HOH 97 297 185 HOH HOH A . L 4 HOH 98 298 186 HOH HOH A . M 4 HOH 1 201 2 HOH HOH B . M 4 HOH 2 202 4 HOH HOH B . M 4 HOH 3 203 6 HOH HOH B . M 4 HOH 4 204 7 HOH HOH B . M 4 HOH 5 205 14 HOH HOH B . M 4 HOH 6 206 17 HOH HOH B . M 4 HOH 7 207 18 HOH HOH B . M 4 HOH 8 208 19 HOH HOH B . M 4 HOH 9 209 22 HOH HOH B . M 4 HOH 10 210 26 HOH HOH B . M 4 HOH 11 211 27 HOH HOH B . M 4 HOH 12 212 28 HOH HOH B . M 4 HOH 13 213 29 HOH HOH B . M 4 HOH 14 214 30 HOH HOH B . M 4 HOH 15 215 36 HOH HOH B . M 4 HOH 16 216 38 HOH HOH B . M 4 HOH 17 217 39 HOH HOH B . M 4 HOH 18 218 41 HOH HOH B . M 4 HOH 19 219 42 HOH HOH B . M 4 HOH 20 220 45 HOH HOH B . M 4 HOH 21 221 46 HOH HOH B . M 4 HOH 22 222 48 HOH HOH B . M 4 HOH 23 223 49 HOH HOH B . M 4 HOH 24 224 51 HOH HOH B . M 4 HOH 25 225 55 HOH HOH B . M 4 HOH 26 226 57 HOH HOH B . M 4 HOH 27 227 59 HOH HOH B . M 4 HOH 28 228 60 HOH HOH B . M 4 HOH 29 229 63 HOH HOH B . M 4 HOH 30 230 65 HOH HOH B . M 4 HOH 31 231 68 HOH HOH B . M 4 HOH 32 232 70 HOH HOH B . M 4 HOH 33 233 73 HOH HOH B . M 4 HOH 34 234 76 HOH HOH B . M 4 HOH 35 235 82 HOH HOH B . M 4 HOH 36 236 83 HOH HOH B . M 4 HOH 37 237 84 HOH HOH B . M 4 HOH 38 238 87 HOH HOH B . M 4 HOH 39 239 88 HOH HOH B . M 4 HOH 40 240 90 HOH HOH B . M 4 HOH 41 241 94 HOH HOH B . M 4 HOH 42 242 96 HOH HOH B . M 4 HOH 43 243 97 HOH HOH B . M 4 HOH 44 244 99 HOH HOH B . M 4 HOH 45 245 102 HOH HOH B . M 4 HOH 46 246 103 HOH HOH B . M 4 HOH 47 247 106 HOH HOH B . M 4 HOH 48 248 107 HOH HOH B . M 4 HOH 49 249 108 HOH HOH B . M 4 HOH 50 250 112 HOH HOH B . M 4 HOH 51 251 113 HOH HOH B . M 4 HOH 52 252 114 HOH HOH B . M 4 HOH 53 253 117 HOH HOH B . M 4 HOH 54 254 118 HOH HOH B . M 4 HOH 55 255 119 HOH HOH B . M 4 HOH 56 256 129 HOH HOH B . M 4 HOH 57 257 132 HOH HOH B . M 4 HOH 58 258 136 HOH HOH B . M 4 HOH 59 259 137 HOH HOH B . M 4 HOH 60 260 138 HOH HOH B . M 4 HOH 61 261 140 HOH HOH B . M 4 HOH 62 262 141 HOH HOH B . M 4 HOH 63 263 159 HOH HOH B . M 4 HOH 64 264 162 HOH HOH B . M 4 HOH 65 265 170 HOH HOH B . M 4 HOH 66 266 171 HOH HOH B . M 4 HOH 67 267 175 HOH HOH B . M 4 HOH 68 268 179 HOH HOH B . M 4 HOH 69 269 184 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id NA _pdbx_struct_special_symmetry.auth_seq_id 105 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id K _pdbx_struct_special_symmetry.label_comp_id NA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DT 5 ? A DT 5 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? L HOH . ? A HOH 205 ? 1_555 89.1 ? 2 OP1 ? A DT 5 ? A DT 5 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? L HOH . ? A HOH 208 ? 1_555 92.9 ? 3 O ? L HOH . ? A HOH 205 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? L HOH . ? A HOH 208 ? 1_555 171.0 ? 4 OP1 ? A DT 5 ? A DT 5 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? L HOH . ? A HOH 216 ? 1_555 86.7 ? 5 O ? L HOH . ? A HOH 205 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? L HOH . ? A HOH 216 ? 1_555 85.6 ? 6 O ? L HOH . ? A HOH 208 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? L HOH . ? A HOH 216 ? 1_555 85.8 ? 7 OP1 ? A DT 5 ? A DT 5 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? L HOH . ? A HOH 295 ? 1_555 108.0 ? 8 O ? L HOH . ? A HOH 205 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? L HOH . ? A HOH 295 ? 1_555 114.0 ? 9 O ? L HOH . ? A HOH 208 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? L HOH . ? A HOH 295 ? 1_555 73.7 ? 10 O ? L HOH . ? A HOH 216 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? L HOH . ? A HOH 295 ? 1_555 155.0 ? 11 OP2 ? A DT 5 ? A DT 5 ? 1_555 NA ? F NA . ? A NA 104 ? 1_555 O ? L HOH . ? A HOH 274 ? 1_555 71.1 ? 12 O ? L HOH . ? A HOH 201 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? L HOH . ? A HOH 202 ? 1_555 105.3 ? 13 O ? L HOH . ? A HOH 201 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? L HOH . ? A HOH 203 ? 1_555 82.8 ? 14 O ? L HOH . ? A HOH 202 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? L HOH . ? A HOH 203 ? 1_555 80.0 ? 15 O ? L HOH . ? A HOH 201 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? L HOH . ? A HOH 209 ? 1_555 82.9 ? 16 O ? L HOH . ? A HOH 202 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? L HOH . ? A HOH 209 ? 1_555 67.9 ? 17 O ? L HOH . ? A HOH 203 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? L HOH . ? A HOH 209 ? 1_555 139.7 ? 18 O ? L HOH . ? A HOH 201 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 86.7 ? 19 O ? L HOH . ? A HOH 202 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 154.0 ? 20 O ? L HOH . ? A HOH 203 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 78.7 ? 21 O ? L HOH . ? A HOH 209 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 137.5 ? 22 O ? L HOH . ? A HOH 214 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? L HOH . ? A HOH 233 ? 1_555 76.5 ? 23 O ? L HOH . ? A HOH 214 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 107.6 ? 24 O ? L HOH . ? A HOH 233 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 71.6 ? 25 O ? L HOH . ? A HOH 214 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? L HOH . ? A HOH 239 ? 1_555 110.5 ? 26 O ? L HOH . ? A HOH 233 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? L HOH . ? A HOH 239 ? 1_555 75.3 ? 27 O ? L HOH . ? A HOH 238 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? L HOH . ? A HOH 239 ? 1_555 120.8 ? 28 O ? L HOH . ? A HOH 214 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? L HOH . ? A HOH 243 ? 1_555 153.0 ? 29 O ? L HOH . ? A HOH 233 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? L HOH . ? A HOH 243 ? 1_555 130.4 ? 30 O ? L HOH . ? A HOH 238 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? L HOH . ? A HOH 243 ? 1_555 84.4 ? 31 O ? L HOH . ? A HOH 239 ? 1_555 CA ? E CA . ? A CA 103 ? 1_555 O ? L HOH . ? A HOH 243 ? 1_555 81.4 ? 32 OP1 ? B DG 4 ? B DG 4 ? 1_555 NA ? K NA . ? B NA 105 ? 1_555 O ? M HOH . ? B HOH 225 ? 1_555 86.9 ? 33 OP1 ? B DG 4 ? B DG 4 ? 1_555 NA ? K NA . ? B NA 105 ? 1_555 O ? M HOH . ? B HOH 238 ? 1_555 90.9 ? 34 O ? M HOH . ? B HOH 225 ? 1_555 NA ? K NA . ? B NA 105 ? 1_555 O ? M HOH . ? B HOH 238 ? 1_555 86.6 ? 35 OP1 ? B DT 5 ? B DT 5 ? 1_555 CA ? G CA . ? B CA 101 ? 1_555 O ? M HOH . ? B HOH 216 ? 1_555 84.8 ? 36 OP1 ? B DT 5 ? B DT 5 ? 1_555 CA ? G CA . ? B CA 101 ? 1_555 O ? M HOH . ? B HOH 261 ? 1_555 77.4 ? 37 O ? M HOH . ? B HOH 216 ? 1_555 CA ? G CA . ? B CA 101 ? 1_555 O ? M HOH . ? B HOH 261 ? 1_555 152.1 ? 38 O ? M HOH . ? B HOH 220 ? 1_555 CA ? H CA . ? B CA 102 ? 1_555 O ? M HOH . ? B HOH 227 ? 1_555 78.0 ? 39 O ? M HOH . ? B HOH 220 ? 1_555 CA ? H CA . ? B CA 102 ? 1_555 O ? M HOH . ? B HOH 254 ? 1_555 91.3 ? 40 O ? M HOH . ? B HOH 227 ? 1_555 CA ? H CA . ? B CA 102 ? 1_555 O ? M HOH . ? B HOH 254 ? 1_555 81.0 ? 41 O ? M HOH . ? B HOH 201 ? 1_555 CA ? I CA . ? B CA 103 ? 1_555 O ? M HOH . ? B HOH 203 ? 1_555 84.8 ? 42 O ? M HOH . ? B HOH 201 ? 1_555 CA ? I CA . ? B CA 103 ? 1_555 O ? M HOH . ? B HOH 205 ? 1_555 138.9 ? 43 O ? M HOH . ? B HOH 203 ? 1_555 CA ? I CA . ? B CA 103 ? 1_555 O ? M HOH . ? B HOH 205 ? 1_555 82.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-12 2 'Structure model' 1 1 2015-01-14 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.value' 20 3 'Structure model' '_struct_conn.pdbx_dist_value' 21 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 35 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 36 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.8.0049 ? 3 XDS 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DT 5 ? ? "O4'" A DT 5 ? ? "C4'" A DT 5 ? ? 103.38 110.10 -6.72 1.00 N 2 1 "O5'" B DC 2 ? ? P B DC 2 ? ? OP2 B DC 2 ? ? 98.50 105.70 -7.20 0.90 N 3 1 "C1'" B DT 5 ? ? "O4'" B DT 5 ? ? "C4'" B DT 5 ? ? 103.97 110.10 -6.13 1.00 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 8 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.060 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 NA NA NA N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 4R49 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.275 -0.079 0.046 -7.842 -5.592 1.290 1 A_DC1:DG10_B A 1 ? B 10 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.153 -0.136 0.041 -2.720 -2.351 -0.937 2 A_DC2:DG9_B A 2 ? B 9 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.136 -0.137 0.142 -4.793 -13.380 -2.131 3 A_DG3:DC8_B A 3 ? B 8 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.314 -0.075 -0.227 -9.138 -6.421 -0.398 4 A_DG4:DC7_B A 4 ? B 7 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.034 -0.130 -0.129 2.931 -4.846 1.066 5 A_DT5:DA6_B A 5 ? B 6 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.066 -0.146 -0.189 -0.485 -5.529 1.549 6 A_DA6:DT5_B A 6 ? B 5 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 0.284 -0.091 -0.174 9.272 -6.809 -0.400 7 A_DC7:DG4_B A 7 ? B 4 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.158 -0.142 0.136 4.532 -13.559 -1.831 8 A_DC8:DG3_B A 8 ? B 3 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.180 -0.174 0.094 3.278 -1.888 -0.873 9 A_DG9:DC2_B A 9 ? B 2 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.247 -0.079 0.037 7.242 -5.934 1.380 10 A_DG10:DC1_B A 10 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.613 0.804 3.217 0.639 5.916 29.119 0.312 -1.061 3.324 11.614 -1.255 29.708 1 AA_DC1DC2:DG9DG10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.801 0.936 3.392 -2.667 3.195 38.455 0.999 0.863 3.501 4.833 4.034 38.671 2 AA_DC2DG3:DC8DG9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 0.554 0.627 3.471 2.735 1.699 40.684 0.700 -0.472 3.522 2.438 -3.927 40.806 3 AA_DG3DG4:DC7DC8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 0.280 -0.174 3.055 -0.394 4.278 23.892 -1.669 -0.781 2.974 10.227 0.941 24.269 4 AA_DG4DT5:DA6DC7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 0.044 0.355 3.579 0.493 1.768 44.067 0.291 -0.008 3.590 2.355 -0.657 44.104 5 AA_DT5DA6:DT5DA6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DA 6 1_555 B DT 5 1_555 A DC 7 1_555 B DG 4 1_555 -0.369 -0.127 3.117 -0.410 4.263 25.153 -1.446 0.724 3.060 9.700 0.932 25.509 6 AA_DA6DC7:DG4DT5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DC 7 1_555 B DG 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.574 0.676 3.456 -2.644 1.559 40.666 0.788 0.513 3.507 2.239 3.798 40.777 7 AA_DC7DC8:DG3DG4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 0.769 0.995 3.377 2.408 3.131 38.717 1.094 -0.847 3.484 4.708 -3.620 38.910 8 AA_DC8DG9:DC2DG3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.805 0.802 3.258 -0.461 5.950 28.722 0.271 1.488 3.364 11.833 0.917 29.323 9 AA_DG9DG10:DC1DC2_BB A 9 ? B 2 ? A 10 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'SODIUM ION' NA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3R86 _pdbx_initial_refinement_model.details 'PDB ENTRY 3R86' #