HEADER HYDROLASE/HYDROLASE INHIBITOR 22-AUG-14 4R5T TITLE STRUCTURE OF THE M1 ALANYLAMINOPEPTIDASE FROM MALARIA COMPLEXED WITH A TITLE 2 HYDROXAMIC ACID-BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1 FAMILY AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 195-1084; COMPND 5 SYNONYM: PFA-M1; COMPND 6 EC: 3.4.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM FCB1/COLUMBIA; SOURCE 3 ORGANISM_TAXID: 186763; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTRCHIS-2B KEYWDS PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.DRINKWATER,S.MCGOWAN REVDAT 3 20-SEP-23 4R5T 1 REMARK SEQADV LINK REVDAT 2 26-NOV-14 4R5T 1 JRNL REVDAT 1 29-OCT-14 4R5T 0 JRNL AUTH S.N.MISTRY,N.DRINKWATER,C.RUGGERI,K.K.SIVARAMAN, JRNL AUTH 2 S.LOGANATHAN,S.FLETCHER,M.DRAG,A.PAIARDINI,V.M.AVERY, JRNL AUTH 3 P.J.SCAMMELLS,S.MCGOWAN JRNL TITL TWO-PRONGED ATTACK: DUAL INHIBITION OF PLASMODIUM FALCIPARUM JRNL TITL 2 M1 AND M17 METALLOAMINOPEPTIDASES BY A NOVEL SERIES OF JRNL TITL 3 HYDROXAMIC ACID-BASED INHIBITORS. JRNL REF J.MED.CHEM. V. 57 9168 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25299353 JRNL DOI 10.1021/JM501323A REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 68669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.5233 3.6062 10.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.1796 REMARK 3 T33: 0.1631 T12: 0.0016 REMARK 3 T13: 0.0371 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.3608 L22: 1.1465 REMARK 3 L33: 0.8797 L12: -0.2730 REMARK 3 L13: 0.0193 L23: 0.3500 REMARK 3 S TENSOR REMARK 3 S11: -0.1127 S12: -0.0690 S13: 0.0701 REMARK 3 S21: 0.0694 S22: 0.0819 S23: 0.0363 REMARK 3 S31: -0.1926 S32: 0.0288 S33: -0.0208 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R5T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000086935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SILICON 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68739 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 37.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 20.60 REMARK 200 R MERGE (I) : 0.16900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.80 REMARK 200 R MERGE FOR SHELL (I) : 0.02000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (V/V) PEG 8000, 10* (V/V) REMARK 280 GLYCEROL, 0.1 M TRIS PH 8.5, 0.2 M MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.59650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.24500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.79350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.24500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.59650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.79350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 ASP A 611 REMARK 465 GLY A 612 REMARK 465 ASN A 613 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 198 CD1 REMARK 470 LYS A 202 CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 ARG A 228 CD NE CZ NH1 NH2 REMARK 470 LYS A 237 NZ REMARK 470 LYS A 261 CE NZ REMARK 470 VAL A 264 CG1 CG2 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 LYS A 281 CD CE NZ REMARK 470 LYS A 285 CE NZ REMARK 470 LYS A 287 NZ REMARK 470 GLU A 299 CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 LYS A 347 CE NZ REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 LYS A 349 CE NZ REMARK 470 LYS A 393 NZ REMARK 470 LYS A 405 CE NZ REMARK 470 LYS A 406 NZ REMARK 470 GLU A 409 CD OE1 OE2 REMARK 470 LYS A 465 CD CE NZ REMARK 470 LYS A 480 CE NZ REMARK 470 VAL A 507 CG1 CG2 REMARK 470 THR A 508 OG1 CG2 REMARK 470 LEU A 546 CG CD1 CD2 REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 LYS A 601 CG CD CE NZ REMARK 470 LYS A 608 CG CD CE NZ REMARK 470 GLU A 663 CG CD OE1 OE2 REMARK 470 LYS A 682 CG CD CE NZ REMARK 470 GLU A 683 CG CD OE1 OE2 REMARK 470 GLU A 699 CG CD OE1 OE2 REMARK 470 LYS A 785 CE NZ REMARK 470 LYS A 790 CG CD CE NZ REMARK 470 HIS A 815 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 941 CG CD CE NZ REMARK 470 LYS A 951 CG CD CE NZ REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 GLU A 977 CD OE1 OE2 REMARK 470 LYS A 980 CD CE NZ REMARK 470 ASP A 989 CG OD1 OD2 REMARK 470 LYS A1019 CG CD CE NZ REMARK 470 LYS A1030 CE NZ REMARK 470 LYS A1052 CG CD CE NZ REMARK 470 GLU A1055 CG CD OE1 OE2 REMARK 470 GLN A1066 CD OE1 NE2 REMARK 470 LYS A1075 CE NZ REMARK 470 LYS A1084 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1298 O HOH A 1594 2.13 REMARK 500 O HOH A 1313 O HOH A 1527 2.14 REMARK 500 OD2 ASP A 843 O HOH A 1674 2.14 REMARK 500 OD2 ASP A 634 OG SER A 636 2.17 REMARK 500 O HOH A 1334 O HOH A 1335 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 240 32.68 -145.50 REMARK 500 GLU A 274 -47.45 -136.71 REMARK 500 LYS A 311 -113.57 60.33 REMARK 500 VAL A 459 -159.03 -126.24 REMARK 500 LYS A 465 99.94 -54.39 REMARK 500 LEU A 475 -32.03 -132.24 REMARK 500 ARG A 506 -40.59 85.10 REMARK 500 ARG A 506 -27.88 81.15 REMARK 500 SER A 549 -68.80 -94.89 REMARK 500 PHE A 736 70.25 59.59 REMARK 500 ASP A 974 30.97 -93.51 REMARK 500 VAL A 986 -53.95 -120.86 REMARK 500 LYS A 988 -132.34 56.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 496 NE2 REMARK 620 2 HIS A 500 NE2 103.7 REMARK 620 3 GLU A 519 OE1 109.6 107.0 REMARK 620 4 R5T A1112 O 106.3 142.7 83.1 REMARK 620 5 R5T A1112 OAF 94.2 87.2 147.7 69.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1110 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1111 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5T A 1112 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EBG RELATED DB: PDB REMARK 900 UNLIGANDED FORM OF ENZYME REMARK 900 RELATED ID: 4R5V RELATED DB: PDB REMARK 900 RELATED ID: 4R5X RELATED DB: PDB REMARK 900 RELATED ID: 4R6T RELATED DB: PDB REMARK 900 RELATED ID: 4R76 RELATED DB: PDB REMARK 900 RELATED ID: 4R7M RELATED DB: PDB DBREF 4R5T A 196 1084 UNP O96935 AMP1_PLAFQ 196 1084 SEQADV 4R5T HIS A 189 UNP O96935 EXPRESSION TAG SEQADV 4R5T HIS A 190 UNP O96935 EXPRESSION TAG SEQADV 4R5T HIS A 191 UNP O96935 EXPRESSION TAG SEQADV 4R5T HIS A 192 UNP O96935 EXPRESSION TAG SEQADV 4R5T HIS A 193 UNP O96935 EXPRESSION TAG SEQADV 4R5T HIS A 194 UNP O96935 EXPRESSION TAG SEQADV 4R5T HIS A 195 UNP O96935 EXPRESSION TAG SEQADV 4R5T GLN A 213 UNP O96935 ASN 213 ENGINEERED MUTATION SEQADV 4R5T GLN A 223 UNP O96935 ASN 223 ENGINEERED MUTATION SEQADV 4R5T PRO A 378 UNP O96935 HIS 378 ENGINEERED MUTATION SEQADV 4R5T GLN A 501 UNP O96935 ASN 501 ENGINEERED MUTATION SEQADV 4R5T GLN A 745 UNP O96935 ASN 745 ENGINEERED MUTATION SEQADV 4R5T GLN A 795 UNP O96935 ASN 795 ENGINEERED MUTATION SEQADV 4R5T GLN A 1069 UNP O96935 ASN 1069 ENGINEERED MUTATION SEQRES 1 A 896 HIS HIS HIS HIS HIS HIS HIS PRO LYS ILE HIS TYR ARG SEQRES 2 A 896 LYS ASP TYR LYS PRO SER GLY PHE ILE ILE ASN GLN VAL SEQRES 3 A 896 THR LEU ASN ILE ASN ILE HIS ASP GLN GLU THR ILE VAL SEQRES 4 A 896 ARG SER VAL LEU ASP MET ASP ILE SER LYS HIS ASN VAL SEQRES 5 A 896 GLY GLU ASP LEU VAL PHE ASP GLY VAL GLY LEU LYS ILE SEQRES 6 A 896 ASN GLU ILE SER ILE ASN ASN LYS LYS LEU VAL GLU GLY SEQRES 7 A 896 GLU GLU TYR THR TYR ASP ASN GLU PHE LEU THR ILE PHE SEQRES 8 A 896 SER LYS PHE VAL PRO LYS SER LYS PHE ALA PHE SER SER SEQRES 9 A 896 GLU VAL ILE ILE HIS PRO GLU THR ASN TYR ALA LEU THR SEQRES 10 A 896 GLY LEU TYR LYS SER LYS ASN ILE ILE VAL SER GLN CYS SEQRES 11 A 896 GLU ALA THR GLY PHE ARG ARG ILE THR PHE PHE ILE ASP SEQRES 12 A 896 ARG PRO ASP MET MET ALA LYS TYR ASP VAL THR VAL THR SEQRES 13 A 896 ALA ASP LYS GLU LYS TYR PRO VAL LEU LEU SER ASN GLY SEQRES 14 A 896 ASP LYS VAL ASN GLU PHE GLU ILE PRO GLY GLY ARG HIS SEQRES 15 A 896 GLY ALA ARG PHE ASN ASP PRO PRO LEU LYS PRO CYS TYR SEQRES 16 A 896 LEU PHE ALA VAL VAL ALA GLY ASP LEU LYS HIS LEU SER SEQRES 17 A 896 ALA THR TYR ILE THR LYS TYR THR LYS LYS LYS VAL GLU SEQRES 18 A 896 LEU TYR VAL PHE SER GLU GLU LYS TYR VAL SER LYS LEU SEQRES 19 A 896 GLN TRP ALA LEU GLU CYS LEU LYS LYS SER MET ALA PHE SEQRES 20 A 896 ASP GLU ASP TYR PHE GLY LEU GLU TYR ASP LEU SER ARG SEQRES 21 A 896 LEU ASN LEU VAL ALA VAL SER ASP PHE ASN VAL GLY ALA SEQRES 22 A 896 MET GLU ASN LYS GLY LEU ASN ILE PHE ASN ALA ASN SER SEQRES 23 A 896 LEU LEU ALA SER LYS LYS ASN SER ILE ASP PHE SER TYR SEQRES 24 A 896 ALA ARG ILE LEU THR VAL VAL GLY HIS GLU TYR PHE HIS SEQRES 25 A 896 GLN TYR THR GLY ASN ARG VAL THR LEU ARG ASP TRP PHE SEQRES 26 A 896 GLN LEU THR LEU LYS GLU GLY LEU THR VAL HIS ARG GLU SEQRES 27 A 896 ASN LEU PHE SER GLU GLU MET THR LYS THR VAL THR THR SEQRES 28 A 896 ARG LEU SER HIS VAL ASP LEU LEU ARG SER VAL GLN PHE SEQRES 29 A 896 LEU GLU ASP SER SER PRO LEU SER HIS PRO ILE ARG PRO SEQRES 30 A 896 GLU SER TYR VAL SER MET GLU ASN PHE TYR THR THR THR SEQRES 31 A 896 VAL TYR ASP LYS GLY SER GLU VAL MET ARG MET TYR LEU SEQRES 32 A 896 THR ILE LEU GLY GLU GLU TYR TYR LYS LYS GLY PHE ASP SEQRES 33 A 896 ILE TYR ILE LYS LYS ASN ASP GLY ASN THR ALA THR CYS SEQRES 34 A 896 GLU ASP PHE ASN TYR ALA MET GLU GLN ALA TYR LYS MET SEQRES 35 A 896 LYS LYS ALA ASP ASN SER ALA ASN LEU ASN GLN TYR LEU SEQRES 36 A 896 LEU TRP PHE SER GLN SER GLY THR PRO HIS VAL SER PHE SEQRES 37 A 896 LYS TYR ASN TYR ASP ALA GLU LYS LYS GLN TYR SER ILE SEQRES 38 A 896 HIS VAL ASN GLN TYR THR LYS PRO ASP GLU ASN GLN LYS SEQRES 39 A 896 GLU LYS LYS PRO LEU PHE ILE PRO ILE SER VAL GLY LEU SEQRES 40 A 896 ILE ASN PRO GLU ASN GLY LYS GLU MET ILE SER GLN THR SEQRES 41 A 896 THR LEU GLU LEU THR LYS GLU SER ASP THR PHE VAL PHE SEQRES 42 A 896 ASN ASN ILE ALA VAL LYS PRO ILE PRO SER LEU PHE ARG SEQRES 43 A 896 GLY PHE SER ALA PRO VAL TYR ILE GLU ASP GLN LEU THR SEQRES 44 A 896 ASP GLU GLU ARG ILE LEU LEU LEU LYS TYR ASP SER ASP SEQRES 45 A 896 ALA PHE VAL ARG TYR ASN SER CYS THR ASN ILE TYR MET SEQRES 46 A 896 LYS GLN ILE LEU MET ASN TYR ASN GLU PHE LEU LYS ALA SEQRES 47 A 896 LYS ASN GLU LYS LEU GLU SER PHE GLN LEU THR PRO VAL SEQRES 48 A 896 ASN ALA GLN PHE ILE ASP ALA ILE LYS TYR LEU LEU GLU SEQRES 49 A 896 ASP PRO HIS ALA ASP ALA GLY PHE LYS SER TYR ILE VAL SEQRES 50 A 896 SER LEU PRO GLN ASP ARG TYR ILE ILE ASN PHE VAL SER SEQRES 51 A 896 ASN LEU ASP THR ASP VAL LEU ALA ASP THR LYS GLU TYR SEQRES 52 A 896 ILE TYR LYS GLN ILE GLY ASP LYS LEU ASN ASP VAL TYR SEQRES 53 A 896 TYR LYS MET PHE LYS SER LEU GLU ALA LYS ALA ASP ASP SEQRES 54 A 896 LEU THR TYR PHE ASN ASP GLU SER HIS VAL ASP PHE ASP SEQRES 55 A 896 GLN MET ASN MET ARG THR LEU ARG ASN THR LEU LEU SER SEQRES 56 A 896 LEU LEU SER LYS ALA GLN TYR PRO ASN ILE LEU ASN GLU SEQRES 57 A 896 ILE ILE GLU HIS SER LYS SER PRO TYR PRO SER ASN TRP SEQRES 58 A 896 LEU THR SER LEU SER VAL SER ALA TYR PHE ASP LYS TYR SEQRES 59 A 896 PHE GLU LEU TYR ASP LYS THR TYR LYS LEU SER LYS ASP SEQRES 60 A 896 ASP GLU LEU LEU LEU GLN GLU TRP LEU LYS THR VAL SER SEQRES 61 A 896 ARG SER ASP ARG LYS ASP ILE TYR GLU ILE LEU LYS LYS SEQRES 62 A 896 LEU GLU ASN GLU VAL LEU LYS ASP SER LYS ASN PRO ASN SEQRES 63 A 896 ASP ILE ARG ALA VAL TYR LEU PRO PHE THR ASN ASN LEU SEQRES 64 A 896 ARG ARG PHE HIS ASP ILE SER GLY LYS GLY TYR LYS LEU SEQRES 65 A 896 ILE ALA GLU VAL ILE THR LYS THR ASP LYS PHE ASN PRO SEQRES 66 A 896 MET VAL ALA THR GLN LEU CYS GLU PRO PHE LYS LEU TRP SEQRES 67 A 896 ASN LYS LEU ASP THR LYS ARG GLN GLU LEU MET LEU ASN SEQRES 68 A 896 GLU MET ASN THR MET LEU GLN GLU PRO GLN ILE SER ASN SEQRES 69 A 896 ASN LEU LYS GLU TYR LEU LEU ARG LEU THR ASN LYS HET ZN A1101 1 HET DMS A1102 4 HET DMS A1103 10 HET GOL A1104 6 HET GOL A1105 6 HET GOL A1106 6 HET GOL A1107 6 HET GOL A1108 6 HET GOL A1109 6 HET GOL A1110 6 HET GOL A1111 6 HET R5T A1112 24 HETNAM ZN ZINC ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETNAM R5T TERT-BUTYL {(1S)-2-(HYDROXYAMINO)-2-OXO-1-[4-(1H- HETNAM 2 R5T PYRAZOL-1-YL)PHENYL]ETHYL}CARBAMATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 DMS 2(C2 H6 O S) FORMUL 5 GOL 8(C3 H8 O3) FORMUL 13 R5T C16 H20 N4 O4 FORMUL 14 HOH *479(H2 O) HELIX 1 1 LYS A 202 TYR A 204 5 3 HELIX 2 2 SER A 280 VAL A 283 5 4 HELIX 3 3 HIS A 297 ASN A 301 5 5 HELIX 4 4 GLY A 322 ILE A 326 5 5 HELIX 5 5 PRO A 381 PHE A 385 5 5 HELIX 6 6 LYS A 417 LYS A 421 5 5 HELIX 7 7 LEU A 422 GLY A 441 1 20 HELIX 8 8 ASN A 473 LEU A 475 5 3 HELIX 9 9 ASP A 484 ASN A 505 1 22 HELIX 10 10 ASP A 511 PHE A 513 5 3 HELIX 11 11 GLN A 514 LYS A 535 1 22 HELIX 12 12 VAL A 537 SER A 557 1 21 HELIX 13 13 SER A 570 PHE A 574 5 5 HELIX 14 14 THR A 576 ASN A 610 1 35 HELIX 15 15 THR A 616 ALA A 633 1 18 HELIX 16 16 ASN A 640 TYR A 642 5 3 HELIX 17 17 LEU A 643 GLN A 648 1 6 HELIX 18 18 THR A 747 ASP A 758 1 12 HELIX 19 19 ASP A 760 GLU A 789 1 30 HELIX 20 20 ASN A 800 GLU A 812 1 13 HELIX 21 21 ASP A 817 VAL A 825 1 9 HELIX 22 22 GLN A 829 ILE A 834 1 6 HELIX 23 23 ASN A 835 VAL A 837 5 3 HELIX 24 24 ASP A 841 LEU A 871 1 31 HELIX 25 25 LEU A 871 ASP A 876 1 6 HELIX 26 26 ASP A 888 ALA A 908 1 21 HELIX 27 27 ASN A 912 SER A 921 1 10 HELIX 28 28 TYR A 925 SER A 936 1 12 HELIX 29 29 ALA A 937 ASP A 940 5 4 HELIX 30 30 LYS A 941 LYS A 954 1 14 HELIX 31 31 ASP A 956 ARG A 969 1 14 HELIX 32 32 ASP A 974 VAL A 986 1 13 HELIX 33 33 ASN A 992 ASN A 1005 1 14 HELIX 34 34 ASN A 1006 HIS A 1011 1 6 HELIX 35 35 GLY A 1015 LYS A 1030 1 16 HELIX 36 36 ASN A 1032 LEU A 1039 1 8 HELIX 37 37 CYS A 1040 LEU A 1049 5 10 HELIX 38 38 ASP A 1050 GLU A 1067 1 18 HELIX 39 39 SER A 1071 THR A 1082 1 12 SHEET 1 A 2 HIS A 199 TYR A 200 0 SHEET 2 A 2 SER A 567 TYR A 568 -1 O TYR A 568 N HIS A 199 SHEET 1 B 8 LYS A 261 LYS A 262 0 SHEET 2 B 8 LYS A 252 ILE A 258 -1 N ILE A 258 O LYS A 261 SHEET 3 B 8 PHE A 288 ILE A 296 -1 O GLU A 293 N ASN A 254 SHEET 4 B 8 THR A 225 ILE A 235 -1 N LEU A 231 O PHE A 290 SHEET 5 B 8 PHE A 209 ILE A 220 -1 N ASN A 219 O ILE A 226 SHEET 6 B 8 ALA A 337 ASP A 346 1 O THR A 342 N LEU A 216 SHEET 7 B 8 ARG A 369 LYS A 380 -1 O PHE A 374 N VAL A 341 SHEET 8 B 8 ASP A 358 ILE A 365 -1 N ILE A 365 O ARG A 369 SHEET 1 C 3 LEU A 244 ASP A 247 0 SHEET 2 C 3 PHE A 275 ILE A 278 -1 O ILE A 278 N LEU A 244 SHEET 3 C 3 TYR A 269 TYR A 271 -1 N THR A 270 O THR A 277 SHEET 1 D 4 GLY A 306 SER A 310 0 SHEET 2 D 4 ILE A 313 GLN A 317 -1 O ILE A 313 N SER A 310 SHEET 3 D 4 VAL A 387 GLY A 390 -1 O ALA A 389 N ILE A 314 SHEET 4 D 4 VAL A 352 SER A 355 -1 N LEU A 354 O VAL A 388 SHEET 1 E 5 LEU A 392 ILE A 400 0 SHEET 2 E 5 LYS A 407 GLU A 415 -1 O LEU A 410 N ALA A 397 SHEET 3 E 5 ARG A 448 VAL A 454 1 O LEU A 451 N PHE A 413 SHEET 4 E 5 LEU A 467 ASN A 471 1 O PHE A 470 N VAL A 452 SHEET 5 E 5 ALA A 461 MET A 462 -1 N MET A 462 O ILE A 469 SHEET 1 F 4 SER A 716 PHE A 721 0 SHEET 2 F 4 GLN A 666 TYR A 674 -1 N TYR A 667 O PHE A 721 SHEET 3 F 4 HIS A 653 ASP A 661 -1 N HIS A 653 O TYR A 674 SHEET 4 F 4 TYR A 741 GLU A 743 1 O TYR A 741 N VAL A 654 SHEET 1 G 3 THR A 708 LEU A 712 0 SHEET 2 G 3 ILE A 689 ILE A 696 -1 N ILE A 691 O LEU A 710 SHEET 3 G 3 ILE A 729 LEU A 732 -1 O SER A 731 N GLY A 694 LINK NE2 HIS A 496 ZN ZN A1101 1555 1555 2.19 LINK NE2 HIS A 500 ZN ZN A1101 1555 1555 1.99 LINK OE1 GLU A 519 ZN ZN A1101 1555 1555 2.00 LINK ZN ZN A1101 O R5T A1112 1555 1555 2.12 LINK ZN ZN A1101 OAF R5T A1112 1555 1555 2.60 CISPEP 1 GLU A 319 ALA A 320 0 4.75 SITE 1 AC1 4 HIS A 496 HIS A 500 GLU A 519 R5T A1112 SITE 1 AC2 2 ASN A 573 THR A1037 SITE 1 AC3 4 GLU A 957 SER A 990 ASN A 992 ASP A 995 SITE 1 AC4 7 GLY A 250 LYS A 252 ILE A 295 ILE A 296 SITE 2 AC4 7 HIS A 297 GLU A 699 HOH A1371 SITE 1 AC5 6 MET A 533 THR A 534 VAL A 887 ASP A 888 SITE 2 AC5 6 PHE A 889 ASP A 890 SITE 1 AC6 7 HIS A 653 LYS A 676 ASN A 835 PHE A 836 SITE 2 AC6 7 HOH A1309 HOH A1317 HOH A1631 SITE 1 AC7 4 SER A 826 TYR A 853 SER A 903 HOH A1661 SITE 1 AC8 5 SER A 822 TYR A 823 SER A 826 THR A 896 SITE 2 AC8 5 GOL A1111 SITE 1 AC9 9 VAL A 459 GLY A 460 ASN A 471 ASN A 473 SITE 2 AC9 9 SER A 474 ARG A 489 ASN A 994 ARG A 997 SITE 3 AC9 9 HOH A1209 SITE 1 BC1 4 LYS A 535 ASP A 817 ASP A 890 HOH A1247 SITE 1 BC2 8 TYR A 765 THR A 769 TYR A 772 TYR A 823 SITE 2 BC2 8 SER A 826 LEU A 827 PRO A 828 GOL A1108 SITE 1 BC3 15 GLU A 319 ALA A 320 VAL A 459 GLY A 460 SITE 2 BC3 15 ALA A 461 GLU A 463 ARG A 489 HIS A 496 SITE 3 BC3 15 GLU A 497 HIS A 500 GLU A 519 TYR A 575 SITE 4 BC3 15 TYR A 580 ZN A1101 HOH A1679 CRYST1 75.193 109.587 118.490 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013299 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008440 0.00000