data_4R4D # _entry.id 4R4D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4R4D pdb_00004r4d 10.2210/pdb4r4d/pdb NDB NA3151 ? ? RCSB RCSB086883 ? ? WWPDB D_1000086883 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4R44 'Racemic crystal structure of a tetramolecular DNA G-quadruplex' unspecified PDB 4R45 'Racemic crystal structure of a bimolecular DNA G-quadruplex (P-1)' unspecified PDB 4R47 'Racemic crystal structure of a bimolecular DNA G-quadruplex (P21/n)' unspecified PDB 4R48 'Racemic crystal structure of a calcium-bound DNA four-way junction' unspecified PDB 4R49 'Racemic crystal structure of a calcium-bound B-DNA duplex' unspecified PDB 4R4A 'Racemic crystal structure of a cobalt-bound B-DNA duplex' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4R4D _pdbx_database_status.recvd_initial_deposition_date 2014-08-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mandal, P.K.' 1 'Collie, G.W.' 2 'Kauffmann, B.' 3 'Huc, I.' 4 # _citation.id primary _citation.title 'Racemic DNA crystallography.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 53 _citation.page_first 14424 _citation.page_last 14427 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25358289 _citation.pdbx_database_id_DOI 10.1002/anie.201409014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mandal, P.K.' 1 ? primary 'Collie, G.W.' 2 ? primary 'Kauffmann, B.' 3 ? primary 'Huc, I.' 4 ? # _cell.entry_id 4R4D _cell.length_a 31.610 _cell.length_b 32.951 _cell.length_c 46.250 _cell.angle_alpha 70.76 _cell.angle_beta 80.77 _cell.angle_gamma 73.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4R4D _symmetry.space_group_name_H-M 'P -1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'" 3045.992 4 ? ? ? 'B-DNA duplex' 2 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 134 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGGTACCGG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4R4D _struct_ref.pdbx_db_accession 4R4D _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code CCGGTACCGG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4R4D A 1 ? 10 ? 4R4D 1 ? 10 ? 1 10 2 1 4R4D B 1 ? 10 ? 4R4D 1 ? 10 ? 1 10 3 1 4R4D C 1 ? 10 ? 4R4D 1 ? 10 ? 1 10 4 1 4R4D D 1 ? 10 ? 4R4D 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # _exptl.entry_id 4R4D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.density_percent_sol 31.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;1 mM DNA, 50 mM sodium cacodylate, 200 mM magnesium chloride, 2.5 mM spermine, 30% v/v MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2014-06-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9998 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9998 # _reflns.entry_id 4R4D _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 43.54 _reflns.d_resolution_high 1.29 _reflns.number_obs 38749 _reflns.number_all 42395 _reflns.percent_possible_obs 91.4 _reflns.pdbx_Rmerge_I_obs 0.0230 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.11 _reflns.B_iso_Wilson_estimate 47.68 _reflns.pdbx_redundancy 1.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.29 _reflns_shell.d_res_low 1.37 _reflns_shell.percent_possible_all 86.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4R4D _refine.ls_number_reflns_obs 37851 _refine.ls_number_reflns_all 40186 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.54 _refine.ls_d_res_high 1.29 _refine.ls_percent_reflns_obs 94.19 _refine.ls_R_factor_obs 0.27090 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.26890 _refine.ls_R_factor_R_free 0.31130 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1979 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 18.519 _refine.aniso_B[1][1] 0.25 _refine.aniso_B[2][2] -0.54 _refine.aniso_B[3][3] 0.48 _refine.aniso_B[1][2] 0.20 _refine.aniso_B[1][3] -0.03 _refine.aniso_B[2][3] 0.16 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3R86' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.071 _refine.overall_SU_ML 0.034 _refine.overall_SU_B 1.747 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 808 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 134 _refine_hist.number_atoms_total 951 _refine_hist.d_res_high 1.29 _refine_hist.d_res_low 43.54 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.013 0.011 ? 1087 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.298 1.160 ? 1678 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.121 0.200 ? 144 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.028 0.020 ? 503 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 9.989 3.000 ? 1087 ? 'X-RAY DIFFRACTION' r_sphericity_free 14.304 5.000 ? 15 ? 'X-RAY DIFFRACTION' r_sphericity_bonded 10.356 5.000 ? 1096 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.29 _refine_ls_shell.d_res_low 1.326 _refine_ls_shell.number_reflns_R_work 2522 _refine_ls_shell.R_factor_R_work 0.329 _refine_ls_shell.percent_reflns_obs 85.06 _refine_ls_shell.R_factor_R_free 0.392 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 137 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4R4D _struct.title 'Racemic crystal structure of a magnesium-bound B-DNA duplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R4D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'racemic DNA, racemates, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 2 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 101 A HOH 210 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc2 metalc ? ? E MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 101 B HOH 217 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 101 B HOH 220 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc4 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 102 A HOH 201 1_555 ? ? ? ? ? ? ? 2.155 ? ? metalc5 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 102 A HOH 203 1_555 ? ? ? ? ? ? ? 1.987 ? ? metalc6 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 102 A HOH 206 1_555 ? ? ? ? ? ? ? 1.945 ? ? metalc7 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 102 A HOH 234 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc8 metalc ? ? B DT 5 OP1 B ? ? 1_555 J MG . MG ? ? B DT 5 B MG 104 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc9 metalc ? ? B DC 8 OP1 ? ? ? 1_555 G MG . MG ? ? B DC 8 B MG 101 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc10 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 101 B HOH 213 1_555 ? ? ? ? ? ? ? 1.897 ? ? metalc11 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 101 B HOH 216 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc12 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 101 B HOH 218 1_555 ? ? ? ? ? ? ? 2.359 ? ? metalc13 metalc ? ? G MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 101 B HOH 225 1_555 ? ? ? ? ? ? ? 1.932 ? ? metalc14 metalc ? ? H MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 102 B HOH 202 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc15 metalc ? ? H MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 102 B HOH 203 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc16 metalc ? ? H MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 102 B HOH 211 1_555 ? ? ? ? ? ? ? 2.003 ? ? metalc17 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 103 B HOH 210 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc18 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 104 B HOH 229 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc19 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 104 B HOH 234 1_555 ? ? ? ? ? ? ? 1.741 ? ? metalc20 metalc ? ? K MG . MG ? ? ? 1_555 P HOH . O ? ? C MG 101 C HOH 204 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc21 metalc ? ? K MG . MG ? ? ? 1_555 P HOH . O ? ? C MG 101 C HOH 213 1_555 ? ? ? ? ? ? ? 2.161 ? ? metalc22 metalc ? ? K MG . MG ? ? ? 1_555 P HOH . O ? ? C MG 101 C HOH 228 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc23 metalc ? ? L NA . NA ? ? ? 1_555 P HOH . O ? ? C NA 102 C HOH 208 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc24 metalc ? ? L NA . NA ? ? ? 1_555 P HOH . O ? ? C NA 102 C HOH 215 1_555 ? ? ? ? ? ? ? 2.029 ? ? metalc25 metalc ? ? L NA . NA ? ? ? 1_555 Q HOH . O ? ? C NA 102 D HOH 205 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc26 metalc ? ? D DC 8 OP1 ? ? ? 1_555 M MG . MG ? ? D DC 8 D MG 101 1_555 ? ? ? ? ? ? ? 1.974 ? ? metalc27 metalc ? ? M MG . MG ? ? ? 1_555 Q HOH . O ? ? D MG 101 D HOH 201 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc28 metalc ? ? M MG . MG ? ? ? 1_555 Q HOH . O ? ? D MG 101 D HOH 203 1_555 ? ? ? ? ? ? ? 2.058 ? ? hydrog1 hydrog ? ? A DC 1 N3 A ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 A ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 A ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 N3 A ? ? 1_555 B DA 6 N1 A ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 O4 A ? ? 1_555 B DA 6 N6 A ? A DT 5 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 10 N1 A ? C DC 1 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 10 O6 A ? C DC 1 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 10 N2 A ? C DC 1 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 2 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 2 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 2 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 8 N3 ? ? C DG 3 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 8 O2 ? ? C DG 3 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 8 N4 ? ? C DG 3 D DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 6 N1 ? ? C DT 5 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 6 N6 ? ? C DT 5 D DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DA 6 N1 A ? ? 1_555 D DT 5 N3 ? ? C DA 6 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DA 6 N6 A ? ? 1_555 D DT 5 O4 ? ? C DA 6 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 7 N3 A ? ? 1_555 D DG 4 N1 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 7 N4 A ? ? 1_555 D DG 4 O6 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DC 7 O2 A ? ? 1_555 D DG 4 N2 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 8 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 8 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 8 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 9 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 9 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 9 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 3 'BINDING SITE FOR RESIDUE MG A 101' AC2 Software A MG 102 ? 4 'BINDING SITE FOR RESIDUE MG A 102' AC3 Software B MG 101 ? 5 'BINDING SITE FOR RESIDUE MG B 101' AC4 Software B MG 102 ? 4 'BINDING SITE FOR RESIDUE MG B 102' AC5 Software B MG 103 ? 1 'BINDING SITE FOR RESIDUE MG B 103' AC6 Software B MG 104 ? 3 'BINDING SITE FOR RESIDUE MG B 104' AC7 Software C MG 101 ? 3 'BINDING SITE FOR RESIDUE MG C 101' AC8 Software C NA 102 ? 3 'BINDING SITE FOR RESIDUE NA C 102' AC9 Software D MG 101 ? 3 'BINDING SITE FOR RESIDUE MG D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HOH N . ? HOH A 210 . ? 1_555 ? 2 AC1 3 HOH O . ? HOH B 217 . ? 1_555 ? 3 AC1 3 HOH O . ? HOH B 220 . ? 1_555 ? 4 AC2 4 HOH N . ? HOH A 201 . ? 1_555 ? 5 AC2 4 HOH N . ? HOH A 203 . ? 1_555 ? 6 AC2 4 HOH N . ? HOH A 206 . ? 1_555 ? 7 AC2 4 HOH N . ? HOH A 234 . ? 1_555 ? 8 AC3 5 DC B 8 ? DC B 8 . ? 1_555 ? 9 AC3 5 HOH O . ? HOH B 213 . ? 1_555 ? 10 AC3 5 HOH O . ? HOH B 216 . ? 1_555 ? 11 AC3 5 HOH O . ? HOH B 218 . ? 1_555 ? 12 AC3 5 HOH O . ? HOH B 225 . ? 1_555 ? 13 AC4 4 HOH N . ? HOH A 209 . ? 1_565 ? 14 AC4 4 HOH O . ? HOH B 202 . ? 1_555 ? 15 AC4 4 HOH O . ? HOH B 203 . ? 1_555 ? 16 AC4 4 HOH O . ? HOH B 211 . ? 1_555 ? 17 AC5 1 HOH O . ? HOH B 210 . ? 1_555 ? 18 AC6 3 DT B 5 ? DT B 5 . ? 1_555 ? 19 AC6 3 HOH O . ? HOH B 229 . ? 1_555 ? 20 AC6 3 HOH O . ? HOH B 234 . ? 1_555 ? 21 AC7 3 HOH P . ? HOH C 204 . ? 1_555 ? 22 AC7 3 HOH P . ? HOH C 213 . ? 1_555 ? 23 AC7 3 HOH P . ? HOH C 228 . ? 1_555 ? 24 AC8 3 HOH P . ? HOH C 208 . ? 1_555 ? 25 AC8 3 HOH P . ? HOH C 215 . ? 1_555 ? 26 AC8 3 HOH Q . ? HOH D 205 . ? 1_555 ? 27 AC9 3 DC D 8 ? DC D 8 . ? 1_555 ? 28 AC9 3 HOH Q . ? HOH D 201 . ? 1_555 ? 29 AC9 3 HOH Q . ? HOH D 203 . ? 1_555 ? # _database_PDB_matrix.entry_id 4R4D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4R4D _atom_sites.fract_transf_matrix[1][1] 0.031636 _atom_sites.fract_transf_matrix[1][2] -0.009207 _atom_sites.fract_transf_matrix[1][3] -0.002491 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031607 _atom_sites.fract_transf_matrix[2][3] -0.009955 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022966 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DC 2 2 2 DC DC B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DT 5 5 5 DT DT B . n B 1 6 DA 6 6 6 DA DA B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DC 8 8 8 DC DC B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DG 10 10 10 DG DG B . n C 1 1 DC 1 1 1 DC DC C . n C 1 2 DC 2 2 2 DC DC C . n C 1 3 DG 3 3 3 DG DG C . n C 1 4 DG 4 4 4 DG DG C . n C 1 5 DT 5 5 5 DT DT C . n C 1 6 DA 6 6 6 DA DA C . n C 1 7 DC 7 7 7 DC DC C . n C 1 8 DC 8 8 8 DC DC C . n C 1 9 DG 9 9 9 DG DG C . n C 1 10 DG 10 10 10 DG DG C . n D 1 1 DC 1 1 1 DC DC D . n D 1 2 DC 2 2 2 DC DC D . n D 1 3 DG 3 3 3 DG DG D . n D 1 4 DG 4 4 4 DG DG D . n D 1 5 DT 5 5 5 DT DT D . n D 1 6 DA 6 6 6 DA DA D . n D 1 7 DC 7 7 7 DC DC D . n D 1 8 DC 8 8 8 DC DC D . n D 1 9 DG 9 9 9 DG DG D . n D 1 10 DG 10 10 10 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG 1 101 5 MG MG A . F 2 MG 1 102 8 MG MG A . G 2 MG 1 101 1 MG MG B . H 2 MG 1 102 3 MG MG B . I 2 MG 1 103 6 MG MG B . J 2 MG 1 104 7 MG MG B . K 2 MG 1 101 4 MG MG C . L 3 NA 1 102 1 NA NA C . M 2 MG 1 101 2 MG MG D . N 4 HOH 1 201 25 HOH HOH A . N 4 HOH 2 202 31 HOH HOH A . N 4 HOH 3 203 33 HOH HOH A . N 4 HOH 4 204 39 HOH HOH A . N 4 HOH 5 205 40 HOH HOH A . N 4 HOH 6 206 43 HOH HOH A . N 4 HOH 7 207 46 HOH HOH A . N 4 HOH 8 208 48 HOH HOH A . N 4 HOH 9 209 49 HOH HOH A . N 4 HOH 10 210 51 HOH HOH A . N 4 HOH 11 211 57 HOH HOH A . N 4 HOH 12 212 60 HOH HOH A . N 4 HOH 13 213 62 HOH HOH A . N 4 HOH 14 214 71 HOH HOH A . N 4 HOH 15 215 72 HOH HOH A . N 4 HOH 16 216 76 HOH HOH A . N 4 HOH 17 217 77 HOH HOH A . N 4 HOH 18 218 78 HOH HOH A . N 4 HOH 19 219 79 HOH HOH A . N 4 HOH 20 220 80 HOH HOH A . N 4 HOH 21 221 91 HOH HOH A . N 4 HOH 22 222 92 HOH HOH A . N 4 HOH 23 223 93 HOH HOH A . N 4 HOH 24 224 98 HOH HOH A . N 4 HOH 25 225 99 HOH HOH A . N 4 HOH 26 226 100 HOH HOH A . N 4 HOH 27 227 101 HOH HOH A . N 4 HOH 28 228 104 HOH HOH A . N 4 HOH 29 229 108 HOH HOH A . N 4 HOH 30 230 112 HOH HOH A . N 4 HOH 31 231 117 HOH HOH A . N 4 HOH 32 232 121 HOH HOH A . N 4 HOH 33 233 123 HOH HOH A . N 4 HOH 34 234 127 HOH HOH A . N 4 HOH 35 235 128 HOH HOH A . O 4 HOH 1 201 6 HOH HOH B . O 4 HOH 2 202 11 HOH HOH B . O 4 HOH 3 203 12 HOH HOH B . O 4 HOH 4 204 13 HOH HOH B . O 4 HOH 5 205 20 HOH HOH B . O 4 HOH 6 206 32 HOH HOH B . O 4 HOH 7 207 34 HOH HOH B . O 4 HOH 8 208 37 HOH HOH B . O 4 HOH 9 209 41 HOH HOH B . O 4 HOH 10 210 42 HOH HOH B . O 4 HOH 11 211 45 HOH HOH B . O 4 HOH 12 212 52 HOH HOH B . O 4 HOH 13 213 54 HOH HOH B . O 4 HOH 14 214 58 HOH HOH B . O 4 HOH 15 215 59 HOH HOH B . O 4 HOH 16 216 61 HOH HOH B . O 4 HOH 17 217 68 HOH HOH B . O 4 HOH 18 218 74 HOH HOH B . O 4 HOH 19 219 75 HOH HOH B . O 4 HOH 20 220 82 HOH HOH B . O 4 HOH 21 221 83 HOH HOH B . O 4 HOH 22 222 94 HOH HOH B . O 4 HOH 23 223 111 HOH HOH B . O 4 HOH 24 224 114 HOH HOH B . O 4 HOH 25 225 115 HOH HOH B . O 4 HOH 26 226 119 HOH HOH B . O 4 HOH 27 227 120 HOH HOH B . O 4 HOH 28 228 124 HOH HOH B . O 4 HOH 29 229 125 HOH HOH B . O 4 HOH 30 230 129 HOH HOH B . O 4 HOH 31 231 130 HOH HOH B . O 4 HOH 32 232 133 HOH HOH B . O 4 HOH 33 233 134 HOH HOH B . O 4 HOH 34 234 135 HOH HOH B . P 4 HOH 1 201 1 HOH HOH C . P 4 HOH 2 202 3 HOH HOH C . P 4 HOH 3 203 7 HOH HOH C . P 4 HOH 4 204 8 HOH HOH C . P 4 HOH 5 205 9 HOH HOH C . P 4 HOH 6 206 10 HOH HOH C . P 4 HOH 7 207 14 HOH HOH C . P 4 HOH 8 208 16 HOH HOH C . P 4 HOH 9 209 17 HOH HOH C . P 4 HOH 10 210 19 HOH HOH C . P 4 HOH 11 211 22 HOH HOH C . P 4 HOH 12 212 24 HOH HOH C . P 4 HOH 13 213 26 HOH HOH C . P 4 HOH 14 214 27 HOH HOH C . P 4 HOH 15 215 28 HOH HOH C . P 4 HOH 16 216 29 HOH HOH C . P 4 HOH 17 217 30 HOH HOH C . P 4 HOH 18 218 35 HOH HOH C . P 4 HOH 19 219 36 HOH HOH C . P 4 HOH 20 220 44 HOH HOH C . P 4 HOH 21 221 50 HOH HOH C . P 4 HOH 22 222 55 HOH HOH C . P 4 HOH 23 223 63 HOH HOH C . P 4 HOH 24 224 64 HOH HOH C . P 4 HOH 25 225 67 HOH HOH C . P 4 HOH 26 226 69 HOH HOH C . P 4 HOH 27 227 70 HOH HOH C . P 4 HOH 28 228 85 HOH HOH C . P 4 HOH 29 229 88 HOH HOH C . P 4 HOH 30 230 89 HOH HOH C . P 4 HOH 31 231 95 HOH HOH C . P 4 HOH 32 232 96 HOH HOH C . P 4 HOH 33 233 97 HOH HOH C . P 4 HOH 34 234 105 HOH HOH C . P 4 HOH 35 235 106 HOH HOH C . P 4 HOH 36 236 116 HOH HOH C . P 4 HOH 37 237 122 HOH HOH C . P 4 HOH 38 238 131 HOH HOH C . Q 4 HOH 1 201 2 HOH HOH D . Q 4 HOH 2 202 4 HOH HOH D . Q 4 HOH 3 203 5 HOH HOH D . Q 4 HOH 4 204 15 HOH HOH D . Q 4 HOH 5 205 18 HOH HOH D . Q 4 HOH 6 206 21 HOH HOH D . Q 4 HOH 7 207 23 HOH HOH D . Q 4 HOH 8 208 38 HOH HOH D . Q 4 HOH 9 209 47 HOH HOH D . Q 4 HOH 10 210 53 HOH HOH D . Q 4 HOH 11 211 56 HOH HOH D . Q 4 HOH 12 212 65 HOH HOH D . Q 4 HOH 13 213 66 HOH HOH D . Q 4 HOH 14 214 73 HOH HOH D . Q 4 HOH 15 215 81 HOH HOH D . Q 4 HOH 16 216 84 HOH HOH D . Q 4 HOH 17 217 86 HOH HOH D . Q 4 HOH 18 218 87 HOH HOH D . Q 4 HOH 19 219 90 HOH HOH D . Q 4 HOH 20 220 102 HOH HOH D . Q 4 HOH 21 221 103 HOH HOH D . Q 4 HOH 22 222 107 HOH HOH D . Q 4 HOH 23 223 109 HOH HOH D . Q 4 HOH 24 224 110 HOH HOH D . Q 4 HOH 25 225 113 HOH HOH D . Q 4 HOH 26 226 118 HOH HOH D . Q 4 HOH 27 227 126 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,N,O 2 1 C,D,K,L,M,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? N HOH . ? A HOH 210 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? O HOH . ? B HOH 217 ? 1_555 92.3 ? 2 O ? N HOH . ? A HOH 210 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? O HOH . ? B HOH 220 ? 1_555 82.9 ? 3 O ? O HOH . ? B HOH 217 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? O HOH . ? B HOH 220 ? 1_555 84.5 ? 4 O ? N HOH . ? A HOH 201 ? 1_555 MG ? F MG . ? A MG 102 ? 1_555 O ? N HOH . ? A HOH 203 ? 1_555 96.9 ? 5 O ? N HOH . ? A HOH 201 ? 1_555 MG ? F MG . ? A MG 102 ? 1_555 O ? N HOH . ? A HOH 206 ? 1_555 92.9 ? 6 O ? N HOH . ? A HOH 203 ? 1_555 MG ? F MG . ? A MG 102 ? 1_555 O ? N HOH . ? A HOH 206 ? 1_555 91.2 ? 7 O ? N HOH . ? A HOH 201 ? 1_555 MG ? F MG . ? A MG 102 ? 1_555 O ? N HOH . ? A HOH 234 ? 1_555 170.7 ? 8 O ? N HOH . ? A HOH 203 ? 1_555 MG ? F MG . ? A MG 102 ? 1_555 O ? N HOH . ? A HOH 234 ? 1_555 86.8 ? 9 O ? N HOH . ? A HOH 206 ? 1_555 MG ? F MG . ? A MG 102 ? 1_555 O ? N HOH . ? A HOH 234 ? 1_555 95.6 ? 10 OP1 B B DT 5 ? B DT 5 ? 1_555 MG ? J MG . ? B MG 104 ? 1_555 O ? O HOH . ? B HOH 229 ? 1_555 71.5 ? 11 OP1 B B DT 5 ? B DT 5 ? 1_555 MG ? J MG . ? B MG 104 ? 1_555 O ? O HOH . ? B HOH 234 ? 1_555 56.3 ? 12 O ? O HOH . ? B HOH 229 ? 1_555 MG ? J MG . ? B MG 104 ? 1_555 O ? O HOH . ? B HOH 234 ? 1_555 116.1 ? 13 OP1 ? B DC 8 ? B DC 8 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 213 ? 1_555 87.3 ? 14 OP1 ? B DC 8 ? B DC 8 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 216 ? 1_555 82.2 ? 15 O ? O HOH . ? B HOH 213 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 216 ? 1_555 88.6 ? 16 OP1 ? B DC 8 ? B DC 8 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 218 ? 1_555 104.5 ? 17 O ? O HOH . ? B HOH 213 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 218 ? 1_555 82.3 ? 18 O ? O HOH . ? B HOH 216 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 218 ? 1_555 168.4 ? 19 OP1 ? B DC 8 ? B DC 8 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 225 ? 1_555 99.6 ? 20 O ? O HOH . ? B HOH 213 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 225 ? 1_555 170.4 ? 21 O ? O HOH . ? B HOH 216 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 225 ? 1_555 98.9 ? 22 O ? O HOH . ? B HOH 218 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? O HOH . ? B HOH 225 ? 1_555 89.4 ? 23 O ? O HOH . ? B HOH 202 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? O HOH . ? B HOH 203 ? 1_555 88.6 ? 24 O ? O HOH . ? B HOH 202 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? O HOH . ? B HOH 211 ? 1_555 94.4 ? 25 O ? O HOH . ? B HOH 203 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? O HOH . ? B HOH 211 ? 1_555 88.7 ? 26 O ? P HOH . ? C HOH 204 ? 1_555 MG ? K MG . ? C MG 101 ? 1_555 O ? P HOH . ? C HOH 213 ? 1_555 82.2 ? 27 O ? P HOH . ? C HOH 204 ? 1_555 MG ? K MG . ? C MG 101 ? 1_555 O ? P HOH . ? C HOH 228 ? 1_555 84.2 ? 28 O ? P HOH . ? C HOH 213 ? 1_555 MG ? K MG . ? C MG 101 ? 1_555 O ? P HOH . ? C HOH 228 ? 1_555 136.4 ? 29 O ? P HOH . ? C HOH 208 ? 1_555 NA ? L NA . ? C NA 102 ? 1_555 O ? P HOH . ? C HOH 215 ? 1_555 92.2 ? 30 O ? P HOH . ? C HOH 208 ? 1_555 NA ? L NA . ? C NA 102 ? 1_555 O ? Q HOH . ? D HOH 205 ? 1_555 92.4 ? 31 O ? P HOH . ? C HOH 215 ? 1_555 NA ? L NA . ? C NA 102 ? 1_555 O ? Q HOH . ? D HOH 205 ? 1_555 96.6 ? 32 OP1 ? D DC 8 ? D DC 8 ? 1_555 MG ? M MG . ? D MG 101 ? 1_555 O ? Q HOH . ? D HOH 201 ? 1_555 95.2 ? 33 OP1 ? D DC 8 ? D DC 8 ? 1_555 MG ? M MG . ? D MG 101 ? 1_555 O ? Q HOH . ? D HOH 203 ? 1_555 90.9 ? 34 O ? Q HOH . ? D HOH 201 ? 1_555 MG ? M MG . ? D MG 101 ? 1_555 O ? Q HOH . ? D HOH 203 ? 1_555 88.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-12 2 'Structure model' 1 1 2015-01-14 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.8.0049 ? 3 XDS 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DG 4 ? ? P B DT 5 ? B 1.683 1.607 0.076 0.012 Y 2 1 "O3'" B DA 6 ? B "C3'" B DA 6 ? B 1.378 1.419 -0.041 0.006 N 3 1 "O3'" B DA 6 ? B P B DC 7 ? ? 1.487 1.607 -0.120 0.012 Y 4 1 "O3'" D DG 9 ? ? P D DG 10 ? B 1.725 1.607 0.118 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DG 3 ? ? P A DG 3 ? ? OP2 A DG 3 ? ? 99.94 105.70 -5.76 0.90 N 2 1 "C3'" B DG 4 ? ? "O3'" B DG 4 ? ? P B DT 5 ? B 132.87 119.70 13.17 1.20 Y 3 1 "O5'" B DT 5 ? A P B DT 5 ? A OP1 B DT 5 ? A 99.48 105.70 -6.22 0.90 N 4 1 "O5'" B DT 5 ? B P B DT 5 ? B OP2 B DT 5 ? B 98.20 105.70 -7.50 0.90 N 5 1 "O5'" B DA 6 ? B "C5'" B DA 6 ? B "C4'" B DA 6 ? B 99.29 109.40 -10.11 0.80 N 6 1 "O5'" B DC 8 ? ? P B DC 8 ? ? OP2 B DC 8 ? ? 99.16 105.70 -6.54 0.90 N 7 1 "O5'" C DG 4 ? ? P C DG 4 ? ? OP2 C DG 4 ? ? 95.81 105.70 -9.89 0.90 N 8 1 "C1'" C DG 4 ? ? "O4'" C DG 4 ? ? "C4'" C DG 4 ? ? 103.28 110.10 -6.82 1.00 N 9 1 "C2'" C DT 5 ? ? "C3'" C DT 5 ? ? "O3'" C DT 5 ? ? 88.83 109.40 -20.57 2.50 N 10 1 "C3'" C DT 5 ? ? "O3'" C DT 5 ? ? P C DA 6 ? A 129.26 119.70 9.56 1.20 Y 11 1 "O5'" C DC 7 ? A P C DC 7 ? A OP1 C DC 7 ? A 93.50 105.70 -12.20 0.90 N 12 1 "O5'" C DC 7 ? A "C5'" C DC 7 ? A "C4'" C DC 7 ? A 102.46 109.40 -6.94 0.80 N 13 1 "O5'" D DG 4 ? ? P D DG 4 ? ? OP2 D DG 4 ? ? 91.15 105.70 -14.55 0.90 N 14 1 "C1'" D DC 7 ? ? "O4'" D DC 7 ? ? "C4'" D DC 7 ? ? 103.99 110.10 -6.11 1.00 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC C 8 ? ? 0.083 'SIDE CHAIN' 2 1 DC D 1 ? ? 0.060 'SIDE CHAIN' 3 1 DC D 2 ? ? 0.073 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 NA NA NA N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4R4D 'double helix' 4R4D 'b-form double helix' 4R4D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.185 -0.201 0.328 -6.948 -19.404 0.673 1 A_DC1:DG10_B A 1 ? B 10 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.185 -0.131 0.150 -4.829 -7.502 -2.113 2 A_DC2:DG9_B A 2 ? B 9 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.196 -0.168 -0.069 -6.295 -10.169 -2.661 3 A_DG3:DC8_B A 3 ? B 8 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.206 -0.153 0.027 -5.859 -14.625 -1.154 4 A_DG4:DC7_B A 4 ? B 7 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.622 -0.338 -0.286 -1.168 -3.806 -1.056 5 A_DT5:DA6_B A 5 ? B 6 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 0.208 -0.146 -0.029 3.643 -18.871 0.387 6 A_DC7:DG4_B A 7 ? B 4 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.184 -0.174 0.026 5.256 -10.664 -1.209 7 A_DC8:DG3_B A 8 ? B 3 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.478 -0.064 -0.324 -4.805 -11.667 -7.700 8 A_DG9:DC2_B A 9 ? B 2 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.065 -0.033 0.148 8.328 -7.181 -4.226 9 A_DG10:DC1_B A 10 ? B 1 ? 19 1 1 C DC 1 1_555 D DG 10 1_555 0.328 -0.270 0.031 -2.581 -6.903 -2.787 10 C_DC1:DG10_D C 1 ? D 10 ? 19 1 1 C DC 2 1_555 D DG 9 1_555 0.239 -0.171 -0.185 4.124 -14.453 0.001 11 C_DC2:DG9_D C 2 ? D 9 ? 19 1 1 C DG 3 1_555 D DC 8 1_555 -0.166 -0.135 0.026 -6.018 -10.330 -1.519 12 C_DG3:DC8_D C 3 ? D 8 ? 19 1 1 C DG 4 1_555 D DC 7 1_555 -0.207 -0.163 0.012 -4.387 -16.647 -0.912 13 C_DG4:DC7_D C 4 ? D 7 ? 19 1 1 C DT 5 1_555 D DA 6 1_555 -0.061 -0.148 -0.024 -2.061 -8.507 2.500 14 C_DT5:DA6_D C 5 ? D 6 ? 20 1 1 C DA 6 1_555 D DT 5 1_555 -0.198 -0.304 -0.021 5.463 -9.082 -2.368 15 C_DA6:DT5_D C 6 ? D 5 ? 20 1 1 C DC 7 1_555 D DG 4 1_555 0.212 -0.116 0.084 2.894 -17.607 -0.654 16 C_DC7:DG4_D C 7 ? D 4 ? 19 1 1 C DC 8 1_555 D DG 3 1_555 0.357 -0.208 0.157 -5.333 -13.778 2.506 17 C_DC8:DG3_D C 8 ? D 3 ? 19 1 1 C DG 9 1_555 D DC 2 1_555 -0.154 -0.113 0.193 7.095 -8.685 -0.698 18 C_DG9:DC2_D C 9 ? D 2 ? 19 1 1 C DG 10 1_555 D DC 1 1_555 -0.146 -0.110 0.123 3.184 -12.773 -0.985 19 C_DG10:DC1_D C 10 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.251 -0.738 3.244 4.557 8.670 35.563 -2.299 0.992 2.937 13.873 -7.291 36.845 1 AA_DC1DC2:DG9DG10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.061 0.289 3.296 1.782 8.493 36.896 -0.665 0.139 3.280 13.195 -2.769 37.869 2 AA_DC2DG3:DC8DG9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 0.536 -0.288 3.309 -0.988 8.488 30.777 -2.065 -1.154 3.103 15.618 1.819 31.913 3 AA_DG3DG4:DC7DC8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 0.571 -0.135 3.188 4.797 2.660 28.781 -0.834 -0.106 3.214 5.291 -9.542 29.288 4 AA_DG4DT5:DA6DC7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DT 5 1_555 B DA 6 1_555 A DC 7 1_555 B DG 4 1_555 -0.547 1.119 6.621 -6.740 0.070 73.545 0.927 0.022 6.645 0.058 5.618 73.810 5 AA_DT5DC7:DG4DA6_BB A 5 ? B 6 ? A 7 ? B 4 ? 1 A DC 7 1_555 B DG 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.591 0.052 3.323 0.067 9.896 30.787 -1.696 1.075 3.186 18.064 -0.123 32.302 6 AA_DC7DC8:DG3DG4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 0.299 1.616 3.630 6.191 9.177 37.831 1.119 0.420 3.902 13.798 -9.307 39.360 7 AA_DC8DG9:DC2DG3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 0.406 0.144 2.988 -4.345 3.931 29.034 -0.473 -1.629 2.891 7.741 8.557 29.607 8 AA_DG9DG10:DC1DC2_BB A 9 ? B 2 ? A 10 ? B 1 ? 1 C DC 1 1_555 D DG 10 1_555 C DC 2 1_555 D DG 9 1_555 0.920 0.864 3.119 7.774 1.219 40.004 1.108 -0.476 3.258 1.761 -11.232 40.739 9 CC_DC1DC2:DG9DG10_DD C 1 ? D 10 ? C 2 ? D 9 ? 1 C DC 2 1_555 D DG 9 1_555 C DG 3 1_555 D DC 8 1_555 -1.400 1.182 3.485 -7.536 11.047 34.766 0.137 1.024 3.882 17.699 12.074 37.175 10 CC_DC2DG3:DC8DG9_DD C 2 ? D 9 ? C 3 ? D 8 ? 1 C DG 3 1_555 D DC 8 1_555 C DG 4 1_555 D DC 7 1_555 0.664 0.045 3.318 -0.777 10.645 31.029 -1.784 -1.313 3.145 19.199 1.402 32.771 11 CC_DG3DG4:DC7DC8_DD C 3 ? D 8 ? C 4 ? D 7 ? 1 C DG 4 1_555 D DC 7 1_555 C DT 5 1_555 D DA 6 1_555 0.173 -0.542 3.204 2.229 2.283 27.979 -1.635 0.152 3.154 4.701 -4.592 28.156 12 CC_DG4DT5:DA6DC7_DD C 4 ? D 7 ? C 5 ? D 6 ? 1 C DT 5 1_555 D DA 6 1_555 C DA 6 1_555 D DT 5 1_555 0.354 1.079 3.218 1.659 -1.977 39.065 1.841 -0.334 3.174 -2.953 -2.478 39.147 13 CC_DT5DA6:DT5DA6_DD C 5 ? D 6 ? C 6 ? D 5 ? 1 C DA 6 1_555 D DT 5 1_555 C DC 7 1_555 D DG 4 1_555 -0.004 -0.346 3.375 -2.032 -0.491 38.034 -0.466 -0.260 3.375 -0.753 3.115 38.090 14 CC_DA6DC7:DG4DT5_DD C 6 ? D 5 ? C 7 ? D 4 ? 1 C DC 7 1_555 D DG 4 1_555 C DC 8 1_555 D DG 3 1_555 -0.405 -0.367 3.493 -0.768 6.569 35.787 -1.557 0.535 3.383 10.579 1.237 36.374 15 CC_DC7DC8:DG3DG4_DD C 7 ? D 4 ? C 8 ? D 3 ? 1 C DC 8 1_555 D DG 3 1_555 C DG 9 1_555 D DC 2 1_555 0.078 0.760 3.089 -0.747 11.828 29.133 -0.796 -0.283 3.149 22.381 1.414 31.403 16 CC_DC8DG9:DC2DG3_DD C 8 ? D 3 ? C 9 ? D 2 ? 1 C DG 9 1_555 D DC 2 1_555 C DG 10 1_555 D DC 1 1_555 0.110 -0.758 3.381 -1.463 5.697 37.103 -1.934 -0.366 3.227 8.884 2.281 37.550 17 CC_DG9DG10:DC1DC2_DD C 9 ? D 2 ? C 10 ? D 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SODIUM ION' NA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3R86 _pdbx_initial_refinement_model.details 'PDB ENTRY 3R86' #