HEADER DE NOVO PROTEIN 21-AUG-14 4R5D TITLE CRYSTAL STRUCTURE OF COMPUTATIONAL DESIGNED LEUCINE RICH REPEATS TITLE 2 DLRR_G3 IN SPACE GROUP F222 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE RICH REPEAT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEUCINE RICH REPEAT (LRR) PROTEIN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.W.SHEN,B.L.STODDARD REVDAT 5 28-FEB-24 4R5D 1 REMARK REVDAT 4 18-FEB-15 4R5D 1 JRNL REVDAT 3 28-JAN-15 4R5D 1 JRNL REVDAT 2 14-JAN-15 4R5D 1 JRNL REVDAT 1 07-JAN-15 4R5D 0 JRNL AUTH K.PARK,B.W.SHEN,F.PARMEGGIANI,P.S.HUANG,B.L.STODDARD,D.BAKER JRNL TITL CONTROL OF REPEAT-PROTEIN CURVATURE BY COMPUTATIONAL PROTEIN JRNL TITL 2 DESIGN. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 167 2015 JRNL REFN ISSN 1545-9993 JRNL PMID 25580576 JRNL DOI 10.1038/NSMB.2938 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 15856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : 0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.715 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.303 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.819 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3525 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3416 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4812 ; 1.629 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7854 ; 0.859 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 5.959 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;44.823 ;26.829 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;17.367 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.730 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 597 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4122 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 766 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1813 ; 0.687 ; 1.119 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1812 ; 0.681 ; 1.116 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2282 ; 1.198 ; 1.670 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2283 ; 1.198 ; 1.673 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1710 ; 1.037 ; 1.271 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1710 ; 1.035 ; 1.270 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2531 ; 1.641 ; 1.865 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3833 ; 3.708 ; 8.875 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3814 ; 3.669 ; 8.810 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): 102.8243 170.8948 18.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.0643 REMARK 3 T33: 0.0352 T12: 0.0436 REMARK 3 T13: -0.0311 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.6582 L22: 3.2024 REMARK 3 L33: 0.7569 L12: 0.0489 REMARK 3 L13: -0.1340 L23: 0.4812 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: 0.1481 S13: -0.0411 REMARK 3 S21: -0.2166 S22: -0.0484 S23: 0.0377 REMARK 3 S31: 0.0495 S32: -0.0069 S33: -0.0202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4R5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 70 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17061 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 0.1530 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.15300 REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER MR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1 M BIS-TRIS, REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.19200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.87650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.19200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.87650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.19200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.87650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.19200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.87650 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.56700 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.87650 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.56700 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 80.87650 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 45.56700 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.87650 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 45.56700 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.87650 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 45.56700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.19200 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 45.56700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 68.19200 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 45.56700 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 68.19200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 45.56700 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 68.19200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 501 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 655 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 414 OE1 GLU A 414 3855 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 202 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 41.32 -145.55 REMARK 500 ASN A 72 -161.22 -106.86 REMARK 500 ASN A 94 -153.16 -122.38 REMARK 500 ASN A 118 -155.48 -109.30 REMARK 500 GLN A 125 119.88 -39.47 REMARK 500 ASN A 142 -164.35 -121.36 REMARK 500 LEU A 155 60.00 -94.12 REMARK 500 ASN A 166 -162.58 -127.73 REMARK 500 ASN A 166 -162.02 -127.73 REMARK 500 ASN A 190 -164.59 -118.96 REMARK 500 ASN A 190 -163.34 -118.96 REMARK 500 THR A 217 -72.24 -114.76 REMARK 500 ASN A 238 -162.27 -126.15 REMARK 500 ASN A 265 74.69 56.12 REMARK 500 ASN A 265 74.69 58.48 REMARK 500 SER A 321 155.53 -46.16 REMARK 500 PRO A 340 113.22 -39.76 REMARK 500 ARG A 421 -74.86 -55.02 REMARK 500 LEU A 432 117.24 -161.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R58 RELATED DB: PDB REMARK 900 RELATED ID: 4R5C RELATED DB: PDB REMARK 900 RELATED ID: 4R6F RELATED DB: PDB REMARK 900 RELATED ID: 4R6G RELATED DB: PDB REMARK 900 RELATED ID: 4R6J RELATED DB: PDB DBREF 4R5D A 0 440 PDB 4R5D 4R5D 0 440 SEQRES 1 A 441 ALA THR ILE THR VAL SER THR PRO ILE LYS GLN ILE PHE SEQRES 2 A 441 PRO ASP ASP ALA PHE ALA GLU THR ILE LYS ALA ASN LEU SEQRES 3 A 441 LYS LYS LYS SER VAL THR ASP ALA VAL THR GLN ASN GLU SEQRES 4 A 441 LEU ASN SER ILE ASP GLN ILE ILE ALA ASN ASN SER ASP SEQRES 5 A 441 ILE LYS SER VAL GLN GLY ILE GLN TYR LEU PRO ASN VAL SEQRES 6 A 441 ARG TYR LEU ALA LEU GLY GLY ASN LYS LEU HIS ASP ILE SEQRES 7 A 441 SER ALA LEU LYS GLU LEU THR ASN LEU GLY TRP LEU ASN SEQRES 8 A 441 LEU SER ASN ASN GLN LEU GLU THR LEU PRO GLN GLY VAL SEQRES 9 A 441 PHE GLU LYS LEU THR ASN LEU THR THR LEU ASN LEU SER SEQRES 10 A 441 ASN ASN GLN LEU THR SER LEU PRO GLN GLY VAL PHE GLU SEQRES 11 A 441 ARG LEU ALA SER LEU THR THR LEU ASN LEU SER ASN ASN SEQRES 12 A 441 GLN LEU THR SER LEU PRO GLN GLY VAL PHE GLU ARG LEU SEQRES 13 A 441 THR ASN LEU THR THR LEU ASN LEU SER ASN ASN GLN LEU SEQRES 14 A 441 THR SER LEU PRO GLN GLY VAL PHE GLU ARG LEU THR ASN SEQRES 15 A 441 LEU THR THR LEU ASN LEU SER ASN ASN GLN LEU THR SER SEQRES 16 A 441 LEU PRO GLN GLY VAL PHE GLU ARG LEU THR SER LEU THR SEQRES 17 A 441 THR LEU ASN LEU SER ASN ASN GLN LEU THR SER LEU PRO SEQRES 18 A 441 ASP GLY VAL PHE GLU ARG LEU THR ASN LEU LYS THR LEU SEQRES 19 A 441 ASN LEU SER ASN ASN GLN LEU THR LYS GLU ALA CYS ARG SEQRES 20 A 441 ALA VAL ALA ASN ALA LEU LYS GLN ALA ALA SER LEU HIS SEQRES 21 A 441 GLU LEU HIS LEU SER ASN ASN ASN ILE GLY GLU GLU GLY SEQRES 22 A 441 ALA ALA GLU LEU VAL GLU ALA LEU LEU HIS PRO GLY SER SEQRES 23 A 441 THR LEU GLU THR LEU ASP LEU SER ASN CYS ASN LEU THR SEQRES 24 A 441 LYS GLU ALA CYS ARG GLU ILE ALA ARG ALA LEU LYS GLN SEQRES 25 A 441 ALA THR THR LEU HIS GLU LEU HIS LEU SER ASN ASN ASN SEQRES 26 A 441 ILE GLY GLU GLU GLY ALA ALA GLU LEU VAL GLU ALA LEU SEQRES 27 A 441 LEU HIS PRO GLY SER THR LEU GLU THR LEU ASP LEU SER SEQRES 28 A 441 ASN CYS ASN LEU THR LYS GLU ALA CYS ARG GLU ILE ALA SEQRES 29 A 441 ARG ALA LEU LYS GLN ALA THR THR LEU HIS GLU LEU HIS SEQRES 30 A 441 LEU SER ASN ASN ASN ILE GLY GLU GLU GLY ALA ALA GLU SEQRES 31 A 441 LEU VAL GLU ALA LEU LEU HIS PRO GLY SER THR LEU GLU SEQRES 32 A 441 THR LEU ASP LEU SER ASN CYS ASN LEU THR LYS GLU ALA SEQRES 33 A 441 CYS ARG GLU ILE ALA ARG ALA LEU LYS GLN ALA THR SER SEQRES 34 A 441 LEU HIS GLU LEU HIS LEU SER ASN ASN ASN ILE GLY HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET EDO A 506 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *91(H2 O) HELIX 1 1 ILE A 8 PHE A 12 1 5 HELIX 2 2 ASP A 14 LYS A 26 1 13 HELIX 3 3 THR A 35 SER A 41 1 7 HELIX 4 4 GLY A 57 LEU A 61 5 5 HELIX 5 5 ILE A 77 LYS A 81 5 5 HELIX 6 6 ALA A 244 ALA A 255 1 12 HELIX 7 7 ILE A 268 LEU A 281 1 14 HELIX 8 8 THR A 298 ALA A 312 1 15 HELIX 9 9 ILE A 325 LEU A 338 1 14 HELIX 10 10 THR A 355 LYS A 367 1 13 HELIX 11 11 GLY A 383 LEU A 395 1 13 HELIX 12 12 THR A 412 LYS A 424 1 13 SHEET 1 A 2 THR A 6 PRO A 7 0 SHEET 2 A 2 ALA A 33 VAL A 34 -1 O VAL A 34 N THR A 6 SHEET 1 B16 GLN A 44 ILE A 46 0 SHEET 2 B16 TYR A 66 ALA A 68 1 O ALA A 68 N ILE A 45 SHEET 3 B16 TRP A 88 ASN A 90 1 O ASN A 90 N LEU A 67 SHEET 4 B16 THR A 112 ASN A 114 1 O ASN A 114 N LEU A 89 SHEET 5 B16 THR A 136 ASN A 138 1 O ASN A 138 N LEU A 113 SHEET 6 B16 THR A 160 ASN A 162 1 O ASN A 162 N LEU A 137 SHEET 7 B16 THR A 184 ASN A 186 1 O ASN A 186 N LEU A 161 SHEET 8 B16 THR A 208 ASN A 210 1 O THR A 208 N LEU A 185 SHEET 9 B16 THR A 232 ASN A 234 1 O THR A 232 N LEU A 209 SHEET 10 B16 GLU A 260 HIS A 262 1 O HIS A 262 N LEU A 233 SHEET 11 B16 THR A 289 ASP A 291 1 O THR A 289 N LEU A 261 SHEET 12 B16 GLU A 317 HIS A 319 1 O GLU A 317 N LEU A 290 SHEET 13 B16 THR A 346 ASP A 348 1 O THR A 346 N LEU A 318 SHEET 14 B16 GLU A 374 HIS A 376 1 O GLU A 374 N LEU A 347 SHEET 15 B16 THR A 403 ASP A 405 1 O ASP A 405 N LEU A 375 SHEET 16 B16 GLU A 431 HIS A 433 1 O HIS A 433 N LEU A 404 SITE 1 AC1 6 GLN A 149 PRO A 172 GLN A 173 HOH A 637 SITE 2 AC1 6 HOH A 655 HOH A 659 SITE 1 AC2 4 GLU A 19 LYS A 22 SER A 29 VAL A 30 SITE 1 AC3 5 ASN A 48 TYR A 66 ALA A 68 TRP A 88 SITE 2 AC3 5 ASN A 90 SITE 1 AC4 2 ARG A 154 ARG A 178 SITE 1 AC5 4 LEU A 432 HIS A 433 LEU A 434 SER A 435 SITE 1 AC6 6 ASN A 48 ASN A 49 GLY A 70 ASN A 90 SITE 2 AC6 6 ASN A 322 ASN A 351 CRYST1 91.134 136.384 161.753 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010973 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006182 0.00000