HEADER HYDROLASE 20-AUG-14 4R4X TITLE STRUCTURE OF PNGF-II IN C2 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PNGF-II; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PNGF-II; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ELIZABETHKINGIA MENINGOSEPTICA; SOURCE 3 ORGANISM_TAXID: 238; SOURCE 4 STRAIN: FMS-007; SOURCE 5 GENE: CP006576; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS N-GLYCANASE (PNGASE), PNGASE F, DEGLYCOSYLATION, N-GLYCOPROTEINS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.SUN,X.YU,CELIMUGE,L.WANG,M.LI,J.GAN,D.QU,J.MA,L.CHEN REVDAT 3 06-DEC-23 4R4X 1 REMARK REVDAT 2 08-NOV-23 4R4X 1 REMARK LINK REVDAT 1 28-JAN-15 4R4X 0 JRNL AUTH G.SUN,X.YU,CELIMUGE,L.WANG,M.LI,J.GAN,D.QU,J.MA,L.CHEN JRNL TITL IDENTIFICATION AND CHARACTERIZATION OF A NOVEL PROKARYOTIC JRNL TITL 2 PEPTIDE: N-GLYCOSIDASE FROM ELIZABETHKINGIA MENINGOSEPTICA JRNL REF J.BIOL.CHEM. 2015 JRNL REFN ESSN 1083-351X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 45187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2398 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2776 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4307 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 411 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : 0.76000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.634 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4470 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4243 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6059 ; 1.386 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9780 ; 0.750 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 558 ; 6.484 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;38.411 ;25.602 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 762 ;13.166 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ; 9.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 663 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5157 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1058 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, SF FILE CONTAINS FRIEDEL PAIRS UNDER I/F_MINUS AND I/ REMARK 3 F_PLUS COLUMNS REMARK 4 REMARK 4 4R4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 196 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47585 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 FOR SHELL : 3.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KS7 REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG4000, 0.01M MGCL2, 0.2M KCL, REMARK 280 0.05M SODIUM CACODYLATE PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.70000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.70000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 18 REMARK 465 ASN A 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 541 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 35 -145.63 -151.73 REMARK 500 SER A 108 -8.51 67.15 REMARK 500 VAL A 190 -65.68 -120.72 REMARK 500 ASP A 205 -166.37 -123.63 REMARK 500 ALA A 392 28.83 -143.18 REMARK 500 ASN A 487 22.80 83.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE1 REMARK 620 2 GLU A 52 OE2 54.3 REMARK 620 3 ASP A 159 OD2 114.9 61.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 542 NE2 REMARK 620 2 HIS A 545 NE2 117.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KS7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PUTATIVE PEPTIDE:N-GLYCOSIDASE F (PNGASE F) REMARK 900 (YP_210507.1) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.30 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 4R4Z RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT REMARK 999 KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. DBREF 4R4X A 1 546 PDB 4R4X 4R4X 1 546 SEQRES 1 A 546 ALA GLN THR TYR GLU ILE THR TYR GLN ASN SER PHE GLU SEQRES 2 A 546 GLY LYS ILE ASN PRO ASN GLN ASN HIS ILE ILE SER ILE SEQRES 3 A 546 THR ASN SER ASP LYS THR LEU LEU PHE ASN GLU LYS ILE SEQRES 4 A 546 LYS ASN LYS LYS ALA ASP PHE PRO PHE GLU VAL ASN GLU SEQRES 5 A 546 ILE ASN ARG LYS ASN ASN GLU VAL SER GLN PHE ALA PHE SEQRES 6 A 546 LEU ASN ASN ASN GLU ILE VAL LYS THR SER ASP ASN THR SEQRES 7 A 546 ILE LEU ALA LYS GLN GLU PHE LYS PRO THR SER GLU THR SEQRES 8 A 546 GLY LYS ILE LEU GLY TYR ASN VAL LYS LYS ALA VAL THR SEQRES 9 A 546 SER VAL ASN SER ASN THR ILE GLU VAL TRP TYR THR ASN SEQRES 10 A 546 ASP LEU LYS VAL LYS GLY GLY PRO SER ILE LEU GLY GLN SEQRES 11 A 546 ASP LEU GLY LEU VAL LEU LYS THR VAL ARG ASN GLY SER SEQRES 12 A 546 SER VAL VAL GLU ALA THR SER VAL LYS LYS ILE LYS ALA SEQRES 13 A 546 LEU ASP ASP GLN SER LEU PHE ASN GLY LYS ASN ILE THR SEQRES 14 A 546 GLU LYS ASP ALA LEU THR TYR LYS ASP MSE ILE TRP LYS SEQRES 15 A 546 SER ARG PHE ILE THR ILE PRO VAL PHE GLU ASN GLU THR SEQRES 16 A 546 ILE ASN PHE SER ASP ALA SER LYS SER ASP GLN VAL ILE SEQRES 17 A 546 GLN ARG PHE GLY ASN GLY THR ILE ILE LEU LYS LYS VAL SEQRES 18 A 546 LYS ILE PRO GLU ILE LYS GLN GLY ASN THR ILE PHE VAL SEQRES 19 A 546 GLU LEU LYS GLN LYS SER ASN GLY ASP ALA TYR ASP ARG SEQRES 20 A 546 THR GLY ASP VAL PHE ILE ILE PRO GLN GLU ARG ALA ILE SEQRES 21 A 546 SER TYR TYR THR GLY LEU THR GLN GLY VAL LYS SER LEU SEQRES 22 A 546 PRO VAL TYR GLN ASN GLY ASN GLY LYS SER TYR GLN GLY SEQRES 23 A 546 VAL ALA LEU THR PRO ASP TYR LEU PRO PHE ILE GLU LEU SEQRES 24 A 546 MSE ARG PHE PHE THR PRO PHE GLY ILE GLY HIS PHE ASN SEQRES 25 A 546 GLU LYS ILE GLN LEU LYS GLY LYS ASN TRP HIS ASN ASN SEQRES 26 A 546 THR PRO TYR ARG GLN ASP ILE THR GLU LEU ARG PRO GLN SEQRES 27 A 546 LEU SER GLY LYS GLU ILE LEU ILE GLY ALA PHE ILE GLY SEQRES 28 A 546 ASN TYR ASP LYS GLY GLY HIS GLN ILE SER LEU GLU LEU SEQRES 29 A 546 SER ILE HIS PRO ASP GLN GLN LYS ILE VAL ASN ASN ASN SEQRES 30 A 546 PHE VAL LEU PRO VAL PHE ASN THR THR ASN VAL MSE GLU SEQRES 31 A 546 MSE ALA GLY GLN ASP TYR PRO THR MSE PHE ASN SER ASP SEQRES 32 A 546 LYS GLY VAL GLU VAL ASP PHE ILE LEU THR LYS ASP LEU SEQRES 33 A 546 LYS ASN ALA GLN LEU ARG TYR ILE THR THR GLY HIS GLY SEQRES 34 A 546 GLY TRP GLY ALA GLY ASP GLU PHE VAL PRO LYS GLU ASN SEQRES 35 A 546 SER ILE TYR LEU ASP GLY LYS LEU ALA HIS ALA PHE THR SEQRES 36 A 546 PRO TRP ARG THR ASP CYS GLY SER TYR ARG LEU PHE ASN SEQRES 37 A 546 PRO ALA SER GLY ASN PHE GLU ASP GLY LEU SER SER SER SEQRES 38 A 546 ASP LEU SER ARG SER ASN TRP CYS PRO GLY THR ILE THR SEQRES 39 A 546 ASN PRO VAL TYR ILE ASN LEU GLY ASN LEU ASN ALA GLY SEQRES 40 A 546 LYS HIS THR ILE GLN VAL LYS ILE PRO GLN GLY ALA PRO SEQRES 41 A 546 GLU GLY SER SER GLN SER PHE TRP ASN VAL SER GLY VAL SEQRES 42 A 546 LEU LEU GLY GLN GLU HIS HIS HIS HIS HIS HIS HIS HIS MODRES 4R4X MSE A 179 MET SELENOMETHIONINE MODRES 4R4X MSE A 300 MET SELENOMETHIONINE MODRES 4R4X MSE A 389 MET SELENOMETHIONINE MODRES 4R4X MSE A 391 MET SELENOMETHIONINE MODRES 4R4X MSE A 399 MET SELENOMETHIONINE HET MSE A 179 13 HET MSE A 300 13 HET MSE A 389 8 HET MSE A 391 8 HET MSE A 399 8 HET ZN A1001 1 HET ZN A1002 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *411(H2 O) HELIX 1 1 GLU A 37 ASN A 41 1 5 HELIX 2 2 THR A 78 GLN A 83 1 6 HELIX 3 3 ASP A 159 ASN A 164 1 6 HELIX 4 4 ASP A 172 SER A 183 1 12 HELIX 5 5 GLY A 212 GLY A 214 5 3 HELIX 6 6 SER A 261 GLY A 269 1 9 HELIX 7 7 VAL A 270 LEU A 273 5 4 HELIX 8 8 LEU A 335 SER A 340 1 6 HELIX 9 9 MSE A 389 GLY A 393 5 5 HELIX 10 10 THR A 398 SER A 402 5 5 HELIX 11 11 ASP A 460 ASN A 468 5 9 HELIX 12 12 SER A 479 LEU A 483 5 5 SHEET 1 A 7 LYS A 15 ILE A 16 0 SHEET 2 A 7 THR A 3 PHE A 12 -1 N PHE A 12 O LYS A 15 SHEET 3 A 7 SER A 144 ILE A 154 -1 O LYS A 152 N GLU A 5 SHEET 4 A 7 LEU A 134 ARG A 140 -1 N ARG A 140 O SER A 144 SHEET 5 A 7 ASN A 109 THR A 116 -1 N GLU A 112 O VAL A 139 SHEET 6 A 7 TYR A 97 VAL A 106 -1 N ALA A 102 O VAL A 113 SHEET 7 A 7 LYS A 86 ILE A 94 -1 N LYS A 86 O VAL A 103 SHEET 1 B 8 LYS A 15 ILE A 16 0 SHEET 2 B 8 THR A 3 PHE A 12 -1 N PHE A 12 O LYS A 15 SHEET 3 B 8 ILE A 23 THR A 27 -1 O SER A 25 N ILE A 6 SHEET 4 B 8 LYS A 31 ASN A 36 -1 O LEU A 33 N ILE A 26 SHEET 5 B 8 PHE A 48 ASN A 54 -1 O ASN A 51 N LEU A 34 SHEET 6 B 8 GLU A 59 PHE A 65 -1 O SER A 61 N GLU A 52 SHEET 7 B 8 GLU A 70 ASP A 76 -1 O VAL A 72 N ALA A 64 SHEET 8 B 8 ASN A 167 GLU A 170 1 O ASN A 167 N ILE A 71 SHEET 1 C 4 ILE A 186 ILE A 196 0 SHEET 2 C 4 HIS A 358 HIS A 367 -1 O LEU A 364 N ILE A 188 SHEET 3 C 4 THR A 231 SER A 240 -1 N THR A 231 O HIS A 367 SHEET 4 C 4 THR A 326 ASP A 331 -1 O TYR A 328 N LEU A 236 SHEET 1 D 6 GLN A 209 PHE A 211 0 SHEET 2 D 6 ILE A 216 LYS A 222 -1 O LEU A 218 N GLN A 209 SHEET 3 D 6 GLU A 343 ILE A 350 -1 O ILE A 344 N VAL A 221 SHEET 4 D 6 THR A 248 ILE A 253 -1 N PHE A 252 O GLY A 347 SHEET 5 D 6 ILE A 297 PHE A 303 -1 O PHE A 302 N GLY A 249 SHEET 6 D 6 ILE A 493 THR A 494 -1 O THR A 494 N ARG A 301 SHEET 1 E 2 VAL A 275 TYR A 276 0 SHEET 2 E 2 TYR A 284 GLN A 285 -1 O TYR A 284 N TYR A 276 SHEET 1 F 4 PHE A 378 ASN A 384 0 SHEET 2 F 4 PHE A 527 GLN A 537 -1 O LEU A 534 N LEU A 380 SHEET 3 F 4 LEU A 416 HIS A 428 -1 N ARG A 422 O VAL A 533 SHEET 4 F 4 VAL A 497 LEU A 504 -1 O LEU A 504 N LEU A 416 SHEET 1 G 4 VAL A 406 LEU A 412 0 SHEET 2 G 4 GLY A 507 LYS A 514 -1 O GLY A 507 N LEU A 412 SHEET 3 G 4 ASN A 442 LEU A 446 -1 N TYR A 445 O GLN A 512 SHEET 4 G 4 LYS A 449 PHE A 454 -1 O PHE A 454 N ASN A 442 SSBOND 1 CYS A 461 CYS A 489 1555 1555 2.07 LINK C ASP A 178 N MSE A 179 1555 1555 1.33 LINK C MSE A 179 N ILE A 180 1555 1555 1.33 LINK C LEU A 299 N MSE A 300 1555 1555 1.33 LINK C MSE A 300 N ARG A 301 1555 1555 1.34 LINK C VAL A 388 N MSE A 389 1555 1555 1.34 LINK C MSE A 389 N GLU A 390 1555 1555 1.33 LINK C GLU A 390 N MSE A 391 1555 1555 1.31 LINK C MSE A 391 N ALA A 392 1555 1555 1.33 LINK C THR A 398 N MSE A 399 1555 1555 1.33 LINK C MSE A 399 N PHE A 400 1555 1555 1.32 LINK OE1 GLU A 52 ZN ZN A1001 1555 1555 2.25 LINK OE2 GLU A 52 ZN ZN A1001 1555 1555 2.52 LINK OD2 ASP A 159 ZN ZN A1001 1555 1555 2.09 LINK NE2 HIS A 542 ZN ZN A1002 1555 1555 2.11 LINK NE2 HIS A 545 ZN ZN A1002 1555 1555 2.13 CISPEP 1 PHE A 46 PRO A 47 0 -4.31 SITE 1 AC1 4 GLU A 52 ASP A 159 HIS A 544 HIS A 546 SITE 1 AC2 2 HIS A 542 HIS A 545 CRYST1 161.400 55.400 71.200 90.00 102.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006194 0.000000 0.001343 0.00000 SCALE2 0.000000 0.018040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014374 0.00000