data_4R5R # _entry.id 4R5R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4R5R RCSB RCSB086933 WWPDB D_1000086933 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4R5U _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4R5R _pdbx_database_status.recvd_initial_deposition_date 2014-08-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, C.H.' 1 'Shiu, J.H.' 2 'Chang, Y.T.' 3 'Jeng, W.Y.' 4 'Chuang, W.J.' 5 # _citation.id primary _citation.title 'Effects of the regions adjacent to the RGD motif in disintegrins on their inhibitory activities and structures' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Huang, C.H.' 1 primary 'Shiu, J.H.' 2 primary 'Chang, Y.T.' 3 primary 'Jeng, W.Y.' 4 primary 'Chuang, W.J.' 5 # _cell.entry_id 4R5R _cell.length_a 18.083 _cell.length_b 79.986 _cell.length_c 39.497 _cell.angle_alpha 90.00 _cell.angle_beta 91.30 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4R5R _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Disintegrin rhodostomin' 7485.618 2 ? 'S39K, R40K, A41K, G42R, K43T' 'disintegrin mutant, UNP residues 408-475' ? 2 water nat water 18.015 264 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RHO, RHOD, Disintegrin kistrin, Platelet aggregation activation inhibitor' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GKECDCSSPENPCCDAATCKLRPGAQCGEGLCCEQCKFKKKRTICRIPRGDMPDDRCTGQSADCPRYH _entity_poly.pdbx_seq_one_letter_code_can GKECDCSSPENPCCDAATCKLRPGAQCGEGLCCEQCKFKKKRTICRIPRGDMPDDRCTGQSADCPRYH _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LYS n 1 3 GLU n 1 4 CYS n 1 5 ASP n 1 6 CYS n 1 7 SER n 1 8 SER n 1 9 PRO n 1 10 GLU n 1 11 ASN n 1 12 PRO n 1 13 CYS n 1 14 CYS n 1 15 ASP n 1 16 ALA n 1 17 ALA n 1 18 THR n 1 19 CYS n 1 20 LYS n 1 21 LEU n 1 22 ARG n 1 23 PRO n 1 24 GLY n 1 25 ALA n 1 26 GLN n 1 27 CYS n 1 28 GLY n 1 29 GLU n 1 30 GLY n 1 31 LEU n 1 32 CYS n 1 33 CYS n 1 34 GLU n 1 35 GLN n 1 36 CYS n 1 37 LYS n 1 38 PHE n 1 39 LYS n 1 40 LYS n 1 41 LYS n 1 42 ARG n 1 43 THR n 1 44 ILE n 1 45 CYS n 1 46 ARG n 1 47 ILE n 1 48 PRO n 1 49 ARG n 1 50 GLY n 1 51 ASP n 1 52 MET n 1 53 PRO n 1 54 ASP n 1 55 ASP n 1 56 ARG n 1 57 CYS n 1 58 THR n 1 59 GLY n 1 60 GLN n 1 61 SER n 1 62 ALA n 1 63 ASP n 1 64 CYS n 1 65 PRO n 1 66 ARG n 1 67 TYR n 1 68 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Malayan pit viper' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene RHOD _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Calloselasma rhodostoma' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 8717 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPICZalphaA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VM2RH_CALRH _struct_ref.pdbx_db_accession P30403 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GKECDCSSPENPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIPRGDMPDDRCTGQSADCPRYH _struct_ref.pdbx_align_begin 408 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4R5R A 1 ? 68 ? P30403 408 ? 475 ? 1 68 2 1 4R5R B 1 ? 68 ? P30403 408 ? 475 ? 1 68 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4R5R LYS A 39 ? UNP P30403 SER 446 'ENGINEERED MUTATION' 39 1 1 4R5R LYS A 40 ? UNP P30403 ARG 447 'ENGINEERED MUTATION' 40 2 1 4R5R LYS A 41 ? UNP P30403 ALA 448 'ENGINEERED MUTATION' 41 3 1 4R5R ARG A 42 ? UNP P30403 GLY 449 'ENGINEERED MUTATION' 42 4 1 4R5R THR A 43 ? UNP P30403 LYS 450 'ENGINEERED MUTATION' 43 5 2 4R5R LYS B 39 ? UNP P30403 SER 446 'ENGINEERED MUTATION' 39 6 2 4R5R LYS B 40 ? UNP P30403 ARG 447 'ENGINEERED MUTATION' 40 7 2 4R5R LYS B 41 ? UNP P30403 ALA 448 'ENGINEERED MUTATION' 41 8 2 4R5R ARG B 42 ? UNP P30403 GLY 449 'ENGINEERED MUTATION' 42 9 2 4R5R THR B 43 ? UNP P30403 LYS 450 'ENGINEERED MUTATION' 43 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 4R5R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_percent_sol 35.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '0.2M CH3COONH4, 0.1M pH 4.6 CH3COONa, 28% PEG4000, 2% PEG300, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2013-06-06 _diffrn_detector.details 'Vertically Focusing Mirror, Horizontally Focusing Single Crystal Si(111) Bent Monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Horizontally Focusing Single Crystal Monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97622 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97622 # _reflns.entry_id 4R5R _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 0.96 _reflns.number_obs 68199 _reflns.number_all 68465 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 0.96 _reflns_shell.d_res_low 0.99 _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4R5R _refine.ls_number_reflns_obs 64234 _refine.ls_number_reflns_all 67658 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 0.96 _refine.ls_percent_reflns_obs 99.23 _refine.ls_R_factor_obs 0.14868 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14763 _refine.ls_R_factor_R_free 0.16800 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 3425 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.980 _refine.correlation_coeff_Fo_to_Fc_free 0.977 _refine.B_iso_mean 23.012 _refine.aniso_B[1][1] 0.43 _refine.aniso_B[2][2] -0.49 _refine.aniso_B[3][3] 0.03 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.58 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.023 _refine.pdbx_overall_ESU_R_Free 0.023 _refine.overall_SU_ML 0.018 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.758 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1020 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 264 _refine_hist.number_atoms_total 1284 _refine_hist.d_res_high 0.96 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.026 0.022 ? 1052 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.119 1.995 ? 1417 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.601 5.000 ? 136 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 35.873 23.478 ? 46 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.311 15.000 ? 191 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14.230 15.000 ? 12 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.145 0.200 ? 139 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.015 0.022 ? 810 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 2.668 1.500 ? 683 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 3.697 2.000 ? 1094 ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 5.140 3.000 ? 369 ? 'X-RAY DIFFRACTION' r_scbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it 7.376 4.500 ? 322 ? 'X-RAY DIFFRACTION' r_scangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2.770 3.000 ? 1052 ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 0.960 _refine_ls_shell.d_res_low 1.012 _refine_ls_shell.number_reflns_R_work 9150 _refine_ls_shell.R_factor_R_work 0.285 _refine_ls_shell.percent_reflns_obs 96.91 _refine_ls_shell.R_factor_R_free 0.302 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 479 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 9629 _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4R5R _struct.title 'Crystal structure of Rhodostomin KKKRT mutant' _struct.pdbx_descriptor 'Disintegrin rhodostomin (E.C.3.4.24.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4R5R _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'RGD motif, disintegrin, integrin, toxin, rhodostomin, linker region' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 19 SG ? ? A CYS 4 A CYS 19 1_555 ? ? ? ? ? ? ? 2.039 ? disulf2 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 14 SG ? ? A CYS 6 A CYS 14 1_555 ? ? ? ? ? ? ? 2.049 ? disulf3 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 36 SG ? ? A CYS 13 A CYS 36 1_555 ? ? ? ? ? ? ? 2.020 ? disulf4 disulf ? ? A CYS 27 SG ? ? ? 1_555 A CYS 33 SG ? ? A CYS 27 A CYS 33 1_555 ? ? ? ? ? ? ? 2.063 ? disulf5 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 57 SG ? ? A CYS 32 A CYS 57 1_555 ? ? ? ? ? ? ? 2.038 ? disulf6 disulf ? ? A CYS 45 SG ? ? ? 1_555 A CYS 64 SG ? ? A CYS 45 A CYS 64 1_555 ? ? ? ? ? ? ? 2.029 ? disulf7 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 19 SG ? ? B CYS 4 B CYS 19 1_555 ? ? ? ? ? ? ? 2.037 ? disulf8 disulf ? ? B CYS 6 SG ? ? ? 1_555 B CYS 14 SG ? ? B CYS 6 B CYS 14 1_555 ? ? ? ? ? ? ? 2.054 ? disulf9 disulf ? ? B CYS 13 SG ? ? ? 1_555 B CYS 36 SG ? ? B CYS 13 B CYS 36 1_555 ? ? ? ? ? ? ? 2.032 ? disulf10 disulf ? ? B CYS 27 SG ? ? ? 1_555 B CYS 33 SG ? ? B CYS 27 B CYS 33 1_555 ? ? ? ? ? ? ? 2.055 ? disulf11 disulf ? ? B CYS 32 SG ? ? ? 1_555 B CYS 57 SG ? ? B CYS 32 B CYS 57 1_555 ? ? ? ? ? ? ? 2.046 ? disulf12 disulf ? ? B CYS 45 SG ? ? ? 1_555 B CYS 64 SG ? ? B CYS 45 B CYS 64 1_555 ? ? ? ? ? ? ? 2.007 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 33 ? GLU A 34 ? CYS A 33 GLU A 34 A 2 LYS A 37 ? PHE A 38 ? LYS A 37 PHE A 38 B 1 ILE A 44 ? ARG A 46 ? ILE A 44 ARG A 46 B 2 ASP A 55 ? ARG A 56 ? ASP A 55 ARG A 56 C 1 CYS B 33 ? GLU B 34 ? CYS B 33 GLU B 34 C 2 LYS B 37 ? PHE B 38 ? LYS B 37 PHE B 38 D 1 ILE B 44 ? ARG B 46 ? ILE B 44 ARG B 46 D 2 ASP B 55 ? ARG B 56 ? ASP B 55 ARG B 56 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 34 ? N GLU A 34 O LYS A 37 ? O LYS A 37 B 1 2 N CYS A 45 ? N CYS A 45 O ASP A 55 ? O ASP A 55 C 1 2 N GLU B 34 ? N GLU B 34 O LYS B 37 ? O LYS B 37 D 1 2 N CYS B 45 ? N CYS B 45 O ASP B 55 ? O ASP B 55 # _database_PDB_matrix.entry_id 4R5R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4R5R _atom_sites.fract_transf_matrix[1][1] 0.055301 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001252 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012502 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025325 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 CYS 33 33 33 CYS CYS A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 CYS 57 57 57 CYS CYS A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 HIS 68 68 68 HIS HIS A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 CYS 4 4 4 CYS CYS B . n B 1 5 ASP 5 5 5 ASP ASP B . n B 1 6 CYS 6 6 6 CYS CYS B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 SER 8 8 8 SER SER B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 GLU 10 10 10 GLU GLU B . n B 1 11 ASN 11 11 11 ASN ASN B . n B 1 12 PRO 12 12 12 PRO PRO B . n B 1 13 CYS 13 13 13 CYS CYS B . n B 1 14 CYS 14 14 14 CYS CYS B . n B 1 15 ASP 15 15 15 ASP ASP B . n B 1 16 ALA 16 16 16 ALA ALA B . n B 1 17 ALA 17 17 17 ALA ALA B . n B 1 18 THR 18 18 18 THR THR B . n B 1 19 CYS 19 19 19 CYS CYS B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 ARG 22 22 22 ARG ARG B . n B 1 23 PRO 23 23 23 PRO PRO B . n B 1 24 GLY 24 24 24 GLY GLY B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 GLN 26 26 26 GLN GLN B . n B 1 27 CYS 27 27 27 CYS CYS B . n B 1 28 GLY 28 28 28 GLY GLY B . n B 1 29 GLU 29 29 29 GLU GLU B . n B 1 30 GLY 30 30 30 GLY GLY B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 CYS 32 32 32 CYS CYS B . n B 1 33 CYS 33 33 33 CYS CYS B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLN 35 35 35 GLN GLN B . n B 1 36 CYS 36 36 36 CYS CYS B . n B 1 37 LYS 37 37 37 LYS LYS B . n B 1 38 PHE 38 38 38 PHE PHE B . n B 1 39 LYS 39 39 39 LYS LYS B . n B 1 40 LYS 40 40 40 LYS LYS B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 THR 43 43 43 THR THR B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 CYS 45 45 45 CYS CYS B . n B 1 46 ARG 46 46 46 ARG ARG B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 PRO 48 48 48 PRO PRO B . n B 1 49 ARG 49 49 49 ARG ARG B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 ASP 51 51 51 ASP ASP B . n B 1 52 MET 52 52 52 MET MET B . n B 1 53 PRO 53 53 53 PRO PRO B . n B 1 54 ASP 54 54 54 ASP ASP B . n B 1 55 ASP 55 55 55 ASP ASP B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 CYS 57 57 57 CYS CYS B . n B 1 58 THR 58 58 58 THR THR B . n B 1 59 GLY 59 59 59 GLY GLY B . n B 1 60 GLN 60 60 60 GLN GLN B . n B 1 61 SER 61 61 61 SER SER B . n B 1 62 ALA 62 62 62 ALA ALA B . n B 1 63 ASP 63 63 63 ASP ASP B . n B 1 64 CYS 64 64 64 CYS CYS B . n B 1 65 PRO 65 65 65 PRO PRO B . n B 1 66 ARG 66 66 66 ARG ARG B . n B 1 67 TYR 67 67 67 TYR TYR B . n B 1 68 HIS 68 68 68 HIS HIS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 1 HOH HOH A . C 2 HOH 2 102 3 HOH HOH A . C 2 HOH 3 103 4 HOH HOH A . C 2 HOH 4 104 5 HOH HOH A . C 2 HOH 5 105 6 HOH HOH A . C 2 HOH 6 106 7 HOH HOH A . C 2 HOH 7 107 8 HOH HOH A . C 2 HOH 8 108 12 HOH HOH A . C 2 HOH 9 109 15 HOH HOH A . C 2 HOH 10 110 16 HOH HOH A . C 2 HOH 11 111 19 HOH HOH A . C 2 HOH 12 112 24 HOH HOH A . C 2 HOH 13 113 25 HOH HOH A . C 2 HOH 14 114 26 HOH HOH A . C 2 HOH 15 115 28 HOH HOH A . C 2 HOH 16 116 30 HOH HOH A . C 2 HOH 17 117 31 HOH HOH A . C 2 HOH 18 118 33 HOH HOH A . C 2 HOH 19 119 41 HOH HOH A . C 2 HOH 20 120 43 HOH HOH A . C 2 HOH 21 121 44 HOH HOH A . C 2 HOH 22 122 45 HOH HOH A . C 2 HOH 23 123 47 HOH HOH A . C 2 HOH 24 124 48 HOH HOH A . C 2 HOH 25 125 51 HOH HOH A . C 2 HOH 26 126 52 HOH HOH A . C 2 HOH 27 127 53 HOH HOH A . C 2 HOH 28 128 55 HOH HOH A . C 2 HOH 29 129 56 HOH HOH A . C 2 HOH 30 130 60 HOH HOH A . C 2 HOH 31 131 61 HOH HOH A . C 2 HOH 32 132 63 HOH HOH A . C 2 HOH 33 133 64 HOH HOH A . C 2 HOH 34 134 70 HOH HOH A . C 2 HOH 35 135 71 HOH HOH A . C 2 HOH 36 136 72 HOH HOH A . C 2 HOH 37 137 73 HOH HOH A . C 2 HOH 38 138 74 HOH HOH A . C 2 HOH 39 139 81 HOH HOH A . C 2 HOH 40 140 82 HOH HOH A . C 2 HOH 41 141 85 HOH HOH A . C 2 HOH 42 142 88 HOH HOH A . C 2 HOH 43 143 91 HOH HOH A . C 2 HOH 44 144 93 HOH HOH A . C 2 HOH 45 145 94 HOH HOH A . C 2 HOH 46 146 95 HOH HOH A . C 2 HOH 47 147 96 HOH HOH A . C 2 HOH 48 148 97 HOH HOH A . C 2 HOH 49 149 100 HOH HOH A . C 2 HOH 50 150 101 HOH HOH A . C 2 HOH 51 151 107 HOH HOH A . C 2 HOH 52 152 108 HOH HOH A . C 2 HOH 53 153 109 HOH HOH A . C 2 HOH 54 154 110 HOH HOH A . C 2 HOH 55 155 111 HOH HOH A . C 2 HOH 56 156 114 HOH HOH A . C 2 HOH 57 157 119 HOH HOH A . C 2 HOH 58 158 121 HOH HOH A . C 2 HOH 59 159 124 HOH HOH A . C 2 HOH 60 160 125 HOH HOH A . C 2 HOH 61 161 130 HOH HOH A . C 2 HOH 62 162 131 HOH HOH A . C 2 HOH 63 163 132 HOH HOH A . C 2 HOH 64 164 133 HOH HOH A . C 2 HOH 65 165 134 HOH HOH A . C 2 HOH 66 166 137 HOH HOH A . C 2 HOH 67 167 141 HOH HOH A . C 2 HOH 68 168 143 HOH HOH A . C 2 HOH 69 169 146 HOH HOH A . C 2 HOH 70 170 148 HOH HOH A . C 2 HOH 71 171 149 HOH HOH A . C 2 HOH 72 172 150 HOH HOH A . C 2 HOH 73 173 151 HOH HOH A . C 2 HOH 74 174 153 HOH HOH A . C 2 HOH 75 175 154 HOH HOH A . C 2 HOH 76 176 157 HOH HOH A . C 2 HOH 77 177 158 HOH HOH A . C 2 HOH 78 178 159 HOH HOH A . C 2 HOH 79 179 161 HOH HOH A . C 2 HOH 80 180 162 HOH HOH A . C 2 HOH 81 181 167 HOH HOH A . C 2 HOH 82 182 168 HOH HOH A . C 2 HOH 83 183 169 HOH HOH A . C 2 HOH 84 184 173 HOH HOH A . C 2 HOH 85 185 174 HOH HOH A . C 2 HOH 86 186 175 HOH HOH A . C 2 HOH 87 187 178 HOH HOH A . C 2 HOH 88 188 180 HOH HOH A . C 2 HOH 89 189 181 HOH HOH A . C 2 HOH 90 190 183 HOH HOH A . C 2 HOH 91 191 184 HOH HOH A . C 2 HOH 92 192 187 HOH HOH A . C 2 HOH 93 193 188 HOH HOH A . C 2 HOH 94 194 192 HOH HOH A . C 2 HOH 95 195 195 HOH HOH A . C 2 HOH 96 196 196 HOH HOH A . C 2 HOH 97 197 197 HOH HOH A . C 2 HOH 98 198 200 HOH HOH A . C 2 HOH 99 199 201 HOH HOH A . C 2 HOH 100 200 204 HOH HOH A . C 2 HOH 101 201 207 HOH HOH A . C 2 HOH 102 202 208 HOH HOH A . C 2 HOH 103 203 209 HOH HOH A . C 2 HOH 104 204 210 HOH HOH A . C 2 HOH 105 205 214 HOH HOH A . C 2 HOH 106 206 215 HOH HOH A . C 2 HOH 107 207 217 HOH HOH A . C 2 HOH 108 208 219 HOH HOH A . C 2 HOH 109 209 221 HOH HOH A . C 2 HOH 110 210 222 HOH HOH A . C 2 HOH 111 211 223 HOH HOH A . C 2 HOH 112 212 224 HOH HOH A . C 2 HOH 113 213 225 HOH HOH A . C 2 HOH 114 214 227 HOH HOH A . C 2 HOH 115 215 228 HOH HOH A . C 2 HOH 116 216 230 HOH HOH A . C 2 HOH 117 217 231 HOH HOH A . C 2 HOH 118 218 232 HOH HOH A . C 2 HOH 119 219 233 HOH HOH A . C 2 HOH 120 220 236 HOH HOH A . C 2 HOH 121 221 238 HOH HOH A . C 2 HOH 122 222 240 HOH HOH A . C 2 HOH 123 223 241 HOH HOH A . C 2 HOH 124 224 242 HOH HOH A . C 2 HOH 125 225 244 HOH HOH A . C 2 HOH 126 226 245 HOH HOH A . C 2 HOH 127 227 246 HOH HOH A . C 2 HOH 128 228 247 HOH HOH A . C 2 HOH 129 229 250 HOH HOH A . C 2 HOH 130 230 251 HOH HOH A . C 2 HOH 131 231 257 HOH HOH A . C 2 HOH 132 232 262 HOH HOH A . C 2 HOH 133 233 269 HOH HOH A . C 2 HOH 134 234 270 HOH HOH A . C 2 HOH 135 235 271 HOH HOH A . C 2 HOH 136 236 272 HOH HOH A . C 2 HOH 137 237 280 HOH HOH A . C 2 HOH 138 238 281 HOH HOH A . C 2 HOH 139 239 282 HOH HOH A . D 2 HOH 1 101 2 HOH HOH B . D 2 HOH 2 102 9 HOH HOH B . D 2 HOH 3 103 10 HOH HOH B . D 2 HOH 4 104 11 HOH HOH B . D 2 HOH 5 105 13 HOH HOH B . D 2 HOH 6 106 14 HOH HOH B . D 2 HOH 7 107 17 HOH HOH B . D 2 HOH 8 108 18 HOH HOH B . D 2 HOH 9 109 20 HOH HOH B . D 2 HOH 10 110 22 HOH HOH B . D 2 HOH 11 111 23 HOH HOH B . D 2 HOH 12 112 27 HOH HOH B . D 2 HOH 13 113 29 HOH HOH B . D 2 HOH 14 114 32 HOH HOH B . D 2 HOH 15 115 34 HOH HOH B . D 2 HOH 16 116 35 HOH HOH B . D 2 HOH 17 117 36 HOH HOH B . D 2 HOH 18 118 37 HOH HOH B . D 2 HOH 19 119 38 HOH HOH B . D 2 HOH 20 120 39 HOH HOH B . D 2 HOH 21 121 40 HOH HOH B . D 2 HOH 22 122 42 HOH HOH B . D 2 HOH 23 123 46 HOH HOH B . D 2 HOH 24 124 49 HOH HOH B . D 2 HOH 25 125 50 HOH HOH B . D 2 HOH 26 126 54 HOH HOH B . D 2 HOH 27 127 57 HOH HOH B . D 2 HOH 28 128 58 HOH HOH B . D 2 HOH 29 129 62 HOH HOH B . D 2 HOH 30 130 65 HOH HOH B . D 2 HOH 31 131 66 HOH HOH B . D 2 HOH 32 132 67 HOH HOH B . D 2 HOH 33 133 68 HOH HOH B . D 2 HOH 34 134 69 HOH HOH B . D 2 HOH 35 135 75 HOH HOH B . D 2 HOH 36 136 77 HOH HOH B . D 2 HOH 37 137 79 HOH HOH B . D 2 HOH 38 138 80 HOH HOH B . D 2 HOH 39 139 83 HOH HOH B . D 2 HOH 40 140 84 HOH HOH B . D 2 HOH 41 141 87 HOH HOH B . D 2 HOH 42 142 89 HOH HOH B . D 2 HOH 43 143 90 HOH HOH B . D 2 HOH 44 144 92 HOH HOH B . D 2 HOH 45 145 98 HOH HOH B . D 2 HOH 46 146 99 HOH HOH B . D 2 HOH 47 147 102 HOH HOH B . D 2 HOH 48 148 104 HOH HOH B . D 2 HOH 49 149 105 HOH HOH B . D 2 HOH 50 150 106 HOH HOH B . D 2 HOH 51 151 112 HOH HOH B . D 2 HOH 52 152 113 HOH HOH B . D 2 HOH 53 153 116 HOH HOH B . D 2 HOH 54 154 117 HOH HOH B . D 2 HOH 55 155 118 HOH HOH B . D 2 HOH 56 156 120 HOH HOH B . D 2 HOH 57 157 122 HOH HOH B . D 2 HOH 58 158 123 HOH HOH B . D 2 HOH 59 159 126 HOH HOH B . D 2 HOH 60 160 127 HOH HOH B . D 2 HOH 61 161 128 HOH HOH B . D 2 HOH 62 162 129 HOH HOH B . D 2 HOH 63 163 135 HOH HOH B . D 2 HOH 64 164 136 HOH HOH B . D 2 HOH 65 165 139 HOH HOH B . D 2 HOH 66 166 140 HOH HOH B . D 2 HOH 67 167 142 HOH HOH B . D 2 HOH 68 168 144 HOH HOH B . D 2 HOH 69 169 145 HOH HOH B . D 2 HOH 70 170 147 HOH HOH B . D 2 HOH 71 171 152 HOH HOH B . D 2 HOH 72 172 155 HOH HOH B . D 2 HOH 73 173 156 HOH HOH B . D 2 HOH 74 174 160 HOH HOH B . D 2 HOH 75 175 164 HOH HOH B . D 2 HOH 76 176 165 HOH HOH B . D 2 HOH 77 177 166 HOH HOH B . D 2 HOH 78 178 170 HOH HOH B . D 2 HOH 79 179 171 HOH HOH B . D 2 HOH 80 180 172 HOH HOH B . D 2 HOH 81 181 176 HOH HOH B . D 2 HOH 82 182 177 HOH HOH B . D 2 HOH 83 183 179 HOH HOH B . D 2 HOH 84 184 182 HOH HOH B . D 2 HOH 85 185 185 HOH HOH B . D 2 HOH 86 186 186 HOH HOH B . D 2 HOH 87 187 189 HOH HOH B . D 2 HOH 88 188 190 HOH HOH B . D 2 HOH 89 189 191 HOH HOH B . D 2 HOH 90 190 193 HOH HOH B . D 2 HOH 91 191 198 HOH HOH B . D 2 HOH 92 192 199 HOH HOH B . D 2 HOH 93 193 202 HOH HOH B . D 2 HOH 94 194 203 HOH HOH B . D 2 HOH 95 195 206 HOH HOH B . D 2 HOH 96 196 211 HOH HOH B . D 2 HOH 97 197 212 HOH HOH B . D 2 HOH 98 198 213 HOH HOH B . D 2 HOH 99 199 220 HOH HOH B . D 2 HOH 100 200 226 HOH HOH B . D 2 HOH 101 201 229 HOH HOH B . D 2 HOH 102 202 234 HOH HOH B . D 2 HOH 103 203 235 HOH HOH B . D 2 HOH 104 204 237 HOH HOH B . D 2 HOH 105 205 239 HOH HOH B . D 2 HOH 106 206 243 HOH HOH B . D 2 HOH 107 207 248 HOH HOH B . D 2 HOH 108 208 254 HOH HOH B . D 2 HOH 109 209 255 HOH HOH B . D 2 HOH 110 210 256 HOH HOH B . D 2 HOH 111 211 258 HOH HOH B . D 2 HOH 112 212 259 HOH HOH B . D 2 HOH 113 213 260 HOH HOH B . D 2 HOH 114 214 261 HOH HOH B . D 2 HOH 115 215 263 HOH HOH B . D 2 HOH 116 216 264 HOH HOH B . D 2 HOH 117 217 265 HOH HOH B . D 2 HOH 118 218 266 HOH HOH B . D 2 HOH 119 219 267 HOH HOH B . D 2 HOH 120 220 268 HOH HOH B . D 2 HOH 121 221 275 HOH HOH B . D 2 HOH 122 222 276 HOH HOH B . D 2 HOH 123 223 277 HOH HOH B . D 2 HOH 124 224 278 HOH HOH B . D 2 HOH 125 225 279 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-26 2 'Structure model' 1 1 2017-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -2.5394 11.1468 -12.5887 0.0068 0.0216 0.0183 -0.0040 0.0045 -0.0013 0.2791 0.7200 0.3225 0.4247 0.2567 0.3009 0.0080 0.0075 -0.0155 0.0088 0.0003 0.0070 0.0132 0.0091 0.0071 'X-RAY DIFFRACTION' 2 ? refined -4.2974 20.7574 -32.5234 0.0211 0.0172 0.0111 -0.0095 -0.0015 0.0046 0.3883 0.2978 0.2333 0.2928 -0.1985 -0.2111 0.0171 -0.0209 0.0038 -0.0227 -0.0316 -0.0216 0.0271 -0.0161 0.0054 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 68 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 1 B 68 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 128 ? ? O A HOH 239 ? ? 1.67 2 1 O B HOH 156 ? ? O B HOH 218 ? ? 1.79 3 1 O A HOH 205 ? ? O A HOH 235 ? ? 2.05 4 1 O B HOH 181 ? ? O B HOH 219 ? ? 2.10 5 1 O A HOH 202 ? ? O A HOH 238 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 136 ? ? 1_555 O B HOH 218 ? ? 1_455 2.04 2 1 NH1 A ARG 49 ? ? 1_555 O A HOH 221 ? ? 2_554 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 3 ? ? OE1 A GLU 3 ? ? 1.150 1.252 -0.102 0.011 N 2 1 CB B GLU 29 ? ? CG B GLU 29 ? ? 1.291 1.517 -0.226 0.019 N 3 1 CG B GLU 29 ? ? CD B GLU 29 ? ? 1.403 1.515 -0.112 0.015 N 4 1 CD B GLU 29 ? ? OE1 B GLU 29 ? ? 1.340 1.252 0.088 0.011 N 5 1 CD B GLU 29 ? ? OE2 B GLU 29 ? ? 1.116 1.252 -0.136 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OE1 A GLU 3 ? ? CD A GLU 3 ? ? OE2 A GLU 3 ? ? 111.94 123.30 -11.36 1.20 N 2 1 CD A ARG 49 ? ? NE A ARG 49 ? ? CZ A ARG 49 ? ? 132.00 123.60 8.40 1.40 N 3 1 NE A ARG 49 ? ? CZ A ARG 49 ? ? NH1 A ARG 49 ? ? 123.34 120.30 3.04 0.50 N 4 1 NE A ARG 49 ? ? CZ A ARG 49 ? ? NH2 A ARG 49 ? ? 116.94 120.30 -3.36 0.50 N 5 1 NE B ARG 22 ? ? CZ B ARG 22 ? ? NH1 B ARG 22 ? ? 123.75 120.30 3.45 0.50 N 6 1 O B GLY 28 ? ? C B GLY 28 ? ? N B GLU 29 ? ? 112.58 122.70 -10.12 1.60 Y 7 1 CD B LYS 37 ? ? CE B LYS 37 ? ? NZ B LYS 37 ? ? 92.15 111.70 -19.55 2.30 N 8 1 NE B ARG 46 ? ? CZ B ARG 46 ? ? NH1 B ARG 46 ? ? 123.66 120.30 3.36 0.50 N 9 1 NE B ARG 56 ? ? CZ B ARG 56 ? ? NH2 B ARG 56 ? ? 117.05 120.30 -3.25 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 51 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -89.39 _pdbx_validate_torsion.psi 43.88 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #