data_4R4E # _entry.id 4R4E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4R4E pdb_00004r4e 10.2210/pdb4r4e/pdb NDB NA3142 ? ? RCSB RCSB086884 ? ? WWPDB D_1000086884 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-03-04 2 'Structure model' 1 1 2024-02-28 3 'Structure model' 1 2 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' struct_ref_seq_dif 5 2 'Structure model' struct_site 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_ref_seq_dif.details' 4 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4R4E _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-08-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Schumacher, M.A.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structures of regulatory machinery reveal novel molecular mechanisms controlling B. subtilis nitrogen homeostasis.' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 29 _citation.page_first 451 _citation.page_last 464 _citation.year 2015 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25691471 _citation.pdbx_database_id_DOI 10.1101/gad.254714.114 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schumacher, M.A.' 1 ? primary 'Chinnam, N.B.' 2 ? primary 'Cuthbert, B.' 3 ? primary 'Tonthat, N.K.' 4 ? primary 'Whitfill, T.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HTH-type transcriptional regulator GlnR' 9683.245 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*TP*TP*CP*TP*GP*AP*CP*A)-3') ; 2714.811 1 ? ? ? 'cognate DNA' 3 polymer syn ;DNA (5'-D(*TP*GP*TP*CP*AP*GP*TP*A)-3') ; 2441.628 1 ? ? ? 'cognate DNA (complement to 2)' 4 non-polymer syn '3-CYCLOHEXYL-1-PROPYLSULFONIC ACID' 221.317 1 ? ? ? ? 5 water nat water 18.015 50 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MSDNIRRSMPLFPIGIVMQLTELSARQIRYYEENGLIFPARTEGNRRLFSFHDVDKLLEIKHLIEQGVNMAGIKQILAKA EAEP ; ;MSDNIRRSMPLFPIGIVMQLTELSARQIRYYEENGLIFPARTEGNRRLFSFHDVDKLLEIKHLIEQGVNMAGIKQILAKA EAEP ; B,A ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DT)(DC)(DT)(DG)(DA)(DC)(DA)' ATTCTGACA D ? 3 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DC)(DA)(DG)(DT)(DA)' TGTCAGTA E ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '3-CYCLOHEXYL-1-PROPYLSULFONIC ACID' CXS 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 ASP n 1 4 ASN n 1 5 ILE n 1 6 ARG n 1 7 ARG n 1 8 SER n 1 9 MET n 1 10 PRO n 1 11 LEU n 1 12 PHE n 1 13 PRO n 1 14 ILE n 1 15 GLY n 1 16 ILE n 1 17 VAL n 1 18 MET n 1 19 GLN n 1 20 LEU n 1 21 THR n 1 22 GLU n 1 23 LEU n 1 24 SER n 1 25 ALA n 1 26 ARG n 1 27 GLN n 1 28 ILE n 1 29 ARG n 1 30 TYR n 1 31 TYR n 1 32 GLU n 1 33 GLU n 1 34 ASN n 1 35 GLY n 1 36 LEU n 1 37 ILE n 1 38 PHE n 1 39 PRO n 1 40 ALA n 1 41 ARG n 1 42 THR n 1 43 GLU n 1 44 GLY n 1 45 ASN n 1 46 ARG n 1 47 ARG n 1 48 LEU n 1 49 PHE n 1 50 SER n 1 51 PHE n 1 52 HIS n 1 53 ASP n 1 54 VAL n 1 55 ASP n 1 56 LYS n 1 57 LEU n 1 58 LEU n 1 59 GLU n 1 60 ILE n 1 61 LYS n 1 62 HIS n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 GLN n 1 67 GLY n 1 68 VAL n 1 69 ASN n 1 70 MET n 1 71 ALA n 1 72 GLY n 1 73 ILE n 1 74 LYS n 1 75 GLN n 1 76 ILE n 1 77 LEU n 1 78 ALA n 1 79 LYS n 1 80 ALA n 1 81 GLU n 1 82 ALA n 1 83 GLU n 1 84 PRO n 2 1 DA n 2 2 DT n 2 3 DT n 2 4 DC n 2 5 DT n 2 6 DG n 2 7 DA n 2 8 DC n 2 9 DA n 3 1 DT n 3 2 DG n 3 3 DT n 3 4 DC n 3 5 DA n 3 6 DG n 3 7 DT n 3 8 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'glnR, BSU17450' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 168 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis subsp. subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224308 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'synthetic DNA' ? 32630 ? 3 1 sample ? ? 'synthetic DNA' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CXS non-polymer . '3-CYCLOHEXYL-1-PROPYLSULFONIC ACID' ? 'C9 H19 N O3 S' 221.317 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET B . n A 1 2 SER 2 2 2 SER SER B . n A 1 3 ASP 3 3 3 ASP ASP B . n A 1 4 ASN 4 4 4 ASN ASN B . n A 1 5 ILE 5 5 5 ILE ILE B . n A 1 6 ARG 6 6 6 ARG ARG B . n A 1 7 ARG 7 7 7 ARG ARG B . n A 1 8 SER 8 8 8 SER SER B . n A 1 9 MET 9 9 9 MET MET B . n A 1 10 PRO 10 10 10 PRO PRO B . n A 1 11 LEU 11 11 11 LEU LEU B . n A 1 12 PHE 12 12 12 PHE PHE B . n A 1 13 PRO 13 13 13 PRO PRO B . n A 1 14 ILE 14 14 14 ILE ILE B . n A 1 15 GLY 15 15 15 GLY GLY B . n A 1 16 ILE 16 16 16 ILE ILE B . n A 1 17 VAL 17 17 17 VAL VAL B . n A 1 18 MET 18 18 18 MET MET B . n A 1 19 GLN 19 19 19 GLN GLN B . n A 1 20 LEU 20 20 20 LEU LEU B . n A 1 21 THR 21 21 21 THR THR B . n A 1 22 GLU 22 22 22 GLU GLU B . n A 1 23 LEU 23 23 23 LEU LEU B . n A 1 24 SER 24 24 24 SER SER B . n A 1 25 ALA 25 25 25 ALA ALA B . n A 1 26 ARG 26 26 26 ARG ARG B . n A 1 27 GLN 27 27 27 GLN GLN B . n A 1 28 ILE 28 28 28 ILE ILE B . n A 1 29 ARG 29 29 29 ARG ARG B . n A 1 30 TYR 30 30 30 TYR TYR B . n A 1 31 TYR 31 31 31 TYR TYR B . n A 1 32 GLU 32 32 32 GLU GLU B . n A 1 33 GLU 33 33 33 GLU GLU B . n A 1 34 ASN 34 34 34 ASN ASN B . n A 1 35 GLY 35 35 35 GLY GLY B . n A 1 36 LEU 36 36 36 LEU LEU B . n A 1 37 ILE 37 37 37 ILE ILE B . n A 1 38 PHE 38 38 38 PHE PHE B . n A 1 39 PRO 39 39 39 PRO PRO B . n A 1 40 ALA 40 40 40 ALA ALA B . n A 1 41 ARG 41 41 41 ARG ARG B . n A 1 42 THR 42 42 42 THR THR B . n A 1 43 GLU 43 43 43 GLU GLU B . n A 1 44 GLY 44 44 44 GLY GLY B . n A 1 45 ASN 45 45 45 ASN ASN B . n A 1 46 ARG 46 46 46 ARG ARG B . n A 1 47 ARG 47 47 47 ARG ARG B . n A 1 48 LEU 48 48 48 LEU LEU B . n A 1 49 PHE 49 49 49 PHE PHE B . n A 1 50 SER 50 50 50 SER SER B . n A 1 51 PHE 51 51 51 PHE PHE B . n A 1 52 HIS 52 52 52 HIS HIS B . n A 1 53 ASP 53 53 53 ASP ASP B . n A 1 54 VAL 54 54 54 VAL VAL B . n A 1 55 ASP 55 55 55 ASP ASP B . n A 1 56 LYS 56 56 56 LYS LYS B . n A 1 57 LEU 57 57 57 LEU LEU B . n A 1 58 LEU 58 58 58 LEU LEU B . n A 1 59 GLU 59 59 59 GLU GLU B . n A 1 60 ILE 60 60 60 ILE ILE B . n A 1 61 LYS 61 61 61 LYS LYS B . n A 1 62 HIS 62 62 62 HIS HIS B . n A 1 63 LEU 63 63 63 LEU LEU B . n A 1 64 ILE 64 64 64 ILE ILE B . n A 1 65 GLU 65 65 65 GLU GLU B . n A 1 66 GLN 66 66 66 GLN GLN B . n A 1 67 GLY 67 67 67 GLY GLY B . n A 1 68 VAL 68 68 68 VAL VAL B . n A 1 69 ASN 69 69 69 ASN ASN B . n A 1 70 MET 70 70 70 MET MET B . n A 1 71 ALA 71 71 71 ALA ALA B . n A 1 72 GLY 72 72 72 GLY GLY B . n A 1 73 ILE 73 73 73 ILE ILE B . n A 1 74 LYS 74 74 74 LYS LYS B . n A 1 75 GLN 75 75 75 GLN GLN B . n A 1 76 ILE 76 76 76 ILE ILE B . n A 1 77 LEU 77 77 77 LEU LEU B . n A 1 78 ALA 78 78 78 ALA ALA B . n A 1 79 LYS 79 79 79 LYS LYS B . n A 1 80 ALA 80 80 80 ALA ALA B . n A 1 81 GLU 81 81 81 GLU GLU B . n A 1 82 ALA 82 82 82 ALA ALA B . n A 1 83 GLU 83 83 83 GLU GLU B . n A 1 84 PRO 84 84 84 PRO PRO B . n B 1 1 MET 1 1 1 MET MET A . n B 1 2 SER 2 2 2 SER SER A . n B 1 3 ASP 3 3 3 ASP ASP A . n B 1 4 ASN 4 4 4 ASN ASN A . n B 1 5 ILE 5 5 5 ILE ILE A . n B 1 6 ARG 6 6 6 ARG ARG A . n B 1 7 ARG 7 7 7 ARG ARG A . n B 1 8 SER 8 8 8 SER SER A . n B 1 9 MET 9 9 9 MET MET A . n B 1 10 PRO 10 10 10 PRO PRO A . n B 1 11 LEU 11 11 11 LEU LEU A . n B 1 12 PHE 12 12 12 PHE PHE A . n B 1 13 PRO 13 13 13 PRO PRO A . n B 1 14 ILE 14 14 14 ILE ILE A . n B 1 15 GLY 15 15 15 GLY GLY A . n B 1 16 ILE 16 16 16 ILE ILE A . n B 1 17 VAL 17 17 17 VAL VAL A . n B 1 18 MET 18 18 18 MET MET A . n B 1 19 GLN 19 19 19 GLN GLN A . n B 1 20 LEU 20 20 20 LEU LEU A . n B 1 21 THR 21 21 21 THR THR A . n B 1 22 GLU 22 22 22 GLU GLU A . n B 1 23 LEU 23 23 23 LEU LEU A . n B 1 24 SER 24 24 24 SER SER A . n B 1 25 ALA 25 25 25 ALA ALA A . n B 1 26 ARG 26 26 26 ARG ARG A . n B 1 27 GLN 27 27 27 GLN GLN A . n B 1 28 ILE 28 28 28 ILE ILE A . n B 1 29 ARG 29 29 29 ARG ARG A . n B 1 30 TYR 30 30 30 TYR TYR A . n B 1 31 TYR 31 31 31 TYR TYR A . n B 1 32 GLU 32 32 32 GLU GLU A . n B 1 33 GLU 33 33 33 GLU GLU A . n B 1 34 ASN 34 34 34 ASN ASN A . n B 1 35 GLY 35 35 35 GLY GLY A . n B 1 36 LEU 36 36 36 LEU LEU A . n B 1 37 ILE 37 37 37 ILE ILE A . n B 1 38 PHE 38 38 38 PHE PHE A . n B 1 39 PRO 39 39 39 PRO PRO A . n B 1 40 ALA 40 40 40 ALA ALA A . n B 1 41 ARG 41 41 41 ARG ARG A . n B 1 42 THR 42 42 42 THR THR A . n B 1 43 GLU 43 43 43 GLU GLU A . n B 1 44 GLY 44 44 44 GLY GLY A . n B 1 45 ASN 45 45 45 ASN ASN A . n B 1 46 ARG 46 46 46 ARG ARG A . n B 1 47 ARG 47 47 47 ARG ARG A . n B 1 48 LEU 48 48 48 LEU LEU A . n B 1 49 PHE 49 49 49 PHE PHE A . n B 1 50 SER 50 50 50 SER SER A . n B 1 51 PHE 51 51 51 PHE PHE A . n B 1 52 HIS 52 52 52 HIS HIS A . n B 1 53 ASP 53 53 53 ASP ASP A . n B 1 54 VAL 54 54 54 VAL VAL A . n B 1 55 ASP 55 55 55 ASP ASP A . n B 1 56 LYS 56 56 56 LYS LYS A . n B 1 57 LEU 57 57 57 LEU LEU A . n B 1 58 LEU 58 58 58 LEU LEU A . n B 1 59 GLU 59 59 59 GLU GLU A . n B 1 60 ILE 60 60 60 ILE ILE A . n B 1 61 LYS 61 61 61 LYS LYS A . n B 1 62 HIS 62 62 62 HIS HIS A . n B 1 63 LEU 63 63 63 LEU LEU A . n B 1 64 ILE 64 64 64 ILE ILE A . n B 1 65 GLU 65 65 65 GLU GLU A . n B 1 66 GLN 66 66 66 GLN GLN A . n B 1 67 GLY 67 67 67 GLY GLY A . n B 1 68 VAL 68 68 68 VAL VAL A . n B 1 69 ASN 69 69 69 ASN ASN A . n B 1 70 MET 70 70 70 MET MET A . n B 1 71 ALA 71 71 71 ALA ALA A . n B 1 72 GLY 72 72 72 GLY GLY A . n B 1 73 ILE 73 73 73 ILE ILE A . n B 1 74 LYS 74 74 74 LYS LYS A . n B 1 75 GLN 75 75 75 GLN GLN A . n B 1 76 ILE 76 76 76 ILE ILE A . n B 1 77 LEU 77 77 77 LEU LEU A . n B 1 78 ALA 78 78 78 ALA ALA A . n B 1 79 LYS 79 79 79 LYS LYS A . n B 1 80 ALA 80 80 80 ALA ALA A . n B 1 81 GLU 81 81 81 GLU GLU A . n B 1 82 ALA 82 82 82 ALA ALA A . n B 1 83 GLU 83 83 83 GLU GLU A . n B 1 84 PRO 84 84 ? ? ? A . n C 2 1 DA 1 9 9 DA ADE D . n C 2 2 DT 2 10 10 DT THY D . n C 2 3 DT 3 11 11 DT THY D . n C 2 4 DC 4 12 12 DC CYT D . n C 2 5 DT 5 13 13 DT THY D . n C 2 6 DG 6 14 14 DG GUA D . n C 2 7 DA 7 15 15 DA ADE D . n C 2 8 DC 8 16 16 DC CYT D . n C 2 9 DA 9 17 17 DA ADE D . n D 3 1 DT 1 2 2 DT THY E . n D 3 2 DG 2 3 3 DG GUA E . n D 3 3 DT 3 4 4 DT THY E . n D 3 4 DC 4 5 5 DC CYT E . n D 3 5 DA 5 6 6 DA ADE E . n D 3 6 DG 6 7 7 DG GUA E . n D 3 7 DT 7 8 8 DT THY E . n D 3 8 DA 8 9 9 DA ADE E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 CXS 1 101 1204 CXS CXS A . F 5 HOH 1 101 16 HOH TIP B . F 5 HOH 2 102 18 HOH TIP B . F 5 HOH 3 103 29 HOH TIP B . F 5 HOH 4 104 30 HOH TIP B . F 5 HOH 5 105 32 HOH TIP B . F 5 HOH 6 106 38 HOH TIP B . F 5 HOH 7 107 41 HOH TIP B . F 5 HOH 8 108 51 HOH TIP B . F 5 HOH 9 109 54 HOH TIP B . F 5 HOH 10 110 55 HOH TIP B . F 5 HOH 11 111 58 HOH TIP B . F 5 HOH 12 112 66 HOH TIP B . F 5 HOH 13 113 68 HOH TIP B . F 5 HOH 14 114 70 HOH TIP B . G 5 HOH 1 201 1 HOH TIP A . G 5 HOH 2 202 2 HOH TIP A . G 5 HOH 3 203 6 HOH TIP A . G 5 HOH 4 204 9 HOH TIP A . G 5 HOH 5 205 11 HOH TIP A . G 5 HOH 6 206 15 HOH TIP A . G 5 HOH 7 207 19 HOH TIP A . G 5 HOH 8 208 21 HOH TIP A . G 5 HOH 9 209 22 HOH TIP A . G 5 HOH 10 210 23 HOH TIP A . G 5 HOH 11 211 25 HOH TIP A . G 5 HOH 12 212 34 HOH TIP A . G 5 HOH 13 213 35 HOH TIP A . G 5 HOH 14 214 37 HOH TIP A . G 5 HOH 15 215 39 HOH TIP A . G 5 HOH 16 216 46 HOH TIP A . G 5 HOH 17 217 47 HOH TIP A . G 5 HOH 18 218 53 HOH TIP A . G 5 HOH 19 219 56 HOH TIP A . G 5 HOH 20 220 60 HOH TIP A . G 5 HOH 21 221 61 HOH TIP A . G 5 HOH 22 222 62 HOH TIP A . G 5 HOH 23 223 64 HOH TIP A . G 5 HOH 24 224 71 HOH TIP A . H 5 HOH 1 101 4 HOH TIP D . H 5 HOH 2 102 8 HOH TIP D . H 5 HOH 3 103 10 HOH TIP D . H 5 HOH 4 104 26 HOH TIP D . H 5 HOH 5 105 40 HOH TIP D . H 5 HOH 6 106 67 HOH TIP D . I 5 HOH 1 101 3 HOH TIP E . I 5 HOH 2 102 13 HOH TIP E . I 5 HOH 3 103 17 HOH TIP E . I 5 HOH 4 104 20 HOH TIP E . I 5 HOH 5 105 31 HOH TIP E . I 5 HOH 6 106 36 HOH TIP E . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 2 PDB_EXTRACT 3.15 'July. 29, 2014' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 4 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 5 SCALA . ? ? ? ? 'data scaling' ? ? ? 6 SOLVE . ? ? ? ? phasing ? ? ? # _cell.entry_id 4R4E _cell.length_a 76.350 _cell.length_b 103.300 _cell.length_c 137.140 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4R4E _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4R4E _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 5.51 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 77.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '40% PEG 400, 0.1 M CAPS, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-12-20 _diffrn_detector.details 'Si(111)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double flat crystal, Si(111)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9790 1.0 2 0.97999 1.0 3 0.9250 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9790, 0.97999, 0.9250' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 # _reflns.entry_id 4R4E _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.52 _reflns.d_resolution_low 82.5 _reflns.number_all 17500 _reflns.number_obs 17350 _reflns.percent_possible_obs 98 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.041 _reflns.pdbx_netI_over_sigmaI 18.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4R4E _refine.ls_d_res_high 2.5700 _refine.ls_d_res_low 82.5 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.4000 _refine.ls_number_reflns_obs 17019 _refine.ls_number_reflns_all 17350 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all 0.256 _refine.ls_R_factor_obs 0.2543 _refine.ls_R_factor_R_work 0.2543 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2746 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 14.6000 _refine.ls_number_reflns_R_free 2571 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 82.7887 _refine.solvent_model_param_bsol 93.0714 _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 26.0010 _refine.aniso_B[2][2] -30.5540 _refine.aniso_B[3][3] 4.5530 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'Same crystal form but selenomet substituted. This starting model was used for final refinement with the 2.52 A native data' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 187.700 _refine.B_iso_min 33.850 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1350 _refine_hist.pdbx_number_atoms_nucleic_acid 342 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 1756 _refine_hist.d_res_high 2.5700 _refine_hist.d_res_low 82.5 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d ? 0.007 ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? 1.069 ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it ? 4.299 1.500 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 6.219 2.000 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 6.596 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 8.918 2.500 ? ? 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:protein.top 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:dna-rna_rep.param CNS_TOPPAR:dna-rna.top 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param CNS_TOPPAR:water.top 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param CNS_TOPPAR:ion.top 'X-RAY DIFFRACTION' 5 caps.param.txt caps.top 'X-RAY DIFFRACTION' # _struct.entry_id 4R4E _struct.title 'Structure of GlnR-DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R4E _struct_keywords.pdbx_keywords 'Transcription regulator/DNA' _struct_keywords.text ;TnrA/GlnR family, B. subtilis, nitrogen homeostasis, new member, TnrA/GlnR DNA-binding family of winged-HTH with c-terminal inducer/sensor domain, transcription, DNA, GS-Q, Nucleoid, Transcription regulator-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GLNR_BACSU P37582 1 ;MSDNIRRSMPLFPIGIVMQLTELSARQIRYYEENGLIFPARSEGNRRLFSFHDVDKLLEIKHLIEQGVNMAGIKQILAKA EAEP ; 1 ? 2 PDB 4R4E 4R4E 2 ? ? ? 3 PDB 4R4E 4R4E 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4R4E B 1 ? 84 ? P37582 1 ? 84 ? 1 84 2 1 4R4E A 1 ? 84 ? P37582 1 ? 84 ? 1 84 3 2 4R4E D 1 ? 9 ? 4R4E 9 ? 17 ? 9 17 4 3 4R4E E 1 ? 8 ? 4R4E 2 ? 9 ? 2 9 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4R4E THR B 42 ? UNP P37582 SER 42 conflict 42 1 2 4R4E THR A 42 ? UNP P37582 SER 42 conflict 42 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 3 ? SER A 8 ? ASP B 3 SER B 8 1 ? 6 HELX_P HELX_P2 2 ILE A 14 ? GLU A 22 ? ILE B 14 GLU B 22 1 ? 9 HELX_P HELX_P3 3 SER A 24 ? ASN A 34 ? SER B 24 ASN B 34 1 ? 11 HELX_P HELX_P4 4 SER A 50 ? GLN A 66 ? SER B 50 GLN B 66 1 ? 17 HELX_P HELX_P5 5 ASN A 69 ? GLU A 81 ? ASN B 69 GLU B 81 1 ? 13 HELX_P HELX_P6 6 SER B 2 ? MET B 9 ? SER A 2 MET A 9 1 ? 8 HELX_P HELX_P7 7 ILE B 14 ? GLU B 22 ? ILE A 14 GLU A 22 1 ? 9 HELX_P HELX_P8 8 SER B 24 ? ASN B 34 ? SER A 24 ASN A 34 1 ? 11 HELX_P HELX_P9 9 SER B 50 ? GLN B 66 ? SER A 50 GLN A 66 1 ? 17 HELX_P HELX_P10 10 ASN B 69 ? ALA B 82 ? ASN A 69 ALA A 82 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DT 2 N3 ? ? ? 1_555 D DA 8 N1 ? ? D DT 10 E DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DT 2 O4 ? ? ? 1_555 D DA 8 N6 ? ? D DT 10 E DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 6 N1 ? ? D DC 12 E DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 6 O6 ? ? D DC 12 E DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 6 N2 ? ? D DC 12 E DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 5 N1 ? ? D DT 13 E DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 5 N6 ? ? D DT 13 E DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 4 N3 ? ? D DG 14 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 4 O2 ? ? D DG 14 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 4 N4 ? ? D DG 14 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 3 N3 ? ? D DA 15 E DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 3 O4 ? ? D DA 15 E DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 2 N1 ? ? D DC 16 E DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 2 O6 ? ? D DC 16 E DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 2 N2 ? ? D DC 16 E DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 12 ? PRO A 13 ? PHE B 12 PRO B 13 A 2 ARG A 47 ? PHE A 49 ? ARG B 47 PHE B 49 A 3 ALA A 40 ? ARG A 41 ? ALA B 40 ARG B 41 B 1 PHE B 12 ? PRO B 13 ? PHE A 12 PRO A 13 B 2 ARG B 47 ? PHE B 49 ? ARG A 47 PHE A 49 B 3 ALA B 40 ? ARG B 41 ? ALA A 40 ARG A 41 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 12 ? N PHE B 12 O PHE A 49 ? O PHE B 49 A 2 3 O LEU A 48 ? O LEU B 48 N ALA A 40 ? N ALA B 40 B 1 2 N PHE B 12 ? N PHE A 12 O PHE B 49 ? O PHE A 49 B 2 3 O LEU B 48 ? O LEU A 48 N ALA B 40 ? N ALA A 40 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CXS _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE CXS A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ILE B 14 ? ILE A 14 . ? 1_555 ? 2 AC1 7 GLU B 33 ? GLU A 33 . ? 6_545 ? 3 AC1 7 GLY B 44 ? GLY A 44 . ? 1_555 ? 4 AC1 7 ASN B 45 ? ASN A 45 . ? 1_555 ? 5 AC1 7 ARG B 46 ? ARG A 46 . ? 1_555 ? 6 AC1 7 ARG B 47 ? ARG A 47 . ? 1_555 ? 7 AC1 7 HOH G . ? HOH A 207 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N1 D DA 9 ? ? 1_555 N1 D DA 9 ? ? 6_555 1.98 2 1 "O5'" D DA 9 ? ? 1_555 "O3'" E DA 9 ? ? 6_555 2.03 3 1 O D HOH 101 ? ? 1_555 O D HOH 101 ? ? 6_555 2.03 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER B 2 ? ? -72.73 21.59 2 1 LEU B 11 ? ? -130.44 -40.03 3 1 ILE B 14 ? ? -38.29 -38.51 4 1 LEU A 11 ? ? -157.20 -13.58 5 1 ALA A 40 ? ? -60.48 -172.14 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id PRO _pdbx_unobs_or_zero_occ_residues.auth_seq_id 84 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id PRO _pdbx_unobs_or_zero_occ_residues.label_seq_id 84 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CXS S S N N 74 CXS O1 O N N 75 CXS O2 O N N 76 CXS O3 O N N 77 CXS C1 C N N 78 CXS C2 C N N 79 CXS C3 C N N 80 CXS N N N N 81 CXS C4 C N N 82 CXS C5 C N N 83 CXS C6 C N N 84 CXS C7 C N N 85 CXS C8 C N N 86 CXS C9 C N N 87 CXS HO3 H N N 88 CXS H11 H N N 89 CXS H12 H N N 90 CXS H21 H N N 91 CXS H22 H N N 92 CXS H31 H N N 93 CXS H32 H N N 94 CXS HN H N N 95 CXS H4 H N N 96 CXS H51 H N N 97 CXS H52 H N N 98 CXS H61 H N N 99 CXS H62 H N N 100 CXS H71 H N N 101 CXS H72 H N N 102 CXS H81 H N N 103 CXS H82 H N N 104 CXS H91 H N N 105 CXS H92 H N N 106 DA OP3 O N N 107 DA P P N N 108 DA OP1 O N N 109 DA OP2 O N N 110 DA "O5'" O N N 111 DA "C5'" C N N 112 DA "C4'" C N R 113 DA "O4'" O N N 114 DA "C3'" C N S 115 DA "O3'" O N N 116 DA "C2'" C N N 117 DA "C1'" C N R 118 DA N9 N Y N 119 DA C8 C Y N 120 DA N7 N Y N 121 DA C5 C Y N 122 DA C6 C Y N 123 DA N6 N N N 124 DA N1 N Y N 125 DA C2 C Y N 126 DA N3 N Y N 127 DA C4 C Y N 128 DA HOP3 H N N 129 DA HOP2 H N N 130 DA "H5'" H N N 131 DA "H5''" H N N 132 DA "H4'" H N N 133 DA "H3'" H N N 134 DA "HO3'" H N N 135 DA "H2'" H N N 136 DA "H2''" H N N 137 DA "H1'" H N N 138 DA H8 H N N 139 DA H61 H N N 140 DA H62 H N N 141 DA H2 H N N 142 DC OP3 O N N 143 DC P P N N 144 DC OP1 O N N 145 DC OP2 O N N 146 DC "O5'" O N N 147 DC "C5'" C N N 148 DC "C4'" C N R 149 DC "O4'" O N N 150 DC "C3'" C N S 151 DC "O3'" O N N 152 DC "C2'" C N N 153 DC "C1'" C N R 154 DC N1 N N N 155 DC C2 C N N 156 DC O2 O N N 157 DC N3 N N N 158 DC C4 C N N 159 DC N4 N N N 160 DC C5 C N N 161 DC C6 C N N 162 DC HOP3 H N N 163 DC HOP2 H N N 164 DC "H5'" H N N 165 DC "H5''" H N N 166 DC "H4'" H N N 167 DC "H3'" H N N 168 DC "HO3'" H N N 169 DC "H2'" H N N 170 DC "H2''" H N N 171 DC "H1'" H N N 172 DC H41 H N N 173 DC H42 H N N 174 DC H5 H N N 175 DC H6 H N N 176 DG OP3 O N N 177 DG P P N N 178 DG OP1 O N N 179 DG OP2 O N N 180 DG "O5'" O N N 181 DG "C5'" C N N 182 DG "C4'" C N R 183 DG "O4'" O N N 184 DG "C3'" C N S 185 DG "O3'" O N N 186 DG "C2'" C N N 187 DG "C1'" C N R 188 DG N9 N Y N 189 DG C8 C Y N 190 DG N7 N Y N 191 DG C5 C Y N 192 DG C6 C N N 193 DG O6 O N N 194 DG N1 N N N 195 DG C2 C N N 196 DG N2 N N N 197 DG N3 N N N 198 DG C4 C Y N 199 DG HOP3 H N N 200 DG HOP2 H N N 201 DG "H5'" H N N 202 DG "H5''" H N N 203 DG "H4'" H N N 204 DG "H3'" H N N 205 DG "HO3'" H N N 206 DG "H2'" H N N 207 DG "H2''" H N N 208 DG "H1'" H N N 209 DG H8 H N N 210 DG H1 H N N 211 DG H21 H N N 212 DG H22 H N N 213 DT OP3 O N N 214 DT P P N N 215 DT OP1 O N N 216 DT OP2 O N N 217 DT "O5'" O N N 218 DT "C5'" C N N 219 DT "C4'" C N R 220 DT "O4'" O N N 221 DT "C3'" C N S 222 DT "O3'" O N N 223 DT "C2'" C N N 224 DT "C1'" C N R 225 DT N1 N N N 226 DT C2 C N N 227 DT O2 O N N 228 DT N3 N N N 229 DT C4 C N N 230 DT O4 O N N 231 DT C5 C N N 232 DT C7 C N N 233 DT C6 C N N 234 DT HOP3 H N N 235 DT HOP2 H N N 236 DT "H5'" H N N 237 DT "H5''" H N N 238 DT "H4'" H N N 239 DT "H3'" H N N 240 DT "HO3'" H N N 241 DT "H2'" H N N 242 DT "H2''" H N N 243 DT "H1'" H N N 244 DT H3 H N N 245 DT H71 H N N 246 DT H72 H N N 247 DT H73 H N N 248 DT H6 H N N 249 GLN N N N N 250 GLN CA C N S 251 GLN C C N N 252 GLN O O N N 253 GLN CB C N N 254 GLN CG C N N 255 GLN CD C N N 256 GLN OE1 O N N 257 GLN NE2 N N N 258 GLN OXT O N N 259 GLN H H N N 260 GLN H2 H N N 261 GLN HA H N N 262 GLN HB2 H N N 263 GLN HB3 H N N 264 GLN HG2 H N N 265 GLN HG3 H N N 266 GLN HE21 H N N 267 GLN HE22 H N N 268 GLN HXT H N N 269 GLU N N N N 270 GLU CA C N S 271 GLU C C N N 272 GLU O O N N 273 GLU CB C N N 274 GLU CG C N N 275 GLU CD C N N 276 GLU OE1 O N N 277 GLU OE2 O N N 278 GLU OXT O N N 279 GLU H H N N 280 GLU H2 H N N 281 GLU HA H N N 282 GLU HB2 H N N 283 GLU HB3 H N N 284 GLU HG2 H N N 285 GLU HG3 H N N 286 GLU HE2 H N N 287 GLU HXT H N N 288 GLY N N N N 289 GLY CA C N N 290 GLY C C N N 291 GLY O O N N 292 GLY OXT O N N 293 GLY H H N N 294 GLY H2 H N N 295 GLY HA2 H N N 296 GLY HA3 H N N 297 GLY HXT H N N 298 HIS N N N N 299 HIS CA C N S 300 HIS C C N N 301 HIS O O N N 302 HIS CB C N N 303 HIS CG C Y N 304 HIS ND1 N Y N 305 HIS CD2 C Y N 306 HIS CE1 C Y N 307 HIS NE2 N Y N 308 HIS OXT O N N 309 HIS H H N N 310 HIS H2 H N N 311 HIS HA H N N 312 HIS HB2 H N N 313 HIS HB3 H N N 314 HIS HD1 H N N 315 HIS HD2 H N N 316 HIS HE1 H N N 317 HIS HE2 H N N 318 HIS HXT H N N 319 HOH O O N N 320 HOH H1 H N N 321 HOH H2 H N N 322 ILE N N N N 323 ILE CA C N S 324 ILE C C N N 325 ILE O O N N 326 ILE CB C N S 327 ILE CG1 C N N 328 ILE CG2 C N N 329 ILE CD1 C N N 330 ILE OXT O N N 331 ILE H H N N 332 ILE H2 H N N 333 ILE HA H N N 334 ILE HB H N N 335 ILE HG12 H N N 336 ILE HG13 H N N 337 ILE HG21 H N N 338 ILE HG22 H N N 339 ILE HG23 H N N 340 ILE HD11 H N N 341 ILE HD12 H N N 342 ILE HD13 H N N 343 ILE HXT H N N 344 LEU N N N N 345 LEU CA C N S 346 LEU C C N N 347 LEU O O N N 348 LEU CB C N N 349 LEU CG C N N 350 LEU CD1 C N N 351 LEU CD2 C N N 352 LEU OXT O N N 353 LEU H H N N 354 LEU H2 H N N 355 LEU HA H N N 356 LEU HB2 H N N 357 LEU HB3 H N N 358 LEU HG H N N 359 LEU HD11 H N N 360 LEU HD12 H N N 361 LEU HD13 H N N 362 LEU HD21 H N N 363 LEU HD22 H N N 364 LEU HD23 H N N 365 LEU HXT H N N 366 LYS N N N N 367 LYS CA C N S 368 LYS C C N N 369 LYS O O N N 370 LYS CB C N N 371 LYS CG C N N 372 LYS CD C N N 373 LYS CE C N N 374 LYS NZ N N N 375 LYS OXT O N N 376 LYS H H N N 377 LYS H2 H N N 378 LYS HA H N N 379 LYS HB2 H N N 380 LYS HB3 H N N 381 LYS HG2 H N N 382 LYS HG3 H N N 383 LYS HD2 H N N 384 LYS HD3 H N N 385 LYS HE2 H N N 386 LYS HE3 H N N 387 LYS HZ1 H N N 388 LYS HZ2 H N N 389 LYS HZ3 H N N 390 LYS HXT H N N 391 MET N N N N 392 MET CA C N S 393 MET C C N N 394 MET O O N N 395 MET CB C N N 396 MET CG C N N 397 MET SD S N N 398 MET CE C N N 399 MET OXT O N N 400 MET H H N N 401 MET H2 H N N 402 MET HA H N N 403 MET HB2 H N N 404 MET HB3 H N N 405 MET HG2 H N N 406 MET HG3 H N N 407 MET HE1 H N N 408 MET HE2 H N N 409 MET HE3 H N N 410 MET HXT H N N 411 PHE N N N N 412 PHE CA C N S 413 PHE C C N N 414 PHE O O N N 415 PHE CB C N N 416 PHE CG C Y N 417 PHE CD1 C Y N 418 PHE CD2 C Y N 419 PHE CE1 C Y N 420 PHE CE2 C Y N 421 PHE CZ C Y N 422 PHE OXT O N N 423 PHE H H N N 424 PHE H2 H N N 425 PHE HA H N N 426 PHE HB2 H N N 427 PHE HB3 H N N 428 PHE HD1 H N N 429 PHE HD2 H N N 430 PHE HE1 H N N 431 PHE HE2 H N N 432 PHE HZ H N N 433 PHE HXT H N N 434 PRO N N N N 435 PRO CA C N S 436 PRO C C N N 437 PRO O O N N 438 PRO CB C N N 439 PRO CG C N N 440 PRO CD C N N 441 PRO OXT O N N 442 PRO H H N N 443 PRO HA H N N 444 PRO HB2 H N N 445 PRO HB3 H N N 446 PRO HG2 H N N 447 PRO HG3 H N N 448 PRO HD2 H N N 449 PRO HD3 H N N 450 PRO HXT H N N 451 SER N N N N 452 SER CA C N S 453 SER C C N N 454 SER O O N N 455 SER CB C N N 456 SER OG O N N 457 SER OXT O N N 458 SER H H N N 459 SER H2 H N N 460 SER HA H N N 461 SER HB2 H N N 462 SER HB3 H N N 463 SER HG H N N 464 SER HXT H N N 465 THR N N N N 466 THR CA C N S 467 THR C C N N 468 THR O O N N 469 THR CB C N R 470 THR OG1 O N N 471 THR CG2 C N N 472 THR OXT O N N 473 THR H H N N 474 THR H2 H N N 475 THR HA H N N 476 THR HB H N N 477 THR HG1 H N N 478 THR HG21 H N N 479 THR HG22 H N N 480 THR HG23 H N N 481 THR HXT H N N 482 TYR N N N N 483 TYR CA C N S 484 TYR C C N N 485 TYR O O N N 486 TYR CB C N N 487 TYR CG C Y N 488 TYR CD1 C Y N 489 TYR CD2 C Y N 490 TYR CE1 C Y N 491 TYR CE2 C Y N 492 TYR CZ C Y N 493 TYR OH O N N 494 TYR OXT O N N 495 TYR H H N N 496 TYR H2 H N N 497 TYR HA H N N 498 TYR HB2 H N N 499 TYR HB3 H N N 500 TYR HD1 H N N 501 TYR HD2 H N N 502 TYR HE1 H N N 503 TYR HE2 H N N 504 TYR HH H N N 505 TYR HXT H N N 506 VAL N N N N 507 VAL CA C N S 508 VAL C C N N 509 VAL O O N N 510 VAL CB C N N 511 VAL CG1 C N N 512 VAL CG2 C N N 513 VAL OXT O N N 514 VAL H H N N 515 VAL H2 H N N 516 VAL HA H N N 517 VAL HB H N N 518 VAL HG11 H N N 519 VAL HG12 H N N 520 VAL HG13 H N N 521 VAL HG21 H N N 522 VAL HG22 H N N 523 VAL HG23 H N N 524 VAL HXT H N N 525 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CXS S O1 doub N N 70 CXS S O2 doub N N 71 CXS S O3 sing N N 72 CXS S C1 sing N N 73 CXS O3 HO3 sing N N 74 CXS C1 C2 sing N N 75 CXS C1 H11 sing N N 76 CXS C1 H12 sing N N 77 CXS C2 C3 sing N N 78 CXS C2 H21 sing N N 79 CXS C2 H22 sing N N 80 CXS C3 N sing N N 81 CXS C3 H31 sing N N 82 CXS C3 H32 sing N N 83 CXS N C4 sing N N 84 CXS N HN sing N N 85 CXS C4 C5 sing N N 86 CXS C4 C9 sing N N 87 CXS C4 H4 sing N N 88 CXS C5 C6 sing N N 89 CXS C5 H51 sing N N 90 CXS C5 H52 sing N N 91 CXS C6 C7 sing N N 92 CXS C6 H61 sing N N 93 CXS C6 H62 sing N N 94 CXS C7 C8 sing N N 95 CXS C7 H71 sing N N 96 CXS C7 H72 sing N N 97 CXS C8 C9 sing N N 98 CXS C8 H81 sing N N 99 CXS C8 H82 sing N N 100 CXS C9 H91 sing N N 101 CXS C9 H92 sing N N 102 DA OP3 P sing N N 103 DA OP3 HOP3 sing N N 104 DA P OP1 doub N N 105 DA P OP2 sing N N 106 DA P "O5'" sing N N 107 DA OP2 HOP2 sing N N 108 DA "O5'" "C5'" sing N N 109 DA "C5'" "C4'" sing N N 110 DA "C5'" "H5'" sing N N 111 DA "C5'" "H5''" sing N N 112 DA "C4'" "O4'" sing N N 113 DA "C4'" "C3'" sing N N 114 DA "C4'" "H4'" sing N N 115 DA "O4'" "C1'" sing N N 116 DA "C3'" "O3'" sing N N 117 DA "C3'" "C2'" sing N N 118 DA "C3'" "H3'" sing N N 119 DA "O3'" "HO3'" sing N N 120 DA "C2'" "C1'" sing N N 121 DA "C2'" "H2'" sing N N 122 DA "C2'" "H2''" sing N N 123 DA "C1'" N9 sing N N 124 DA "C1'" "H1'" sing N N 125 DA N9 C8 sing Y N 126 DA N9 C4 sing Y N 127 DA C8 N7 doub Y N 128 DA C8 H8 sing N N 129 DA N7 C5 sing Y N 130 DA C5 C6 sing Y N 131 DA C5 C4 doub Y N 132 DA C6 N6 sing N N 133 DA C6 N1 doub Y N 134 DA N6 H61 sing N N 135 DA N6 H62 sing N N 136 DA N1 C2 sing Y N 137 DA C2 N3 doub Y N 138 DA C2 H2 sing N N 139 DA N3 C4 sing Y N 140 DC OP3 P sing N N 141 DC OP3 HOP3 sing N N 142 DC P OP1 doub N N 143 DC P OP2 sing N N 144 DC P "O5'" sing N N 145 DC OP2 HOP2 sing N N 146 DC "O5'" "C5'" sing N N 147 DC "C5'" "C4'" sing N N 148 DC "C5'" "H5'" sing N N 149 DC "C5'" "H5''" sing N N 150 DC "C4'" "O4'" sing N N 151 DC "C4'" "C3'" sing N N 152 DC "C4'" "H4'" sing N N 153 DC "O4'" "C1'" sing N N 154 DC "C3'" "O3'" sing N N 155 DC "C3'" "C2'" sing N N 156 DC "C3'" "H3'" sing N N 157 DC "O3'" "HO3'" sing N N 158 DC "C2'" "C1'" sing N N 159 DC "C2'" "H2'" sing N N 160 DC "C2'" "H2''" sing N N 161 DC "C1'" N1 sing N N 162 DC "C1'" "H1'" sing N N 163 DC N1 C2 sing N N 164 DC N1 C6 sing N N 165 DC C2 O2 doub N N 166 DC C2 N3 sing N N 167 DC N3 C4 doub N N 168 DC C4 N4 sing N N 169 DC C4 C5 sing N N 170 DC N4 H41 sing N N 171 DC N4 H42 sing N N 172 DC C5 C6 doub N N 173 DC C5 H5 sing N N 174 DC C6 H6 sing N N 175 DG OP3 P sing N N 176 DG OP3 HOP3 sing N N 177 DG P OP1 doub N N 178 DG P OP2 sing N N 179 DG P "O5'" sing N N 180 DG OP2 HOP2 sing N N 181 DG "O5'" "C5'" sing N N 182 DG "C5'" "C4'" sing N N 183 DG "C5'" "H5'" sing N N 184 DG "C5'" "H5''" sing N N 185 DG "C4'" "O4'" sing N N 186 DG "C4'" "C3'" sing N N 187 DG "C4'" "H4'" sing N N 188 DG "O4'" "C1'" sing N N 189 DG "C3'" "O3'" sing N N 190 DG "C3'" "C2'" sing N N 191 DG "C3'" "H3'" sing N N 192 DG "O3'" "HO3'" sing N N 193 DG "C2'" "C1'" sing N N 194 DG "C2'" "H2'" sing N N 195 DG "C2'" "H2''" sing N N 196 DG "C1'" N9 sing N N 197 DG "C1'" "H1'" sing N N 198 DG N9 C8 sing Y N 199 DG N9 C4 sing Y N 200 DG C8 N7 doub Y N 201 DG C8 H8 sing N N 202 DG N7 C5 sing Y N 203 DG C5 C6 sing N N 204 DG C5 C4 doub Y N 205 DG C6 O6 doub N N 206 DG C6 N1 sing N N 207 DG N1 C2 sing N N 208 DG N1 H1 sing N N 209 DG C2 N2 sing N N 210 DG C2 N3 doub N N 211 DG N2 H21 sing N N 212 DG N2 H22 sing N N 213 DG N3 C4 sing N N 214 DT OP3 P sing N N 215 DT OP3 HOP3 sing N N 216 DT P OP1 doub N N 217 DT P OP2 sing N N 218 DT P "O5'" sing N N 219 DT OP2 HOP2 sing N N 220 DT "O5'" "C5'" sing N N 221 DT "C5'" "C4'" sing N N 222 DT "C5'" "H5'" sing N N 223 DT "C5'" "H5''" sing N N 224 DT "C4'" "O4'" sing N N 225 DT "C4'" "C3'" sing N N 226 DT "C4'" "H4'" sing N N 227 DT "O4'" "C1'" sing N N 228 DT "C3'" "O3'" sing N N 229 DT "C3'" "C2'" sing N N 230 DT "C3'" "H3'" sing N N 231 DT "O3'" "HO3'" sing N N 232 DT "C2'" "C1'" sing N N 233 DT "C2'" "H2'" sing N N 234 DT "C2'" "H2''" sing N N 235 DT "C1'" N1 sing N N 236 DT "C1'" "H1'" sing N N 237 DT N1 C2 sing N N 238 DT N1 C6 sing N N 239 DT C2 O2 doub N N 240 DT C2 N3 sing N N 241 DT N3 C4 sing N N 242 DT N3 H3 sing N N 243 DT C4 O4 doub N N 244 DT C4 C5 sing N N 245 DT C5 C7 sing N N 246 DT C5 C6 doub N N 247 DT C7 H71 sing N N 248 DT C7 H72 sing N N 249 DT C7 H73 sing N N 250 DT C6 H6 sing N N 251 GLN N CA sing N N 252 GLN N H sing N N 253 GLN N H2 sing N N 254 GLN CA C sing N N 255 GLN CA CB sing N N 256 GLN CA HA sing N N 257 GLN C O doub N N 258 GLN C OXT sing N N 259 GLN CB CG sing N N 260 GLN CB HB2 sing N N 261 GLN CB HB3 sing N N 262 GLN CG CD sing N N 263 GLN CG HG2 sing N N 264 GLN CG HG3 sing N N 265 GLN CD OE1 doub N N 266 GLN CD NE2 sing N N 267 GLN NE2 HE21 sing N N 268 GLN NE2 HE22 sing N N 269 GLN OXT HXT sing N N 270 GLU N CA sing N N 271 GLU N H sing N N 272 GLU N H2 sing N N 273 GLU CA C sing N N 274 GLU CA CB sing N N 275 GLU CA HA sing N N 276 GLU C O doub N N 277 GLU C OXT sing N N 278 GLU CB CG sing N N 279 GLU CB HB2 sing N N 280 GLU CB HB3 sing N N 281 GLU CG CD sing N N 282 GLU CG HG2 sing N N 283 GLU CG HG3 sing N N 284 GLU CD OE1 doub N N 285 GLU CD OE2 sing N N 286 GLU OE2 HE2 sing N N 287 GLU OXT HXT sing N N 288 GLY N CA sing N N 289 GLY N H sing N N 290 GLY N H2 sing N N 291 GLY CA C sing N N 292 GLY CA HA2 sing N N 293 GLY CA HA3 sing N N 294 GLY C O doub N N 295 GLY C OXT sing N N 296 GLY OXT HXT sing N N 297 HIS N CA sing N N 298 HIS N H sing N N 299 HIS N H2 sing N N 300 HIS CA C sing N N 301 HIS CA CB sing N N 302 HIS CA HA sing N N 303 HIS C O doub N N 304 HIS C OXT sing N N 305 HIS CB CG sing N N 306 HIS CB HB2 sing N N 307 HIS CB HB3 sing N N 308 HIS CG ND1 sing Y N 309 HIS CG CD2 doub Y N 310 HIS ND1 CE1 doub Y N 311 HIS ND1 HD1 sing N N 312 HIS CD2 NE2 sing Y N 313 HIS CD2 HD2 sing N N 314 HIS CE1 NE2 sing Y N 315 HIS CE1 HE1 sing N N 316 HIS NE2 HE2 sing N N 317 HIS OXT HXT sing N N 318 HOH O H1 sing N N 319 HOH O H2 sing N N 320 ILE N CA sing N N 321 ILE N H sing N N 322 ILE N H2 sing N N 323 ILE CA C sing N N 324 ILE CA CB sing N N 325 ILE CA HA sing N N 326 ILE C O doub N N 327 ILE C OXT sing N N 328 ILE CB CG1 sing N N 329 ILE CB CG2 sing N N 330 ILE CB HB sing N N 331 ILE CG1 CD1 sing N N 332 ILE CG1 HG12 sing N N 333 ILE CG1 HG13 sing N N 334 ILE CG2 HG21 sing N N 335 ILE CG2 HG22 sing N N 336 ILE CG2 HG23 sing N N 337 ILE CD1 HD11 sing N N 338 ILE CD1 HD12 sing N N 339 ILE CD1 HD13 sing N N 340 ILE OXT HXT sing N N 341 LEU N CA sing N N 342 LEU N H sing N N 343 LEU N H2 sing N N 344 LEU CA C sing N N 345 LEU CA CB sing N N 346 LEU CA HA sing N N 347 LEU C O doub N N 348 LEU C OXT sing N N 349 LEU CB CG sing N N 350 LEU CB HB2 sing N N 351 LEU CB HB3 sing N N 352 LEU CG CD1 sing N N 353 LEU CG CD2 sing N N 354 LEU CG HG sing N N 355 LEU CD1 HD11 sing N N 356 LEU CD1 HD12 sing N N 357 LEU CD1 HD13 sing N N 358 LEU CD2 HD21 sing N N 359 LEU CD2 HD22 sing N N 360 LEU CD2 HD23 sing N N 361 LEU OXT HXT sing N N 362 LYS N CA sing N N 363 LYS N H sing N N 364 LYS N H2 sing N N 365 LYS CA C sing N N 366 LYS CA CB sing N N 367 LYS CA HA sing N N 368 LYS C O doub N N 369 LYS C OXT sing N N 370 LYS CB CG sing N N 371 LYS CB HB2 sing N N 372 LYS CB HB3 sing N N 373 LYS CG CD sing N N 374 LYS CG HG2 sing N N 375 LYS CG HG3 sing N N 376 LYS CD CE sing N N 377 LYS CD HD2 sing N N 378 LYS CD HD3 sing N N 379 LYS CE NZ sing N N 380 LYS CE HE2 sing N N 381 LYS CE HE3 sing N N 382 LYS NZ HZ1 sing N N 383 LYS NZ HZ2 sing N N 384 LYS NZ HZ3 sing N N 385 LYS OXT HXT sing N N 386 MET N CA sing N N 387 MET N H sing N N 388 MET N H2 sing N N 389 MET CA C sing N N 390 MET CA CB sing N N 391 MET CA HA sing N N 392 MET C O doub N N 393 MET C OXT sing N N 394 MET CB CG sing N N 395 MET CB HB2 sing N N 396 MET CB HB3 sing N N 397 MET CG SD sing N N 398 MET CG HG2 sing N N 399 MET CG HG3 sing N N 400 MET SD CE sing N N 401 MET CE HE1 sing N N 402 MET CE HE2 sing N N 403 MET CE HE3 sing N N 404 MET OXT HXT sing N N 405 PHE N CA sing N N 406 PHE N H sing N N 407 PHE N H2 sing N N 408 PHE CA C sing N N 409 PHE CA CB sing N N 410 PHE CA HA sing N N 411 PHE C O doub N N 412 PHE C OXT sing N N 413 PHE CB CG sing N N 414 PHE CB HB2 sing N N 415 PHE CB HB3 sing N N 416 PHE CG CD1 doub Y N 417 PHE CG CD2 sing Y N 418 PHE CD1 CE1 sing Y N 419 PHE CD1 HD1 sing N N 420 PHE CD2 CE2 doub Y N 421 PHE CD2 HD2 sing N N 422 PHE CE1 CZ doub Y N 423 PHE CE1 HE1 sing N N 424 PHE CE2 CZ sing Y N 425 PHE CE2 HE2 sing N N 426 PHE CZ HZ sing N N 427 PHE OXT HXT sing N N 428 PRO N CA sing N N 429 PRO N CD sing N N 430 PRO N H sing N N 431 PRO CA C sing N N 432 PRO CA CB sing N N 433 PRO CA HA sing N N 434 PRO C O doub N N 435 PRO C OXT sing N N 436 PRO CB CG sing N N 437 PRO CB HB2 sing N N 438 PRO CB HB3 sing N N 439 PRO CG CD sing N N 440 PRO CG HG2 sing N N 441 PRO CG HG3 sing N N 442 PRO CD HD2 sing N N 443 PRO CD HD3 sing N N 444 PRO OXT HXT sing N N 445 SER N CA sing N N 446 SER N H sing N N 447 SER N H2 sing N N 448 SER CA C sing N N 449 SER CA CB sing N N 450 SER CA HA sing N N 451 SER C O doub N N 452 SER C OXT sing N N 453 SER CB OG sing N N 454 SER CB HB2 sing N N 455 SER CB HB3 sing N N 456 SER OG HG sing N N 457 SER OXT HXT sing N N 458 THR N CA sing N N 459 THR N H sing N N 460 THR N H2 sing N N 461 THR CA C sing N N 462 THR CA CB sing N N 463 THR CA HA sing N N 464 THR C O doub N N 465 THR C OXT sing N N 466 THR CB OG1 sing N N 467 THR CB CG2 sing N N 468 THR CB HB sing N N 469 THR OG1 HG1 sing N N 470 THR CG2 HG21 sing N N 471 THR CG2 HG22 sing N N 472 THR CG2 HG23 sing N N 473 THR OXT HXT sing N N 474 TYR N CA sing N N 475 TYR N H sing N N 476 TYR N H2 sing N N 477 TYR CA C sing N N 478 TYR CA CB sing N N 479 TYR CA HA sing N N 480 TYR C O doub N N 481 TYR C OXT sing N N 482 TYR CB CG sing N N 483 TYR CB HB2 sing N N 484 TYR CB HB3 sing N N 485 TYR CG CD1 doub Y N 486 TYR CG CD2 sing Y N 487 TYR CD1 CE1 sing Y N 488 TYR CD1 HD1 sing N N 489 TYR CD2 CE2 doub Y N 490 TYR CD2 HD2 sing N N 491 TYR CE1 CZ doub Y N 492 TYR CE1 HE1 sing N N 493 TYR CE2 CZ sing Y N 494 TYR CE2 HE2 sing N N 495 TYR CZ OH sing N N 496 TYR OH HH sing N N 497 TYR OXT HXT sing N N 498 VAL N CA sing N N 499 VAL N H sing N N 500 VAL N H2 sing N N 501 VAL CA C sing N N 502 VAL CA CB sing N N 503 VAL CA HA sing N N 504 VAL C O doub N N 505 VAL C OXT sing N N 506 VAL CB CG1 sing N N 507 VAL CB CG2 sing N N 508 VAL CB HB sing N N 509 VAL CG1 HG11 sing N N 510 VAL CG1 HG12 sing N N 511 VAL CG1 HG13 sing N N 512 VAL CG2 HG21 sing N N 513 VAL CG2 HG22 sing N N 514 VAL CG2 HG23 sing N N 515 VAL OXT HXT sing N N 516 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4R4E 'double helix' 4R4E 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DT 2 1_555 D DA 8 1_555 -0.834 -0.141 0.084 -6.509 -12.894 -1.893 1 D_DT10:DA9_E D 10 ? E 9 ? 20 1 1 C DC 4 1_555 D DG 6 1_555 0.005 -0.175 -0.102 -9.889 -4.276 1.494 2 D_DC12:DG7_E D 12 ? E 7 ? 19 1 1 C DT 5 1_555 D DA 5 1_555 -0.213 -0.291 -0.094 -1.129 -7.598 -2.599 3 D_DT13:DA6_E D 13 ? E 6 ? 20 1 1 C DG 6 1_555 D DC 4 1_555 1.126 0.024 -0.299 -5.050 -7.662 -7.215 4 D_DG14:DC5_E D 14 ? E 5 ? 19 1 1 C DA 7 1_555 D DT 3 1_555 0.175 -0.319 -0.124 -5.095 -1.720 4.811 5 D_DA15:DT4_E D 15 ? E 4 ? 20 1 1 C DC 8 1_555 D DG 2 1_555 0.392 -0.164 -0.113 4.712 -4.972 3.216 6 D_DC16:DG3_E D 16 ? E 3 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DT 2 1_555 D DA 8 1_555 C DC 4 1_555 D DG 6 1_555 0.132 -1.073 6.735 -3.660 4.623 72.698 -1.211 -0.355 6.654 3.894 3.082 72.904 1 DD_DT10DC12:DG7DA9_EE D 10 ? E 9 ? D 12 ? E 7 ? 1 C DC 4 1_555 D DG 6 1_555 C DT 5 1_555 D DA 5 1_555 -0.404 0.544 3.300 -2.210 12.885 30.323 -1.343 0.318 3.276 23.318 3.999 32.960 2 DD_DC12DT13:DA6DG7_EE D 12 ? E 7 ? D 13 ? E 6 ? 1 C DT 5 1_555 D DA 5 1_555 C DG 6 1_555 D DC 4 1_555 -0.267 -0.393 3.679 1.258 4.224 37.303 -1.227 0.598 3.604 6.575 -1.959 37.553 3 DD_DT13DG14:DC5DA6_EE D 13 ? E 6 ? D 14 ? E 5 ? 1 C DG 6 1_555 D DC 4 1_555 C DA 7 1_555 D DT 3 1_555 1.009 -0.016 3.347 1.082 5.527 28.487 -1.284 -1.768 3.320 11.094 -2.171 29.027 4 DD_DG14DA15:DT4DC5_EE D 14 ? E 5 ? D 15 ? E 4 ? 1 C DA 7 1_555 D DT 3 1_555 C DC 8 1_555 D DG 2 1_555 -0.867 0.107 3.215 -1.128 7.211 32.304 -1.019 1.334 3.191 12.759 1.995 33.097 5 DD_DA15DC16:DG3DT4_EE D 15 ? E 4 ? D 16 ? E 3 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Same crystal form but selenomet substituted. This starting model was used for final refinement with the 2.52 A native data' # _atom_sites.entry_id 4R4E _atom_sites.fract_transf_matrix[1][1] 0.013098 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009681 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007292 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_