HEADER HYDROLASE/HYDROLASE INHIBITOR 22-AUG-14 4R5X TITLE STRUCTURE OF THE M1 ALANYLAMINOPEPTIDASE FROM MALARIA COMPLEXED WITH A TITLE 2 HYDROXAMIC ACID-BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1 FAMILY AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 195-1084; COMPND 5 SYNONYM: PFA-M1; COMPND 6 EC: 3.4.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM FCB1/COLUMBIA; SOURCE 3 ORGANISM_TAXID: 186763; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTRCHIS-2B KEYWDS PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.DRINKWATER,S.MCGOWAN REVDAT 3 28-FEB-24 4R5X 1 REMARK SEQADV SHEET LINK REVDAT 2 26-NOV-14 4R5X 1 JRNL REVDAT 1 29-OCT-14 4R5X 0 JRNL AUTH S.N.MISTRY,N.DRINKWATER,C.RUGGERI,K.K.SIVARAMAN, JRNL AUTH 2 S.LOGANATHAN,S.FLETCHER,M.DRAG,A.PAIARDINI,V.M.AVERY, JRNL AUTH 3 P.J.SCAMMELLS,S.MCGOWAN JRNL TITL TWO-PRONGED ATTACK: DUAL INHIBITION OF PLASMODIUM FALCIPARUM JRNL TITL 2 M1 AND M17 METALLOAMINOPEPTIDASES BY A NOVEL SERIES OF JRNL TITL 3 HYDROXAMIC ACID-BASED INHIBITORS. JRNL REF J.MED.CHEM. V. 57 9168 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25299353 JRNL DOI 10.1021/JM501323A REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 83420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 4224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4050 - 5.7449 1.00 2825 172 0.1682 0.1880 REMARK 3 2 5.7449 - 4.5612 1.00 2723 148 0.1457 0.1712 REMARK 3 3 4.5612 - 3.9850 1.00 2718 128 0.1347 0.1696 REMARK 3 4 3.9850 - 3.6208 1.00 2680 156 0.1480 0.1656 REMARK 3 5 3.6208 - 3.3613 1.00 2689 122 0.1474 0.1768 REMARK 3 6 3.3613 - 3.1632 1.00 2637 143 0.1554 0.2226 REMARK 3 7 3.1632 - 3.0048 1.00 2674 132 0.1661 0.1930 REMARK 3 8 3.0048 - 2.8740 1.00 2648 139 0.1598 0.2284 REMARK 3 9 2.8740 - 2.7634 1.00 2638 147 0.1611 0.2113 REMARK 3 10 2.7634 - 2.6681 1.00 2645 141 0.1634 0.1916 REMARK 3 11 2.6681 - 2.5846 1.00 2631 136 0.1627 0.2155 REMARK 3 12 2.5846 - 2.5108 1.00 2634 143 0.1575 0.2098 REMARK 3 13 2.5108 - 2.4447 1.00 2626 153 0.1619 0.2010 REMARK 3 14 2.4447 - 2.3850 1.00 2636 124 0.1603 0.2178 REMARK 3 15 2.3850 - 2.3308 1.00 2599 139 0.1627 0.2123 REMARK 3 16 2.3308 - 2.2812 1.00 2646 134 0.1680 0.2588 REMARK 3 17 2.2812 - 2.2356 1.00 2645 134 0.1674 0.2177 REMARK 3 18 2.2356 - 2.1934 1.00 2625 123 0.1645 0.2325 REMARK 3 19 2.1934 - 2.1542 1.00 2604 156 0.1630 0.2323 REMARK 3 20 2.1542 - 2.1177 1.00 2598 141 0.1683 0.2125 REMARK 3 21 2.1177 - 2.0835 1.00 2608 155 0.1754 0.2118 REMARK 3 22 2.0835 - 2.0515 1.00 2620 157 0.1784 0.2237 REMARK 3 23 2.0515 - 2.0213 1.00 2591 147 0.1824 0.2501 REMARK 3 24 2.0213 - 1.9928 1.00 2605 136 0.1800 0.2288 REMARK 3 25 1.9928 - 1.9659 1.00 2628 126 0.1848 0.2189 REMARK 3 26 1.9659 - 1.9404 1.00 2607 142 0.1899 0.2162 REMARK 3 27 1.9404 - 1.9161 1.00 2578 159 0.2031 0.2573 REMARK 3 28 1.9161 - 1.8930 1.00 2618 120 0.2143 0.2873 REMARK 3 29 1.8930 - 1.8710 1.00 2630 143 0.2563 0.3187 REMARK 3 30 1.8710 - 1.8500 1.00 2590 128 0.2453 0.2930 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7434 REMARK 3 ANGLE : 1.132 10067 REMARK 3 CHIRALITY : 0.049 1112 REMARK 3 PLANARITY : 0.006 1283 REMARK 3 DIHEDRAL : 13.767 2760 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 17.7558 3.6768 10.1625 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.1302 REMARK 3 T33: 0.1203 T12: -0.0043 REMARK 3 T13: 0.0081 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.5244 L22: 1.1506 REMARK 3 L33: 0.8774 L12: -0.1838 REMARK 3 L13: 0.0573 L23: 0.3737 REMARK 3 S TENSOR REMARK 3 S11: -0.0846 S12: -0.0337 S13: 0.0531 REMARK 3 S21: -0.0017 S22: 0.0173 S23: 0.0060 REMARK 3 S31: -0.1212 S32: -0.0079 S33: 0.0540 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R5X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000086939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SILICON 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83514 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 46.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 61.20 REMARK 200 R MERGE (I) : 0.35600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 61.30 REMARK 200 R MERGE FOR SHELL (I) : 0.03800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% (V/V) PEG 8000, 10* (V/V) REMARK 280 GLYCEROL, 0.1 M TRIS PH 8.5, 0.2 M MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.72350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.82450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.53300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.82450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.72350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.53300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 182 REMARK 465 ASN A 183 REMARK 465 ASN A 184 REMARK 465 ASN A 185 REMARK 465 ASN A 186 REMARK 465 ASN A 187 REMARK 465 SER A 188 REMARK 465 VAL A 189 REMARK 465 VAL A 190 REMARK 465 VAL A 191 REMARK 465 LYS A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 465 GLU A 195 REMARK 465 PRO A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 ARG A 228 CD NE CZ NH1 NH2 REMARK 470 LYS A 252 CD CE NZ REMARK 470 VAL A 264 CG1 CG2 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 GLU A 348 CG CD OE1 OE2 REMARK 470 LYS A 405 CG CD CE NZ REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 GLU A 409 CD OE1 OE2 REMARK 470 GLN A 423 CG CD OE1 NE2 REMARK 470 LYS A 465 CE NZ REMARK 470 LYS A 480 CE NZ REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 LYS A 608 CG CD CE NZ REMARK 470 LYS A 609 CG CD CE NZ REMARK 470 ASN A 613 CG OD1 ND2 REMARK 470 GLU A 663 CG CD OE1 OE2 REMARK 470 LYS A 682 CG CD CE NZ REMARK 470 GLU A 683 CG CD OE1 OE2 REMARK 470 GLU A 699 CG CD OE1 OE2 REMARK 470 HIS A 815 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 884 CG CD OE1 OE2 REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 GLU A 977 CD OE1 OE2 REMARK 470 LYS A 980 CD CE NZ REMARK 470 ASP A 989 CG OD1 OD2 REMARK 470 LYS A1019 CD CE NZ REMARK 470 LYS A1030 CE NZ REMARK 470 GLN A1066 CD OE1 NE2 REMARK 470 LYS A1075 CE NZ REMARK 470 LYS A1084 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1662 O HOH A 1683 2.03 REMARK 500 OE2 GLU A 463 O HOH A 2031 2.07 REMARK 500 O HOH A 1542 O HOH A 1915 2.12 REMARK 500 O3 GOL A 1103 O HOH A 1560 2.13 REMARK 500 OG SER A 668 O HOH A 1885 2.13 REMARK 500 OE2 GLU A 812 O HOH A 1646 2.14 REMARK 500 OD1 ASN A 1059 O HOH A 1665 2.16 REMARK 500 O HOH A 1236 O HOH A 1599 2.17 REMARK 500 O HOH A 1288 O HOH A 1694 2.17 REMARK 500 O HOH A 1639 O HOH A 1683 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 274 -45.75 -137.11 REMARK 500 SER A 286 -164.91 -129.22 REMARK 500 LYS A 311 -116.77 56.83 REMARK 500 VAL A 459 -144.81 -127.10 REMARK 500 LYS A 465 79.36 29.82 REMARK 500 LEU A 475 -34.93 -133.60 REMARK 500 SER A 549 -73.27 -93.13 REMARK 500 ASP A 634 105.18 -168.69 REMARK 500 PHE A 736 73.90 55.51 REMARK 500 ASP A 974 33.33 -98.50 REMARK 500 VAL A 986 -56.13 -125.77 REMARK 500 LYS A 988 -135.70 51.54 REMARK 500 ASP A 989 30.51 -99.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 250 O REMARK 620 2 HOH A1357 O 84.4 REMARK 620 3 HOH A1400 O 79.8 86.5 REMARK 620 4 HOH A1483 O 159.5 81.4 84.7 REMARK 620 5 HOH A1484 O 85.1 169.5 92.6 109.0 REMARK 620 6 HOH A2034 O 100.8 86.2 172.5 92.9 94.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 496 NE2 REMARK 620 2 HIS A 500 NE2 100.0 REMARK 620 3 GLU A 519 OE1 106.3 108.0 REMARK 620 4 R5X A1107 O15 101.1 151.4 84.3 REMARK 620 5 R5X A1107 O17 96.8 86.9 149.3 71.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5X A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1110 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1111 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1112 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EBG RELATED DB: PDB REMARK 900 UNLIGANDED FORM OF ENZYME REMARK 900 RELATED ID: 4R5T RELATED DB: PDB REMARK 900 RELATED ID: 4R5V RELATED DB: PDB REMARK 900 RELATED ID: 4R6T RELATED DB: PDB REMARK 900 RELATED ID: 4R76 RELATED DB: PDB REMARK 900 RELATED ID: 4R7M RELATED DB: PDB DBREF 4R5X A 182 1084 UNP O96935 AMP1_PLAFQ 182 1084 SEQADV 4R5X GLN A 213 UNP O96935 ASN 213 ENGINEERED MUTATION SEQADV 4R5X GLN A 223 UNP O96935 ASN 223 ENGINEERED MUTATION SEQADV 4R5X PRO A 378 UNP O96935 HIS 378 ENGINEERED MUTATION SEQADV 4R5X GLN A 501 UNP O96935 ASN 501 ENGINEERED MUTATION SEQADV 4R5X GLN A 745 UNP O96935 ASN 745 ENGINEERED MUTATION SEQADV 4R5X GLN A 795 UNP O96935 ASN 795 ENGINEERED MUTATION SEQADV 4R5X GLN A 1069 UNP O96935 ASN 1069 ENGINEERED MUTATION SEQRES 1 A 903 ASN ASN ASN ASN ASN ASN SER VAL VAL VAL LYS LYS ASN SEQRES 2 A 903 GLU PRO LYS ILE HIS TYR ARG LYS ASP TYR LYS PRO SER SEQRES 3 A 903 GLY PHE ILE ILE ASN GLN VAL THR LEU ASN ILE ASN ILE SEQRES 4 A 903 HIS ASP GLN GLU THR ILE VAL ARG SER VAL LEU ASP MET SEQRES 5 A 903 ASP ILE SER LYS HIS ASN VAL GLY GLU ASP LEU VAL PHE SEQRES 6 A 903 ASP GLY VAL GLY LEU LYS ILE ASN GLU ILE SER ILE ASN SEQRES 7 A 903 ASN LYS LYS LEU VAL GLU GLY GLU GLU TYR THR TYR ASP SEQRES 8 A 903 ASN GLU PHE LEU THR ILE PHE SER LYS PHE VAL PRO LYS SEQRES 9 A 903 SER LYS PHE ALA PHE SER SER GLU VAL ILE ILE HIS PRO SEQRES 10 A 903 GLU THR ASN TYR ALA LEU THR GLY LEU TYR LYS SER LYS SEQRES 11 A 903 ASN ILE ILE VAL SER GLN CYS GLU ALA THR GLY PHE ARG SEQRES 12 A 903 ARG ILE THR PHE PHE ILE ASP ARG PRO ASP MET MET ALA SEQRES 13 A 903 LYS TYR ASP VAL THR VAL THR ALA ASP LYS GLU LYS TYR SEQRES 14 A 903 PRO VAL LEU LEU SER ASN GLY ASP LYS VAL ASN GLU PHE SEQRES 15 A 903 GLU ILE PRO GLY GLY ARG HIS GLY ALA ARG PHE ASN ASP SEQRES 16 A 903 PRO PRO LEU LYS PRO CYS TYR LEU PHE ALA VAL VAL ALA SEQRES 17 A 903 GLY ASP LEU LYS HIS LEU SER ALA THR TYR ILE THR LYS SEQRES 18 A 903 TYR THR LYS LYS LYS VAL GLU LEU TYR VAL PHE SER GLU SEQRES 19 A 903 GLU LYS TYR VAL SER LYS LEU GLN TRP ALA LEU GLU CYS SEQRES 20 A 903 LEU LYS LYS SER MET ALA PHE ASP GLU ASP TYR PHE GLY SEQRES 21 A 903 LEU GLU TYR ASP LEU SER ARG LEU ASN LEU VAL ALA VAL SEQRES 22 A 903 SER ASP PHE ASN VAL GLY ALA MET GLU ASN LYS GLY LEU SEQRES 23 A 903 ASN ILE PHE ASN ALA ASN SER LEU LEU ALA SER LYS LYS SEQRES 24 A 903 ASN SER ILE ASP PHE SER TYR ALA ARG ILE LEU THR VAL SEQRES 25 A 903 VAL GLY HIS GLU TYR PHE HIS GLN TYR THR GLY ASN ARG SEQRES 26 A 903 VAL THR LEU ARG ASP TRP PHE GLN LEU THR LEU LYS GLU SEQRES 27 A 903 GLY LEU THR VAL HIS ARG GLU ASN LEU PHE SER GLU GLU SEQRES 28 A 903 MET THR LYS THR VAL THR THR ARG LEU SER HIS VAL ASP SEQRES 29 A 903 LEU LEU ARG SER VAL GLN PHE LEU GLU ASP SER SER PRO SEQRES 30 A 903 LEU SER HIS PRO ILE ARG PRO GLU SER TYR VAL SER MET SEQRES 31 A 903 GLU ASN PHE TYR THR THR THR VAL TYR ASP LYS GLY SER SEQRES 32 A 903 GLU VAL MET ARG MET TYR LEU THR ILE LEU GLY GLU GLU SEQRES 33 A 903 TYR TYR LYS LYS GLY PHE ASP ILE TYR ILE LYS LYS ASN SEQRES 34 A 903 ASP GLY ASN THR ALA THR CYS GLU ASP PHE ASN TYR ALA SEQRES 35 A 903 MET GLU GLN ALA TYR LYS MET LYS LYS ALA ASP ASN SER SEQRES 36 A 903 ALA ASN LEU ASN GLN TYR LEU LEU TRP PHE SER GLN SER SEQRES 37 A 903 GLY THR PRO HIS VAL SER PHE LYS TYR ASN TYR ASP ALA SEQRES 38 A 903 GLU LYS LYS GLN TYR SER ILE HIS VAL ASN GLN TYR THR SEQRES 39 A 903 LYS PRO ASP GLU ASN GLN LYS GLU LYS LYS PRO LEU PHE SEQRES 40 A 903 ILE PRO ILE SER VAL GLY LEU ILE ASN PRO GLU ASN GLY SEQRES 41 A 903 LYS GLU MET ILE SER GLN THR THR LEU GLU LEU THR LYS SEQRES 42 A 903 GLU SER ASP THR PHE VAL PHE ASN ASN ILE ALA VAL LYS SEQRES 43 A 903 PRO ILE PRO SER LEU PHE ARG GLY PHE SER ALA PRO VAL SEQRES 44 A 903 TYR ILE GLU ASP GLN LEU THR ASP GLU GLU ARG ILE LEU SEQRES 45 A 903 LEU LEU LYS TYR ASP SER ASP ALA PHE VAL ARG TYR ASN SEQRES 46 A 903 SER CYS THR ASN ILE TYR MET LYS GLN ILE LEU MET ASN SEQRES 47 A 903 TYR ASN GLU PHE LEU LYS ALA LYS ASN GLU LYS LEU GLU SEQRES 48 A 903 SER PHE GLN LEU THR PRO VAL ASN ALA GLN PHE ILE ASP SEQRES 49 A 903 ALA ILE LYS TYR LEU LEU GLU ASP PRO HIS ALA ASP ALA SEQRES 50 A 903 GLY PHE LYS SER TYR ILE VAL SER LEU PRO GLN ASP ARG SEQRES 51 A 903 TYR ILE ILE ASN PHE VAL SER ASN LEU ASP THR ASP VAL SEQRES 52 A 903 LEU ALA ASP THR LYS GLU TYR ILE TYR LYS GLN ILE GLY SEQRES 53 A 903 ASP LYS LEU ASN ASP VAL TYR TYR LYS MET PHE LYS SER SEQRES 54 A 903 LEU GLU ALA LYS ALA ASP ASP LEU THR TYR PHE ASN ASP SEQRES 55 A 903 GLU SER HIS VAL ASP PHE ASP GLN MET ASN MET ARG THR SEQRES 56 A 903 LEU ARG ASN THR LEU LEU SER LEU LEU SER LYS ALA GLN SEQRES 57 A 903 TYR PRO ASN ILE LEU ASN GLU ILE ILE GLU HIS SER LYS SEQRES 58 A 903 SER PRO TYR PRO SER ASN TRP LEU THR SER LEU SER VAL SEQRES 59 A 903 SER ALA TYR PHE ASP LYS TYR PHE GLU LEU TYR ASP LYS SEQRES 60 A 903 THR TYR LYS LEU SER LYS ASP ASP GLU LEU LEU LEU GLN SEQRES 61 A 903 GLU TRP LEU LYS THR VAL SER ARG SER ASP ARG LYS ASP SEQRES 62 A 903 ILE TYR GLU ILE LEU LYS LYS LEU GLU ASN GLU VAL LEU SEQRES 63 A 903 LYS ASP SER LYS ASN PRO ASN ASP ILE ARG ALA VAL TYR SEQRES 64 A 903 LEU PRO PHE THR ASN ASN LEU ARG ARG PHE HIS ASP ILE SEQRES 65 A 903 SER GLY LYS GLY TYR LYS LEU ILE ALA GLU VAL ILE THR SEQRES 66 A 903 LYS THR ASP LYS PHE ASN PRO MET VAL ALA THR GLN LEU SEQRES 67 A 903 CYS GLU PRO PHE LYS LEU TRP ASN LYS LEU ASP THR LYS SEQRES 68 A 903 ARG GLN GLU LEU MET LEU ASN GLU MET ASN THR MET LEU SEQRES 69 A 903 GLN GLU PRO GLN ILE SER ASN ASN LEU LYS GLU TYR LEU SEQRES 70 A 903 LEU ARG LEU THR ASN LYS HET ZN A1101 1 HET GOL A1102 6 HET GOL A1103 6 HET GOL A1104 6 HET MG A1105 1 HET GOL A1106 6 HET R5X A1107 26 HET DMS A1108 4 HET DMS A1109 4 HET DMS A1110 4 HET DMS A1111 4 HET DMS A1112 4 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM R5X 3-AMINO-N-{(1R)-2-(HYDROXYAMINO)-2-OXO-1-[4-(1H- HETNAM 2 R5X PYRAZOL-1-YL)PHENYL]ETHYL}BENZAMIDE HETNAM DMS DIMETHYL SULFOXIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 4(C3 H8 O3) FORMUL 6 MG MG 2+ FORMUL 8 R5X C18 H17 N5 O3 FORMUL 9 DMS 5(C2 H6 O S) FORMUL 14 HOH *844(H2 O) HELIX 1 1 LYS A 202 TYR A 204 5 3 HELIX 2 2 SER A 280 VAL A 283 5 4 HELIX 3 3 HIS A 297 ASN A 301 5 5 HELIX 4 4 GLY A 322 ILE A 326 5 5 HELIX 5 5 PRO A 381 PHE A 385 5 5 HELIX 6 6 LYS A 417 LYS A 421 5 5 HELIX 7 7 LEU A 422 PHE A 440 1 19 HELIX 8 8 ASN A 473 LEU A 475 5 3 HELIX 9 9 ASP A 484 ASN A 505 1 22 HELIX 10 10 ASP A 511 PHE A 513 5 3 HELIX 11 11 GLN A 514 LYS A 535 1 22 HELIX 12 12 VAL A 537 SER A 557 1 21 HELIX 13 13 SER A 570 TYR A 575 5 6 HELIX 14 14 THR A 576 ASP A 611 1 36 HELIX 15 15 THR A 616 ALA A 633 1 18 HELIX 16 16 ASN A 640 TYR A 642 5 3 HELIX 17 17 LEU A 643 GLN A 648 1 6 HELIX 18 18 THR A 747 ASP A 758 1 12 HELIX 19 19 ASP A 760 GLU A 789 1 30 HELIX 20 20 ASN A 800 GLU A 812 1 13 HELIX 21 21 ASP A 817 VAL A 825 1 9 HELIX 22 22 GLN A 829 ILE A 834 1 6 HELIX 23 23 ASN A 835 VAL A 837 5 3 HELIX 24 24 ASP A 841 LEU A 871 1 31 HELIX 25 25 LEU A 871 ASP A 876 1 6 HELIX 26 26 ASP A 888 ALA A 908 1 21 HELIX 27 27 ASN A 912 SER A 921 1 10 HELIX 28 28 TYR A 925 SER A 936 1 12 HELIX 29 29 ALA A 937 PHE A 939 5 3 HELIX 30 30 LYS A 941 LYS A 954 1 14 HELIX 31 31 ASP A 956 SER A 970 1 15 HELIX 32 32 ASP A 974 VAL A 986 1 13 HELIX 33 33 ASN A 992 ASN A 1005 1 14 HELIX 34 34 ASN A 1006 HIS A 1011 1 6 HELIX 35 35 GLY A 1015 LYS A 1030 1 16 HELIX 36 36 ASN A 1032 LEU A 1039 1 8 HELIX 37 37 CYS A 1040 LEU A 1049 5 10 HELIX 38 38 ASP A 1050 GLN A 1066 1 17 HELIX 39 39 SER A 1071 THR A 1082 1 12 SHEET 1 A 2 HIS A 199 TYR A 200 0 SHEET 2 A 2 SER A 567 TYR A 568 -1 O TYR A 568 N HIS A 199 SHEET 1 B 8 LYS A 261 LYS A 262 0 SHEET 2 B 8 LYS A 252 ILE A 258 -1 N ILE A 258 O LYS A 261 SHEET 3 B 8 PHE A 288 ILE A 296 -1 O GLU A 293 N ASN A 254 SHEET 4 B 8 THR A 225 ILE A 235 -1 N LEU A 231 O PHE A 290 SHEET 5 B 8 PHE A 209 ILE A 220 -1 N ASN A 219 O ILE A 226 SHEET 6 B 8 ALA A 337 ASP A 346 1 O THR A 342 N ILE A 218 SHEET 7 B 8 ARG A 369 LYS A 380 -1 O PHE A 374 N VAL A 341 SHEET 8 B 8 ASP A 358 ILE A 365 -1 N VAL A 360 O ARG A 373 SHEET 1 C 3 LEU A 244 ASP A 247 0 SHEET 2 C 3 PHE A 275 ILE A 278 -1 O LEU A 276 N PHE A 246 SHEET 3 C 3 TYR A 269 TYR A 271 -1 N THR A 270 O THR A 277 SHEET 1 D 4 GLY A 306 SER A 310 0 SHEET 2 D 4 ILE A 313 GLN A 317 -1 O ILE A 313 N SER A 310 SHEET 3 D 4 VAL A 387 GLY A 390 -1 O ALA A 389 N ILE A 314 SHEET 4 D 4 VAL A 352 SER A 355 -1 N LEU A 354 O VAL A 388 SHEET 1 E 5 LEU A 392 ILE A 400 0 SHEET 2 E 5 LYS A 407 GLU A 415 -1 O VAL A 408 N TYR A 399 SHEET 3 E 5 ARG A 448 VAL A 454 1 O LEU A 451 N PHE A 413 SHEET 4 E 5 LEU A 467 ASN A 471 1 O PHE A 470 N VAL A 452 SHEET 5 E 5 ALA A 461 MET A 462 -1 N MET A 462 O ILE A 469 SHEET 1 F 1 VAL A 507 LEU A 509 0 SHEET 1 G 4 SER A 716 PHE A 721 0 SHEET 2 G 4 GLN A 666 TYR A 674 -1 N TYR A 667 O PHE A 721 SHEET 3 G 4 HIS A 653 ASP A 661 -1 N LYS A 657 O HIS A 670 SHEET 4 G 4 TYR A 741 GLU A 743 1 O TYR A 741 N VAL A 654 SHEET 1 H 3 THR A 708 LEU A 712 0 SHEET 2 H 3 ILE A 689 ILE A 696 -1 N ILE A 691 O LEU A 710 SHEET 3 H 3 ILE A 729 LEU A 732 -1 O ILE A 729 N ILE A 696 LINK O GLY A 250 MG MG A1105 1555 1555 2.10 LINK NE2 HIS A 496 ZN ZN A1101 1555 1555 2.11 LINK NE2 HIS A 500 ZN ZN A1101 1555 1555 1.99 LINK OE1 GLU A 519 ZN ZN A1101 1555 1555 2.03 LINK ZN ZN A1101 O15 R5X A1107 1555 1555 2.04 LINK ZN ZN A1101 O17 R5X A1107 1555 1555 2.39 LINK MG MG A1105 O HOH A1357 1555 1555 2.33 LINK MG MG A1105 O HOH A1400 1555 1555 2.34 LINK MG MG A1105 O HOH A1483 1555 1555 2.20 LINK MG MG A1105 O HOH A1484 1555 1555 2.27 LINK MG MG A1105 O HOH A2034 1555 1555 2.08 CISPEP 1 GLU A 319 ALA A 320 0 -1.10 SITE 1 AC1 4 HIS A 496 HIS A 500 GLU A 519 R5X A1107 SITE 1 AC2 8 VAL A 459 ASN A 471 ASN A 473 SER A 474 SITE 2 AC2 8 ARG A 489 ARG A 997 HOH A1201 HOH A1692 SITE 1 AC3 9 MET A 533 THR A 534 VAL A 887 ASP A 888 SITE 2 AC3 9 PHE A 889 ASP A 890 DMS A1112 HOH A1560 SITE 3 AC3 9 HOH A1947 SITE 1 AC4 6 TYR A 575 THR A 576 THR A 577 TYR A 580 SITE 2 AC4 6 ASP A 581 R5X A1107 SITE 1 AC5 6 GLY A 250 HOH A1357 HOH A1400 HOH A1483 SITE 2 AC5 6 HOH A1484 HOH A2034 SITE 1 AC6 9 LYS A 479 TYR A 880 VAL A 887 ASP A 888 SITE 2 AC6 9 GLN A 891 ARG A 895 TYR A 925 HOH A1210 SITE 3 AC6 9 HOH A1280 SITE 1 AC7 21 GLU A 319 VAL A 459 GLY A 460 ALA A 461 SITE 2 AC7 21 MET A 462 GLU A 463 ARG A 489 HIS A 496 SITE 3 AC7 21 GLU A 497 HIS A 500 GLU A 519 TYR A 575 SITE 4 AC7 21 TYR A 580 MET A1034 ZN A1101 GOL A1104 SITE 5 AC7 21 HOH A1601 HOH A1692 HOH A1775 HOH A2029 SITE 6 AC7 21 HOH A2032 SITE 1 AC8 4 ASN A 573 THR A1037 TYR A1077 HOH A1335 SITE 1 AC9 6 TYR A 853 SER A 903 LYS A 907 DMS A1110 SITE 2 AC9 6 HOH A1315 HOH A1362 SITE 1 BC1 5 VAL A 825 SER A 826 TYR A 853 SER A 903 SITE 2 BC1 5 DMS A1109 SITE 1 BC2 4 VAL A 245 ASP A 247 PHE A 275 HOH A1766 SITE 1 BC3 4 HIS A 886 VAL A 887 ASP A 888 GOL A1103 CRYST1 75.447 109.066 117.649 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013254 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008500 0.00000