HEADER OXIDOREDUCTASE 21-AUG-14 4R5M TITLE CRYSTAL STRUCTURE OF VC-ASPARTATE BETA-SEMIALDEHYDE-DEHYDROGENASE WITH TITLE 2 NADP AND 4-NITRO-2-PHOSPHONO-BENZOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE-SEMIALDEHYDE DEHYDROGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASA DEHYDROGENASE 1, ASADH 1, ASPARTATE-BETA-SEMIALDEHYDE COMPND 5 DEHYDROGENASE 1; COMPND 6 EC: 1.2.1.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: ATCC 39315; SOURCE 5 GENE: ASD1, Q9KQG2, VC_2036; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE, NADP, CYPOPLASM EXPDTA X-RAY DIFFRACTION AUTHOR A.G.PAVLOVSKY,B.THANGAVELU,P.BHANSALI,R.E.VIOLA REVDAT 3 20-SEP-23 4R5M 1 REMARK SEQADV LINK REVDAT 2 31-DEC-14 4R5M 1 JRNL REVDAT 1 10-DEC-14 4R5M 0 JRNL AUTH A.G.PAVLOVSKY,B.THANGAVELU,P.BHANSALI,R.E.VIOLA JRNL TITL A CAUTIONARY TALE OF STRUCTURE-GUIDED INHIBITOR DEVELOPMENT JRNL TITL 2 AGAINST AN ESSENTIAL ENZYME IN THE ASPARTATE-BIOSYNTHETIC JRNL TITL 3 PATHWAY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 3244 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25478842 JRNL DOI 10.1107/S1399004714023979 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 67739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3610 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4850 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 267 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 601 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.57000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : 1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.776 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5949 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5715 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8094 ; 1.250 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13164 ; 0.757 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 754 ; 5.680 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;35.900 ;24.398 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1029 ;11.273 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.375 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 915 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6675 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1299 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2974 ; 1.267 ; 2.951 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2973 ; 1.264 ; 2.950 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3721 ; 1.983 ; 4.417 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3722 ; 1.983 ; 4.418 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2975 ; 1.688 ; 3.255 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2974 ; 1.694 ; 3.256 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4366 ; 2.748 ; 4.795 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7156 ; 5.291 ;24.982 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6850 ; 4.916 ;24.371 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4R5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000086928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR AND REMARK 200 K-B PAIR OF BIOMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71382 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38600 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3Q0E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20% PEG 3350, 0.1 M NA-CITRATE (PH REMARK 280 6.5), 0.1 M NA-ACETATE, 10 MM DTT, 3% ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.41850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.67650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.67650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.62775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.67650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.67650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.20925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.67650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.67650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 114.62775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.67650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.67650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.20925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.41850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 LYS B 370 REMARK 465 HIS B 371 REMARK 465 HIS B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 510 O HOH A 729 1.22 REMARK 500 O HOH A 561 O HOH A 842 1.42 REMARK 500 O HOH A 542 O HOH A 731 1.62 REMARK 500 O HOH B 502 O HOH B 731 1.65 REMARK 500 O HOH B 509 O HOH B 736 1.70 REMARK 500 O HOH A 779 O HOH B 503 1.78 REMARK 500 O HOH A 811 O HOH A 851 1.81 REMARK 500 O HOH A 577 O HOH A 854 1.83 REMARK 500 O HOH B 615 O HOH B 730 1.85 REMARK 500 O HOH A 659 O HOH A 734 1.95 REMARK 500 O HOH A 580 O HOH A 854 1.97 REMARK 500 SG CYS B 134 O HOH B 728 1.98 REMARK 500 O HOH B 537 O HOH B 735 2.00 REMARK 500 O HOH A 765 O HOH A 842 2.02 REMARK 500 O HOH A 579 O HOH A 811 2.06 REMARK 500 O CYS A 265 O HOH A 729 2.06 REMARK 500 OG1 THR B 322 O HOH B 503 2.12 REMARK 500 O HOH A 574 O HOH A 776 2.12 REMARK 500 O HOH A 605 O HOH A 779 2.13 REMARK 500 O HOH B 629 O HOH B 724 2.18 REMARK 500 O HOH B 532 O HOH B 666 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 699 O HOH B 656 4665 1.65 REMARK 500 O HOH A 626 O HOH B 656 4665 1.88 REMARK 500 O HOH B 597 O HOH B 738 6544 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 -30.72 -131.24 REMARK 500 LEU A 110 78.89 -151.04 REMARK 500 SER A 224 -157.93 -148.91 REMARK 500 PRO A 227 45.13 -83.97 REMARK 500 ASP A 230 -176.68 72.69 REMARK 500 SER A 257 66.66 -150.67 REMARK 500 ARG A 272 18.13 -147.21 REMARK 500 LEU A 316 57.19 -106.93 REMARK 500 LEU A 352 -93.54 -90.88 REMARK 500 ALA A 355 -71.29 -152.66 REMARK 500 PRO B 227 46.04 -84.01 REMARK 500 ASP B 230 -179.30 74.24 REMARK 500 SER B 257 72.35 -154.27 REMARK 500 ARG B 272 15.68 -145.63 REMARK 500 LEU B 316 58.74 -106.67 REMARK 500 LEU B 352 -89.54 -92.65 REMARK 500 ALA B 355 -72.07 -153.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 210 O REMARK 620 2 PHE A 212 O 92.9 REMARK 620 3 THR A 214 OG1 171.7 94.9 REMARK 620 4 HOH A 533 O 100.5 77.4 83.9 REMARK 620 5 HOH A 640 O 86.9 97.7 89.4 171.3 REMARK 620 6 HOH A 698 O 88.6 165.9 84.4 88.5 96.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4NO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4NO B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R3W RELATED DB: PDB REMARK 900 RELATED ID: 4R41 RELATED DB: PDB REMARK 900 RELATED ID: 4R4J RELATED DB: PDB REMARK 900 RELATED ID: 4R51 RELATED DB: PDB REMARK 900 RELATED ID: 4R54 RELATED DB: PDB REMARK 900 RELATED ID: 4R5H RELATED DB: PDB REMARK 900 RELATED ID: 4R3N RELATED DB: PDB DBREF 4R5M A 1 370 UNP Q9KQG2 DHAS1_VIBCH 1 370 DBREF 4R5M B 1 370 UNP Q9KQG2 DHAS1_VIBCH 1 370 SEQADV 4R5M HIS A 371 UNP Q9KQG2 EXPRESSION TAG SEQADV 4R5M HIS A 372 UNP Q9KQG2 EXPRESSION TAG SEQADV 4R5M HIS A 373 UNP Q9KQG2 EXPRESSION TAG SEQADV 4R5M HIS A 374 UNP Q9KQG2 EXPRESSION TAG SEQADV 4R5M HIS A 375 UNP Q9KQG2 EXPRESSION TAG SEQADV 4R5M HIS A 376 UNP Q9KQG2 EXPRESSION TAG SEQADV 4R5M HIS B 371 UNP Q9KQG2 EXPRESSION TAG SEQADV 4R5M HIS B 372 UNP Q9KQG2 EXPRESSION TAG SEQADV 4R5M HIS B 373 UNP Q9KQG2 EXPRESSION TAG SEQADV 4R5M HIS B 374 UNP Q9KQG2 EXPRESSION TAG SEQADV 4R5M HIS B 375 UNP Q9KQG2 EXPRESSION TAG SEQADV 4R5M HIS B 376 UNP Q9KQG2 EXPRESSION TAG SEQRES 1 A 376 MET ARG VAL GLY LEU VAL GLY TRP ARG GLY MET VAL GLY SEQRES 2 A 376 SER VAL LEU MET GLN ARG MET VAL GLU GLU ARG ASP PHE SEQRES 3 A 376 ASP LEU ILE GLU PRO VAL PHE PHE SER THR SER GLN ILE SEQRES 4 A 376 GLY VAL PRO ALA PRO ASN PHE GLY LYS ASP ALA GLY MET SEQRES 5 A 376 LEU HIS ASP ALA PHE ASP ILE GLU SER LEU LYS GLN LEU SEQRES 6 A 376 ASP ALA VAL ILE THR CYS GLN GLY GLY SER TYR THR GLU SEQRES 7 A 376 LYS VAL TYR PRO ALA LEU ARG GLN ALA GLY TRP LYS GLY SEQRES 8 A 376 TYR TRP ILE ASP ALA ALA SER THR LEU ARG MET ASP LYS SEQRES 9 A 376 GLU ALA ILE ILE THR LEU ASP PRO VAL ASN LEU LYS GLN SEQRES 10 A 376 ILE LEU HIS GLY ILE HIS HIS GLY THR LYS THR PHE VAL SEQRES 11 A 376 GLY GLY ASN CYS THR VAL SER LEU MET LEU MET ALA LEU SEQRES 12 A 376 GLY GLY LEU TYR GLU ARG GLY LEU VAL GLU TRP MET SER SEQRES 13 A 376 ALA MET THR TYR GLN ALA ALA SER GLY ALA GLY ALA GLN SEQRES 14 A 376 ASN MET ARG GLU LEU ILE SER GLN MET GLY VAL ILE ASN SEQRES 15 A 376 ASP ALA VAL SER SER GLU LEU ALA ASN PRO ALA SER SER SEQRES 16 A 376 ILE LEU ASP ILE ASP LYS LYS VAL ALA GLU THR MET ARG SEQRES 17 A 376 SER GLY SER PHE PRO THR ASP ASN PHE GLY VAL PRO LEU SEQRES 18 A 376 ALA GLY SER LEU ILE PRO TRP ILE ASP VAL LYS ARG ASP SEQRES 19 A 376 ASN GLY GLN SER LYS GLU GLU TRP LYS ALA GLY VAL GLU SEQRES 20 A 376 ALA ASN LYS ILE LEU GLY LEU GLN ASP SER PRO VAL PRO SEQRES 21 A 376 ILE ASP GLY THR CYS VAL ARG ILE GLY ALA MET ARG CYS SEQRES 22 A 376 HIS SER GLN ALA LEU THR ILE LYS LEU LYS GLN ASN ILE SEQRES 23 A 376 PRO LEU ASP GLU ILE GLU GLU MET ILE ALA THR HIS ASN SEQRES 24 A 376 ASP TRP VAL LYS VAL ILE PRO ASN GLU ARG ASP ILE THR SEQRES 25 A 376 ALA ARG GLU LEU THR PRO ALA LYS VAL THR GLY THR LEU SEQRES 26 A 376 SER VAL PRO VAL GLY ARG LEU ARG LYS MET ALA MET GLY SEQRES 27 A 376 ASP ASP PHE LEU ASN ALA PHE THR VAL GLY ASP GLN LEU SEQRES 28 A 376 LEU TRP GLY ALA ALA GLU PRO LEU ARG ARG THR LEU ARG SEQRES 29 A 376 ILE ILE LEU ALA GLU LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 376 MET ARG VAL GLY LEU VAL GLY TRP ARG GLY MET VAL GLY SEQRES 2 B 376 SER VAL LEU MET GLN ARG MET VAL GLU GLU ARG ASP PHE SEQRES 3 B 376 ASP LEU ILE GLU PRO VAL PHE PHE SER THR SER GLN ILE SEQRES 4 B 376 GLY VAL PRO ALA PRO ASN PHE GLY LYS ASP ALA GLY MET SEQRES 5 B 376 LEU HIS ASP ALA PHE ASP ILE GLU SER LEU LYS GLN LEU SEQRES 6 B 376 ASP ALA VAL ILE THR CYS GLN GLY GLY SER TYR THR GLU SEQRES 7 B 376 LYS VAL TYR PRO ALA LEU ARG GLN ALA GLY TRP LYS GLY SEQRES 8 B 376 TYR TRP ILE ASP ALA ALA SER THR LEU ARG MET ASP LYS SEQRES 9 B 376 GLU ALA ILE ILE THR LEU ASP PRO VAL ASN LEU LYS GLN SEQRES 10 B 376 ILE LEU HIS GLY ILE HIS HIS GLY THR LYS THR PHE VAL SEQRES 11 B 376 GLY GLY ASN CYS THR VAL SER LEU MET LEU MET ALA LEU SEQRES 12 B 376 GLY GLY LEU TYR GLU ARG GLY LEU VAL GLU TRP MET SER SEQRES 13 B 376 ALA MET THR TYR GLN ALA ALA SER GLY ALA GLY ALA GLN SEQRES 14 B 376 ASN MET ARG GLU LEU ILE SER GLN MET GLY VAL ILE ASN SEQRES 15 B 376 ASP ALA VAL SER SER GLU LEU ALA ASN PRO ALA SER SER SEQRES 16 B 376 ILE LEU ASP ILE ASP LYS LYS VAL ALA GLU THR MET ARG SEQRES 17 B 376 SER GLY SER PHE PRO THR ASP ASN PHE GLY VAL PRO LEU SEQRES 18 B 376 ALA GLY SER LEU ILE PRO TRP ILE ASP VAL LYS ARG ASP SEQRES 19 B 376 ASN GLY GLN SER LYS GLU GLU TRP LYS ALA GLY VAL GLU SEQRES 20 B 376 ALA ASN LYS ILE LEU GLY LEU GLN ASP SER PRO VAL PRO SEQRES 21 B 376 ILE ASP GLY THR CYS VAL ARG ILE GLY ALA MET ARG CYS SEQRES 22 B 376 HIS SER GLN ALA LEU THR ILE LYS LEU LYS GLN ASN ILE SEQRES 23 B 376 PRO LEU ASP GLU ILE GLU GLU MET ILE ALA THR HIS ASN SEQRES 24 B 376 ASP TRP VAL LYS VAL ILE PRO ASN GLU ARG ASP ILE THR SEQRES 25 B 376 ALA ARG GLU LEU THR PRO ALA LYS VAL THR GLY THR LEU SEQRES 26 B 376 SER VAL PRO VAL GLY ARG LEU ARG LYS MET ALA MET GLY SEQRES 27 B 376 ASP ASP PHE LEU ASN ALA PHE THR VAL GLY ASP GLN LEU SEQRES 28 B 376 LEU TRP GLY ALA ALA GLU PRO LEU ARG ARG THR LEU ARG SEQRES 29 B 376 ILE ILE LEU ALA GLU LYS HIS HIS HIS HIS HIS HIS HET NA A 401 1 HET NAP A 402 48 HET 4NO A 403 16 HET NAP B 401 48 HET 4NO B 402 16 HETNAM NA SODIUM ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM 4NO 4-NITRO-2-PHOSPHONOBENZOIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NA NA 1+ FORMUL 4 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 4NO 2(C7 H6 N O7 P) FORMUL 8 HOH *601(H2 O) HELIX 1 1 GLY A 10 GLU A 23 1 14 HELIX 2 2 ARG A 24 ILE A 29 5 6 HELIX 3 3 ASP A 58 GLN A 64 1 7 HELIX 4 4 GLY A 73 ALA A 87 1 15 HELIX 5 5 LEU A 110 HIS A 124 1 15 HELIX 6 6 ASN A 133 GLU A 148 1 16 HELIX 7 7 ALA A 162 ALA A 166 5 5 HELIX 8 8 GLY A 167 ALA A 190 1 24 HELIX 9 9 SER A 195 SER A 209 1 15 HELIX 10 10 SER A 238 GLY A 253 1 16 HELIX 11 11 PRO A 287 THR A 297 1 11 HELIX 12 12 GLU A 308 LEU A 316 1 9 HELIX 13 13 THR A 317 THR A 322 1 6 HELIX 14 14 ALA A 356 GLU A 369 1 14 HELIX 15 15 GLY B 10 GLU B 23 1 14 HELIX 16 16 ARG B 24 ILE B 29 5 6 HELIX 17 17 ASP B 58 LYS B 63 1 6 HELIX 18 18 GLY B 73 ALA B 87 1 15 HELIX 19 19 LEU B 110 HIS B 124 1 15 HELIX 20 20 ASN B 133 ARG B 149 1 17 HELIX 21 21 ALA B 162 ALA B 166 5 5 HELIX 22 22 GLY B 167 ASN B 191 1 25 HELIX 23 23 SER B 195 SER B 209 1 15 HELIX 24 24 SER B 238 LEU B 252 1 15 HELIX 25 25 PRO B 287 THR B 297 1 11 HELIX 26 26 GLU B 308 LEU B 316 1 9 HELIX 27 27 THR B 317 THR B 322 1 6 HELIX 28 28 ALA B 355 GLU B 369 1 15 SHEET 1 A 7 HIS A 54 ASP A 55 0 SHEET 2 A 7 GLU A 30 SER A 35 1 N SER A 35 O HIS A 54 SHEET 3 A 7 ARG A 2 VAL A 6 1 N LEU A 5 O VAL A 32 SHEET 4 A 7 ALA A 67 THR A 70 1 O ILE A 69 N GLY A 4 SHEET 5 A 7 TYR A 92 ASP A 95 1 O ILE A 94 N VAL A 68 SHEET 6 A 7 THR A 128 GLY A 131 1 O PHE A 129 N TRP A 93 SHEET 7 A 7 ALA A 106 THR A 109 1 N ILE A 107 O VAL A 130 SHEET 1 B 6 ILE A 261 ASP A 262 0 SHEET 2 B 6 VAL A 152 TYR A 160 1 N ALA A 157 O ASP A 262 SHEET 3 B 6 CYS A 273 LEU A 282 -1 O LYS A 281 N GLU A 153 SHEET 4 B 6 GLY A 338 ASP A 349 -1 O LEU A 342 N ILE A 280 SHEET 5 B 6 VAL A 327 MET A 335 -1 N GLY A 330 O PHE A 345 SHEET 6 B 6 VAL A 302 VAL A 304 1 N LYS A 303 O VAL A 329 SHEET 1 C 7 HIS B 54 ASP B 55 0 SHEET 2 C 7 GLU B 30 SER B 35 1 N PHE B 33 O HIS B 54 SHEET 3 C 7 ARG B 2 VAL B 6 1 N LEU B 5 O PHE B 34 SHEET 4 C 7 ALA B 67 THR B 70 1 O ALA B 67 N GLY B 4 SHEET 5 C 7 TYR B 92 ASP B 95 1 O ILE B 94 N VAL B 68 SHEET 6 C 7 THR B 128 GLY B 131 1 O GLY B 131 N ASP B 95 SHEET 7 C 7 ALA B 106 THR B 109 1 N ILE B 107 O VAL B 130 SHEET 1 D 6 ILE B 261 THR B 264 0 SHEET 2 D 6 VAL B 152 TYR B 160 1 N ALA B 157 O ASP B 262 SHEET 3 D 6 CYS B 273 LEU B 282 -1 O LYS B 281 N GLU B 153 SHEET 4 D 6 GLY B 338 ASP B 349 -1 O ALA B 344 N LEU B 278 SHEET 5 D 6 VAL B 327 MET B 335 -1 N GLY B 330 O PHE B 345 SHEET 6 D 6 VAL B 302 VAL B 304 1 N LYS B 303 O VAL B 329 LINK O GLY A 210 NA NA A 401 1555 1555 2.53 LINK O PHE A 212 NA NA A 401 1555 1555 2.34 LINK OG1 THR A 214 NA NA A 401 1555 1555 2.57 LINK NA NA A 401 O HOH A 533 1555 1555 2.60 LINK NA NA A 401 O HOH A 640 1555 1555 2.43 LINK NA NA A 401 O HOH A 698 1555 1555 2.38 SITE 1 AC1 6 GLY A 210 PHE A 212 THR A 214 HOH A 533 SITE 2 AC1 6 HOH A 640 HOH A 698 SITE 1 AC2 24 GLY A 7 ARG A 9 GLY A 10 MET A 11 SITE 2 AC2 24 VAL A 12 THR A 36 SER A 37 CYS A 71 SITE 3 AC2 24 GLN A 72 GLY A 73 SER A 164 GLY A 165 SITE 4 AC2 24 GLN A 350 4NO A 403 HOH A 504 HOH A 569 SITE 5 AC2 24 HOH A 571 HOH A 625 HOH A 646 HOH A 651 SITE 6 AC2 24 HOH A 687 HOH A 777 HOH A 806 HOH A 844 SITE 1 AC3 11 CYS A 71 GLY A 73 GLY A 74 ALA A 96 SITE 2 AC3 11 ALA A 97 SER A 98 ARG A 101 ASN A 133 SITE 3 AC3 11 LYS A 243 NAP A 402 HOH A 747 SITE 1 AC4 17 PRO A 192 HOH A 796 GLY B 7 ARG B 9 SITE 2 AC4 17 GLY B 10 MET B 11 VAL B 12 THR B 36 SITE 3 AC4 17 SER B 37 CYS B 71 GLN B 72 GLY B 165 SITE 4 AC4 17 4NO B 402 HOH B 584 HOH B 586 HOH B 622 SITE 5 AC4 17 HOH B 669 SITE 1 AC5 7 GLY B 74 ALA B 96 ALA B 97 SER B 98 SITE 2 AC5 7 ARG B 101 ASN B 133 NAP B 401 CRYST1 107.353 107.353 152.837 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009315 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006543 0.00000