HEADER TRANSFERASE 26-AUG-14 4R6W TITLE PLASMODIUM FALCIPARUM PHOSPHOETHANOLAMINE METHYLTRANSFERASE D128A TITLE 2 MUTANT IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE AND PHOSPHOCHOLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOETHANOLAMINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: PMT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.LEE,J.M.JEZ REVDAT 4 20-SEP-23 4R6W 1 REMARK SEQADV REVDAT 3 24-DEC-14 4R6W 1 JRNL REVDAT 2 22-OCT-14 4R6W 1 JRNL REVDAT 1 08-OCT-14 4R6W 0 JRNL AUTH S.SAEN-OON,S.G.LEE,J.M.JEZ,V.GUALLAR JRNL TITL AN ALTERNATIVE MECHANISM FOR THE METHYLATION OF JRNL TITL 2 PHOSPHOETHANOLAMINE CATALYZED BY PLASMODIUM FALCIPARUM JRNL TITL 3 PHOSPHOETHANOLAMINE METHYLTRANSFERASE. JRNL REF J.BIOL.CHEM. V. 289 33815 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25288796 JRNL DOI 10.1074/JBC.M114.611319 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 76287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 3749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3996 - 4.7622 0.98 2824 143 0.1688 0.1786 REMARK 3 2 4.7622 - 3.7822 0.99 2750 142 0.1261 0.1231 REMARK 3 3 3.7822 - 3.3048 1.00 2717 144 0.1361 0.1609 REMARK 3 4 3.3048 - 3.0029 0.99 2716 145 0.1530 0.2051 REMARK 3 5 3.0029 - 2.7878 0.99 2695 162 0.1660 0.1933 REMARK 3 6 2.7878 - 2.6236 0.99 2726 128 0.1621 0.2004 REMARK 3 7 2.6236 - 2.4922 1.00 2724 135 0.1656 0.2022 REMARK 3 8 2.4922 - 2.3838 1.00 2715 143 0.1563 0.2136 REMARK 3 9 2.3838 - 2.2921 1.00 2697 135 0.1563 0.2045 REMARK 3 10 2.2921 - 2.2130 1.00 2687 143 0.1542 0.1889 REMARK 3 11 2.2130 - 2.1438 1.00 2708 160 0.1505 0.1843 REMARK 3 12 2.1438 - 2.0825 1.00 2725 113 0.1523 0.1908 REMARK 3 13 2.0825 - 2.0277 1.00 2696 131 0.1565 0.1977 REMARK 3 14 2.0277 - 1.9783 1.00 2710 142 0.1629 0.1830 REMARK 3 15 1.9783 - 1.9333 1.00 2686 158 0.1634 0.1922 REMARK 3 16 1.9333 - 1.8922 1.00 2694 144 0.1721 0.1902 REMARK 3 17 1.8922 - 1.8543 1.00 2703 121 0.1722 0.1872 REMARK 3 18 1.8543 - 1.8193 1.00 2703 139 0.1839 0.2144 REMARK 3 19 1.8193 - 1.7868 1.00 2714 141 0.1889 0.2418 REMARK 3 20 1.7868 - 1.7566 1.00 2717 116 0.1935 0.2110 REMARK 3 21 1.7566 - 1.7282 1.00 2717 147 0.1893 0.2183 REMARK 3 22 1.7282 - 1.7016 1.00 2661 137 0.1951 0.2362 REMARK 3 23 1.7016 - 1.6766 1.00 2681 118 0.1940 0.2200 REMARK 3 24 1.6766 - 1.6530 1.00 2717 147 0.2009 0.2597 REMARK 3 25 1.6530 - 1.6307 1.00 2620 145 0.2099 0.2577 REMARK 3 26 1.6307 - 1.6095 1.00 2707 148 0.2155 0.2390 REMARK 3 27 1.6095 - 1.5894 0.79 2128 122 0.2185 0.2348 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4487 REMARK 3 ANGLE : 1.026 6066 REMARK 3 CHIRALITY : 0.044 647 REMARK 3 PLANARITY : 0.004 763 REMARK 3 DIHEDRAL : 17.506 1749 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9819 11.5134 26.1266 REMARK 3 T TENSOR REMARK 3 T11: 0.1452 T22: 0.1234 REMARK 3 T33: 0.1952 T12: 0.0107 REMARK 3 T13: 0.0107 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 2.2588 L22: 3.4908 REMARK 3 L33: 9.3785 L12: 0.7546 REMARK 3 L13: -0.1310 L23: 3.2141 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: -0.0762 S13: 0.2381 REMARK 3 S21: 0.1327 S22: -0.0259 S23: 0.2714 REMARK 3 S31: 0.0260 S32: -0.2683 S33: 0.0124 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6157 -8.4165 24.3547 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.1686 REMARK 3 T33: 0.1738 T12: -0.0026 REMARK 3 T13: -0.0123 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.1286 L22: 2.7040 REMARK 3 L33: 0.9579 L12: 0.2459 REMARK 3 L13: 0.1074 L23: -0.1504 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.1567 S13: -0.0469 REMARK 3 S21: -0.1049 S22: 0.0119 S23: 0.0891 REMARK 3 S31: 0.0373 S32: -0.0384 S33: -0.0290 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5210 -1.4532 29.7624 REMARK 3 T TENSOR REMARK 3 T11: 0.1407 T22: 0.2227 REMARK 3 T33: 0.2397 T12: 0.0179 REMARK 3 T13: 0.0296 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 2.1946 L22: 4.8964 REMARK 3 L33: 1.6910 L12: 2.1866 REMARK 3 L13: 0.4777 L23: 1.1380 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.1521 S13: 0.0822 REMARK 3 S21: -0.0462 S22: 0.1074 S23: 0.4134 REMARK 3 S31: -0.0349 S32: -0.0286 S33: -0.1325 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9592 -4.7927 35.4528 REMARK 3 T TENSOR REMARK 3 T11: 0.1561 T22: 0.1458 REMARK 3 T33: 0.1361 T12: 0.0006 REMARK 3 T13: -0.0018 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.3603 L22: 2.2750 REMARK 3 L33: 0.9582 L12: 0.5772 REMARK 3 L13: -0.3658 L23: -0.7404 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: -0.1041 S13: -0.0077 REMARK 3 S21: 0.1141 S22: -0.0214 S23: -0.0339 REMARK 3 S31: -0.0346 S32: 0.0163 S33: -0.0273 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1600 14.8935 24.3059 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1248 REMARK 3 T33: 0.1671 T12: -0.0147 REMARK 3 T13: 0.0106 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.6663 L22: 3.4393 REMARK 3 L33: 4.0159 L12: 1.4278 REMARK 3 L13: -2.5189 L23: 0.7201 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.1484 S13: 0.3988 REMARK 3 S21: -0.0413 S22: 0.0323 S23: -0.1197 REMARK 3 S31: -0.1253 S32: 0.1851 S33: -0.0808 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0148 -3.3328 29.5253 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.1519 REMARK 3 T33: 0.1336 T12: 0.0073 REMARK 3 T13: -0.0014 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.8356 L22: 2.1553 REMARK 3 L33: 0.7766 L12: -0.3864 REMARK 3 L13: -0.1530 L23: -0.3816 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: -0.0636 S13: 0.0286 REMARK 3 S21: 0.0516 S22: -0.0326 S23: -0.1564 REMARK 3 S31: 0.0351 S32: 0.0422 S33: 0.0499 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7767 8.5715 9.1603 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.1738 REMARK 3 T33: 0.1348 T12: -0.0115 REMARK 3 T13: -0.0132 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 4.3313 L22: 3.9258 REMARK 3 L33: 1.8398 L12: -2.8502 REMARK 3 L13: -0.1317 L23: 0.0219 REMARK 3 S TENSOR REMARK 3 S11: 0.2799 S12: 0.5459 S13: 0.0334 REMARK 3 S21: -0.4253 S22: -0.2614 S23: 0.1562 REMARK 3 S31: 0.0226 S32: -0.1135 S33: 0.0073 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3948 14.5484 13.2467 REMARK 3 T TENSOR REMARK 3 T11: 0.1867 T22: 0.1693 REMARK 3 T33: 0.1546 T12: -0.0180 REMARK 3 T13: -0.0113 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 7.5356 L22: 5.0195 REMARK 3 L33: 1.4133 L12: -4.4240 REMARK 3 L13: 0.0308 L23: 0.3870 REMARK 3 S TENSOR REMARK 3 S11: 0.0643 S12: 0.2753 S13: 0.4580 REMARK 3 S21: -0.2568 S22: -0.1170 S23: -0.1435 REMARK 3 S31: -0.1313 S32: 0.0566 S33: 0.0329 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0263 -2.6012 23.4838 REMARK 3 T TENSOR REMARK 3 T11: 0.1186 T22: 0.1327 REMARK 3 T33: 0.1325 T12: 0.0121 REMARK 3 T13: 0.0223 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.1301 L22: 6.4520 REMARK 3 L33: 2.6694 L12: 1.7916 REMARK 3 L13: -1.0495 L23: -3.4418 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: -0.0540 S13: -0.1060 REMARK 3 S21: -0.2000 S22: -0.0774 S23: -0.1505 REMARK 3 S31: 0.1260 S32: 0.1137 S33: 0.1242 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.9817 33.3069 17.7581 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.1627 REMARK 3 T33: 0.1975 T12: -0.0163 REMARK 3 T13: 0.0203 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 1.3678 L22: 3.1148 REMARK 3 L33: 3.1358 L12: -0.4185 REMARK 3 L13: 0.0688 L23: -3.0368 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: 0.0574 S13: 0.2087 REMARK 3 S21: -0.1697 S22: 0.0161 S23: -0.2331 REMARK 3 S31: 0.0509 S32: 0.1665 S33: -0.0663 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.3303 13.6461 21.0337 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.1850 REMARK 3 T33: 0.1871 T12: 0.0209 REMARK 3 T13: -0.0165 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.0637 L22: 3.1563 REMARK 3 L33: 1.5518 L12: 0.2069 REMARK 3 L13: -0.0423 L23: 0.5764 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: -0.1732 S13: -0.0485 REMARK 3 S21: 0.1938 S22: 0.0220 S23: -0.0717 REMARK 3 S31: 0.0881 S32: -0.0147 S33: -0.0415 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 68 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.9793 17.4007 16.3608 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.2129 REMARK 3 T33: 0.2414 T12: 0.0018 REMARK 3 T13: 0.0150 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.6252 L22: 4.0699 REMARK 3 L33: 1.4490 L12: 0.3379 REMARK 3 L13: -0.2594 L23: -1.4614 REMARK 3 S TENSOR REMARK 3 S11: 0.0793 S12: -0.1168 S13: 0.0306 REMARK 3 S21: -0.0165 S22: -0.1101 S23: -0.3403 REMARK 3 S31: -0.0187 S32: 0.2576 S33: -0.0071 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9350 16.6561 8.9182 REMARK 3 T TENSOR REMARK 3 T11: 0.1691 T22: 0.1471 REMARK 3 T33: 0.1410 T12: -0.0076 REMARK 3 T13: 0.0133 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.7718 L22: 1.6332 REMARK 3 L33: 0.7174 L12: -0.2181 REMARK 3 L13: -0.0645 L23: 0.2023 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: 0.1257 S13: -0.0720 REMARK 3 S21: -0.1417 S22: 0.0130 S23: -0.0462 REMARK 3 S31: -0.0311 S32: 0.0596 S33: -0.0081 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 163 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6864 36.8667 18.0111 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1339 REMARK 3 T33: 0.1780 T12: 0.0310 REMARK 3 T13: 0.0003 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.6113 L22: 2.6909 REMARK 3 L33: 3.1671 L12: -0.9977 REMARK 3 L13: -2.0336 L23: -1.1070 REMARK 3 S TENSOR REMARK 3 S11: -0.0676 S12: 0.2120 S13: 0.4525 REMARK 3 S21: -0.0468 S22: 0.0289 S23: 0.1069 REMARK 3 S31: -0.1892 S32: -0.1976 S33: 0.0034 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 180 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1219 18.6210 13.0172 REMARK 3 T TENSOR REMARK 3 T11: 0.1481 T22: 0.1682 REMARK 3 T33: 0.1441 T12: -0.0064 REMARK 3 T13: -0.0086 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.3610 L22: 2.6140 REMARK 3 L33: 0.9725 L12: 0.3116 REMARK 3 L13: -0.1982 L23: 0.1141 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: 0.0963 S13: 0.0084 REMARK 3 S21: -0.1130 S22: -0.0753 S23: 0.2590 REMARK 3 S31: 0.0226 S32: -0.0490 S33: 0.0144 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1008 30.5916 34.2007 REMARK 3 T TENSOR REMARK 3 T11: 0.1895 T22: 0.1831 REMARK 3 T33: 0.1404 T12: 0.0355 REMARK 3 T13: -0.0134 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 4.5088 L22: 3.8552 REMARK 3 L33: 2.0450 L12: 2.7244 REMARK 3 L13: -0.3696 L23: 0.0930 REMARK 3 S TENSOR REMARK 3 S11: 0.1241 S12: -0.4080 S13: -0.0181 REMARK 3 S21: 0.3634 S22: -0.1056 S23: -0.1586 REMARK 3 S31: 0.0332 S32: 0.1471 S33: -0.0151 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7537 36.5075 29.8237 REMARK 3 T TENSOR REMARK 3 T11: 0.1980 T22: 0.1647 REMARK 3 T33: 0.1454 T12: 0.0212 REMARK 3 T13: 0.0024 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 7.7204 L22: 3.5982 REMARK 3 L33: 1.5709 L12: 3.1848 REMARK 3 L13: 0.3586 L23: 0.0208 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.1212 S13: 0.4306 REMARK 3 S21: 0.1500 S22: -0.0980 S23: 0.1961 REMARK 3 S31: -0.1709 S32: -0.0604 S33: 0.0199 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 253 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4778 19.7444 19.2220 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.1463 REMARK 3 T33: 0.1379 T12: -0.0037 REMARK 3 T13: 0.0176 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.5813 L22: 7.7462 REMARK 3 L33: 3.3582 L12: -1.9285 REMARK 3 L13: -1.0681 L23: 3.7462 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.0800 S13: -0.0500 REMARK 3 S21: 0.1728 S22: -0.1000 S23: 0.1330 REMARK 3 S31: 0.0965 S32: -0.1921 S33: 0.1085 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000086974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.589 REMARK 200 RESOLUTION RANGE LOW (A) : 30.394 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3UJ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-8000, 0.1 M SODIUM CACODYLATE, REMARK 280 PH 6.5, 0.2 M SODIUM ACETATE, 20 MM TRIS(2-CARBOXYETHYL) REMARK 280 PHOSPHINE, 5 MM SAH, AND 5 MM PCHO, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 608 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 637 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 670 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 734 O HOH B 699 1455 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 -90.61 -133.02 REMARK 500 PHE A 232 -124.71 -127.20 REMARK 500 ASN B 17 -95.06 -133.03 REMARK 500 PHE B 232 -126.44 -130.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PC A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PC B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UJ6 RELATED DB: PDB REMARK 900 RELATED ID: 3UJ7 RELATED DB: PDB REMARK 900 RELATED ID: 3UJ8 RELATED DB: PDB REMARK 900 RELATED ID: 3UJ9 RELATED DB: PDB REMARK 900 RELATED ID: 3UJA RELATED DB: PDB REMARK 900 RELATED ID: 3UJB RELATED DB: PDB REMARK 900 RELATED ID: 4R6X RELATED DB: PDB DBREF 4R6W A 9 266 UNP Q6T755 Q6T755_PLAFA 9 266 DBREF 4R6W B 9 266 UNP Q6T755 Q6T755_PLAFA 9 266 SEQADV 4R6W ALA A 128 UNP Q6T755 ASP 128 ENGINEERED MUTATION SEQADV 4R6W ALA B 128 UNP Q6T755 ASP 128 ENGINEERED MUTATION SEQRES 1 A 258 SER ASP LYS THR PHE LEU GLU ASN ASN GLN TYR THR ASP SEQRES 2 A 258 GLU GLY VAL LYS VAL TYR GLU PHE ILE PHE GLY GLU ASN SEQRES 3 A 258 TYR ILE SER SER GLY GLY LEU GLU ALA THR LYS LYS ILE SEQRES 4 A 258 LEU SER ASP ILE GLU LEU ASN GLU ASN SER LYS VAL LEU SEQRES 5 A 258 ASP ILE GLY SER GLY LEU GLY GLY GLY CYS MET TYR ILE SEQRES 6 A 258 ASN GLU LYS TYR GLY ALA HIS THR HIS GLY ILE ASP ILE SEQRES 7 A 258 CYS SER ASN ILE VAL ASN MET ALA ASN GLU ARG VAL SER SEQRES 8 A 258 GLY ASN ASN LYS ILE ILE PHE GLU ALA ASN ASP ILE LEU SEQRES 9 A 258 THR LYS GLU PHE PRO GLU ASN ASN PHE ASP LEU ILE TYR SEQRES 10 A 258 SER ARG ALA ALA ILE LEU HIS LEU SER LEU GLU ASN LYS SEQRES 11 A 258 ASN LYS LEU PHE GLN LYS CYS TYR LYS TRP LEU LYS PRO SEQRES 12 A 258 THR GLY THR LEU LEU ILE THR ASP TYR CYS ALA THR GLU SEQRES 13 A 258 LYS GLU ASN TRP ASP ASP GLU PHE LYS GLU TYR VAL LYS SEQRES 14 A 258 GLN ARG LYS TYR THR LEU ILE THR VAL GLU GLU TYR ALA SEQRES 15 A 258 ASP ILE LEU THR ALA CYS ASN PHE LYS ASN VAL VAL SER SEQRES 16 A 258 LYS ASP LEU SER ASP TYR TRP ASN GLN LEU LEU GLU VAL SEQRES 17 A 258 GLU HIS LYS TYR LEU HIS GLU ASN LYS GLU GLU PHE LEU SEQRES 18 A 258 LYS LEU PHE SER GLU LYS LYS PHE ILE SER LEU ASP ASP SEQRES 19 A 258 GLY TRP SER ARG LYS ILE LYS ASP SER LYS ARG LYS MET SEQRES 20 A 258 GLN ARG TRP GLY TYR PHE LYS ALA THR LYS ASN SEQRES 1 B 258 SER ASP LYS THR PHE LEU GLU ASN ASN GLN TYR THR ASP SEQRES 2 B 258 GLU GLY VAL LYS VAL TYR GLU PHE ILE PHE GLY GLU ASN SEQRES 3 B 258 TYR ILE SER SER GLY GLY LEU GLU ALA THR LYS LYS ILE SEQRES 4 B 258 LEU SER ASP ILE GLU LEU ASN GLU ASN SER LYS VAL LEU SEQRES 5 B 258 ASP ILE GLY SER GLY LEU GLY GLY GLY CYS MET TYR ILE SEQRES 6 B 258 ASN GLU LYS TYR GLY ALA HIS THR HIS GLY ILE ASP ILE SEQRES 7 B 258 CYS SER ASN ILE VAL ASN MET ALA ASN GLU ARG VAL SER SEQRES 8 B 258 GLY ASN ASN LYS ILE ILE PHE GLU ALA ASN ASP ILE LEU SEQRES 9 B 258 THR LYS GLU PHE PRO GLU ASN ASN PHE ASP LEU ILE TYR SEQRES 10 B 258 SER ARG ALA ALA ILE LEU HIS LEU SER LEU GLU ASN LYS SEQRES 11 B 258 ASN LYS LEU PHE GLN LYS CYS TYR LYS TRP LEU LYS PRO SEQRES 12 B 258 THR GLY THR LEU LEU ILE THR ASP TYR CYS ALA THR GLU SEQRES 13 B 258 LYS GLU ASN TRP ASP ASP GLU PHE LYS GLU TYR VAL LYS SEQRES 14 B 258 GLN ARG LYS TYR THR LEU ILE THR VAL GLU GLU TYR ALA SEQRES 15 B 258 ASP ILE LEU THR ALA CYS ASN PHE LYS ASN VAL VAL SER SEQRES 16 B 258 LYS ASP LEU SER ASP TYR TRP ASN GLN LEU LEU GLU VAL SEQRES 17 B 258 GLU HIS LYS TYR LEU HIS GLU ASN LYS GLU GLU PHE LEU SEQRES 18 B 258 LYS LEU PHE SER GLU LYS LYS PHE ILE SER LEU ASP ASP SEQRES 19 B 258 GLY TRP SER ARG LYS ILE LYS ASP SER LYS ARG LYS MET SEQRES 20 B 258 GLN ARG TRP GLY TYR PHE LYS ALA THR LYS ASN HET PC A 301 11 HET SAH A 302 26 HET PC B 301 11 HET SAH B 302 26 HETNAM PC PHOSPHOCHOLINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 PC 2(C5 H15 N O4 P 1+) FORMUL 4 SAH 2(C14 H20 N6 O5 S) FORMUL 7 HOH *694(H2 O) HELIX 1 1 SER A 9 ASN A 17 1 9 HELIX 2 2 THR A 20 GLY A 32 1 13 HELIX 3 3 GLY A 39 LEU A 48 1 10 HELIX 4 4 GLY A 67 GLY A 78 1 12 HELIX 5 5 CYS A 87 GLU A 96 1 10 HELIX 6 6 ALA A 129 LEU A 133 5 5 HELIX 7 7 SER A 134 TRP A 148 1 15 HELIX 8 8 GLU A 164 TRP A 168 5 5 HELIX 9 9 ASP A 169 LYS A 180 1 12 HELIX 10 10 THR A 185 CYS A 196 1 12 HELIX 11 11 LEU A 206 ASN A 224 1 19 HELIX 12 12 ASN A 224 PHE A 232 1 9 HELIX 13 13 SER A 233 ARG A 253 1 21 HELIX 14 14 ASP B 10 ASN B 17 1 8 HELIX 15 15 THR B 20 GLY B 32 1 13 HELIX 16 16 GLY B 39 LEU B 48 1 10 HELIX 17 17 GLY B 67 GLY B 78 1 12 HELIX 18 18 CYS B 87 GLU B 96 1 10 HELIX 19 19 ALA B 129 LEU B 133 5 5 HELIX 20 20 SER B 134 TRP B 148 1 15 HELIX 21 21 GLU B 164 TRP B 168 5 5 HELIX 22 22 ASP B 169 LYS B 180 1 12 HELIX 23 23 THR B 185 CYS B 196 1 12 HELIX 24 24 LEU B 206 ASN B 224 1 19 HELIX 25 25 ASN B 224 PHE B 232 1 9 HELIX 26 26 SER B 233 ARG B 253 1 21 SHEET 1 A 7 ILE A 104 ALA A 108 0 SHEET 2 A 7 HIS A 80 ASP A 85 1 N GLY A 83 O ILE A 105 SHEET 3 A 7 LYS A 58 ILE A 62 1 N VAL A 59 O HIS A 80 SHEET 4 A 7 PHE A 121 ARG A 127 1 O TYR A 125 N LEU A 60 SHEET 5 A 7 LEU A 149 ALA A 162 1 O LYS A 150 N PHE A 121 SHEET 6 A 7 GLN A 256 THR A 264 -1 O PHE A 261 N ILE A 157 SHEET 7 A 7 LYS A 199 ASP A 205 -1 N LYS A 199 O THR A 264 SHEET 1 B 7 ILE B 104 ALA B 108 0 SHEET 2 B 7 HIS B 80 ASP B 85 1 N GLY B 83 O ILE B 105 SHEET 3 B 7 LYS B 58 ILE B 62 1 N ASP B 61 O HIS B 82 SHEET 4 B 7 PHE B 121 ARG B 127 1 O TYR B 125 N LEU B 60 SHEET 5 B 7 LEU B 149 ALA B 162 1 O LYS B 150 N PHE B 121 SHEET 6 B 7 GLN B 256 THR B 264 -1 O ALA B 263 N LEU B 155 SHEET 7 B 7 LYS B 199 ASP B 205 -1 N LYS B 199 O THR B 264 SITE 1 AC1 12 GLN A 18 TYR A 19 TYR A 27 ILE A 36 SITE 2 AC1 12 ALA A 128 TYR A 160 TYR A 175 ARG A 179 SITE 3 AC1 12 TYR A 181 LYS A 247 SAH A 302 HOH A 437 SITE 1 AC2 22 TYR A 19 ILE A 36 SER A 37 GLY A 63 SITE 2 AC2 22 GLY A 65 ASP A 85 ILE A 86 CYS A 87 SITE 3 AC2 22 ILE A 90 ASN A 109 ASP A 110 ILE A 111 SITE 4 AC2 22 ARG A 127 ALA A 128 ALA A 129 HIS A 132 SITE 5 AC2 22 PC A 301 HOH A 408 HOH A 443 HOH A 469 SITE 6 AC2 22 HOH A 471 HOH A 577 SITE 1 AC3 12 GLN B 18 TYR B 19 TYR B 27 ILE B 36 SITE 2 AC3 12 ALA B 128 TYR B 160 TYR B 175 ARG B 179 SITE 3 AC3 12 TYR B 181 LYS B 247 SAH B 302 HOH B 409 SITE 1 AC4 20 TYR B 19 ILE B 36 SER B 37 GLY B 63 SITE 2 AC4 20 GLY B 65 ASP B 85 ILE B 86 CYS B 87 SITE 3 AC4 20 ASN B 109 ASP B 110 ILE B 111 ARG B 127 SITE 4 AC4 20 ALA B 128 ALA B 129 PC B 301 HOH B 420 SITE 5 AC4 20 HOH B 448 HOH B 464 HOH B 485 HOH B 629 CRYST1 77.171 44.062 89.147 90.00 108.09 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012958 0.000000 0.004233 0.00000 SCALE2 0.000000 0.022695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011801 0.00000