HEADER TRANSFERASE 01-SEP-14 4R8D TITLE CRYSTAL STRUCTURE OF RV1600 ENCODED AMINOTRANSFERASE IN COMPLEX WITH TITLE 2 PLP-MES FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINOL-PHOSPHATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IMIDAZOLE ACETOL-PHOSPHATE TRANSAMINASE; COMPND 5 EC: 2.6.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: HISC, P425_01659, RVBD_1600; SOURCE 6 EXPRESSION_SYSTEM: MYCOBACTERIUM SMEGMATIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1772; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: MC24517; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PYUB1062 KEYWDS HISTIDINOL PHOSPHATE AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.NASIR,A.ANANT,R.VYAS,B.K.BISWAL REVDAT 2 08-NOV-23 4R8D 1 REMARK SEQADV LINK REVDAT 1 02-SEP-15 4R8D 0 JRNL AUTH N.NASIR,A.ANANT,R.VYAS,B.K.BISWAL JRNL TITL CRYSTAL STRUCTURE OF RV1600 ENCODED AMINOTRANSFERASE IN JRNL TITL 2 COMPLEX WITH PLP-MES FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 45103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2421 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2245 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5538 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.961 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5731 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5469 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7838 ; 1.300 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12531 ; 0.766 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 734 ; 5.649 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;31.342 ;23.128 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 848 ;14.738 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;18.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 912 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6522 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1268 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ DW REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47586 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 40.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CQ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M MES REMARK 280 MONOHYDRATE, 30% PEG MME 5000, 50 MICRO-MOLAR PLP, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.76250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.47350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.76150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.47350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.76250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.76150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 ARG A 374 REMARK 465 SER A 375 REMARK 465 PRO A 376 REMARK 465 VAL A 377 REMARK 465 GLY A 378 REMARK 465 ALA A 379 REMARK 465 PRO A 380 REMARK 465 LYS A 381 REMARK 465 LEU A 382 REMARK 465 ALA A 383 REMARK 465 ALA A 384 REMARK 465 ALA A 385 REMARK 465 LEU A 386 REMARK 465 GLU A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ARG B 3 REMARK 465 SER B 4 REMARK 465 GLY B 5 REMARK 465 HIS B 6 REMARK 465 VAL B 372 REMARK 465 THR B 373 REMARK 465 ARG B 374 REMARK 465 SER B 375 REMARK 465 PRO B 376 REMARK 465 VAL B 377 REMARK 465 GLY B 378 REMARK 465 ALA B 379 REMARK 465 PRO B 380 REMARK 465 LYS B 381 REMARK 465 LEU B 382 REMARK 465 ALA B 383 REMARK 465 ALA B 384 REMARK 465 ALA B 385 REMARK 465 LEU B 386 REMARK 465 GLU B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 44.76 -78.70 REMARK 500 LEU A 30 111.87 -164.53 REMARK 500 ASN A 39 43.45 -77.21 REMARK 500 SER A 126 -154.47 -140.31 REMARK 500 PHE A 150 -7.24 73.92 REMARK 500 GLU A 202 41.88 -107.11 REMARK 500 LYS A 223 -42.02 -131.31 REMARK 500 LYS A 232 -83.60 -113.09 REMARK 500 ARG A 240 76.56 55.96 REMARK 500 ALA A 311 -153.30 -118.29 REMARK 500 PRO B 14 47.31 -82.44 REMARK 500 ASN B 39 43.85 -83.64 REMARK 500 GLU B 94 -42.14 -25.68 REMARK 500 SER B 126 -157.49 -146.92 REMARK 500 PHE B 150 -5.61 71.69 REMARK 500 LYS B 232 -94.51 -111.86 REMARK 500 ARG B 240 76.21 50.57 REMARK 500 ALA B 311 -151.12 -133.25 REMARK 500 ILE B 336 -163.39 -111.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 DBREF 4R8D A 1 380 UNP I6XYD8 I6XYD8_MYCTU 1 380 DBREF 4R8D B 1 380 UNP I6XYD8 I6XYD8_MYCTU 1 380 SEQADV 4R8D MET A 0 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D LYS A 381 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D LEU A 382 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D ALA A 383 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D ALA A 384 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D ALA A 385 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D LEU A 386 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D GLU A 387 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS A 388 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS A 389 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS A 390 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS A 391 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS A 392 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS A 393 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D MET B 0 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D LYS B 381 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D LEU B 382 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D ALA B 383 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D ALA B 384 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D ALA B 385 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D LEU B 386 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D GLU B 387 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS B 388 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS B 389 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS B 390 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS B 391 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS B 392 UNP I6XYD8 EXPRESSION TAG SEQADV 4R8D HIS B 393 UNP I6XYD8 EXPRESSION TAG SEQRES 1 A 394 MET MET THR ARG SER GLY HIS PRO VAL THR LEU ASP ASP SEQRES 2 A 394 LEU PRO LEU ARG ALA ASP LEU ARG GLY LYS ALA PRO TYR SEQRES 3 A 394 GLY ALA PRO GLN LEU ALA VAL PRO VAL ARG LEU ASN THR SEQRES 4 A 394 ASN GLU ASN PRO HIS PRO PRO THR ARG ALA LEU VAL ASP SEQRES 5 A 394 ASP VAL VAL ARG SER VAL ARG GLU ALA ALA ILE ASP LEU SEQRES 6 A 394 HIS ARG TYR PRO ASP ARG ASP ALA VAL ALA LEU ARG ALA SEQRES 7 A 394 ASP LEU ALA GLY TYR LEU THR ALA GLN THR GLY ILE GLN SEQRES 8 A 394 LEU GLY VAL GLU ASN ILE TRP ALA ALA ASN GLY SER ASN SEQRES 9 A 394 GLU ILE LEU GLN GLN LEU LEU GLN ALA PHE GLY GLY PRO SEQRES 10 A 394 GLY ARG SER ALA ILE GLY PHE VAL PRO SER TYR SER MET SEQRES 11 A 394 HIS PRO ILE ILE SER ASP GLY THR HIS THR GLU TRP ILE SEQRES 12 A 394 GLU ALA SER ARG ALA ASN ASP PHE GLY LEU ASP VAL ASP SEQRES 13 A 394 VAL ALA VAL ALA ALA VAL VAL ASP ARG LYS PRO ASP VAL SEQRES 14 A 394 VAL PHE ILE ALA SER PRO ASN ASN PRO SER GLY GLN SER SEQRES 15 A 394 VAL SER LEU PRO ASP LEU CYS LYS LEU LEU ASP VAL ALA SEQRES 16 A 394 PRO GLY ILE ALA ILE VAL ASP GLU ALA TYR GLY GLU PHE SEQRES 17 A 394 SER SER GLN PRO SER ALA VAL SER LEU VAL GLU GLU TYR SEQRES 18 A 394 PRO SER LYS LEU VAL VAL THR ARG THR MET SER LYS ALA SEQRES 19 A 394 PHE ALA PHE ALA GLY GLY ARG LEU GLY TYR LEU ILE ALA SEQRES 20 A 394 THR PRO ALA VAL ILE ASP ALA MET LEU LEU VAL ARG LEU SEQRES 21 A 394 PRO TYR HIS LEU SER SER VAL THR GLN ALA ALA ALA ARG SEQRES 22 A 394 ALA ALA LEU ARG HIS SER ASP ASP THR LEU SER SER VAL SEQRES 23 A 394 ALA ALA LEU ILE ALA GLU ARG GLU ARG VAL THR THR SER SEQRES 24 A 394 LEU ASN ASP MET GLY PHE ARG VAL ILE PRO SER ASP ALA SEQRES 25 A 394 ASN PHE VAL LEU PHE GLY GLU PHE ALA ASP ALA PRO ALA SEQRES 26 A 394 ALA TRP ARG ARG TYR LEU GLU ALA GLY ILE LEU ILE ARG SEQRES 27 A 394 ASP VAL GLY ILE PRO GLY TYR LEU ARG ALA THR THR GLY SEQRES 28 A 394 LEU ALA GLU GLU ASN ASP ALA PHE LEU ARG ALA SER ALA SEQRES 29 A 394 ARG ILE ALA THR ASP LEU VAL PRO VAL THR ARG SER PRO SEQRES 30 A 394 VAL GLY ALA PRO LYS LEU ALA ALA ALA LEU GLU HIS HIS SEQRES 31 A 394 HIS HIS HIS HIS SEQRES 1 B 394 MET MET THR ARG SER GLY HIS PRO VAL THR LEU ASP ASP SEQRES 2 B 394 LEU PRO LEU ARG ALA ASP LEU ARG GLY LYS ALA PRO TYR SEQRES 3 B 394 GLY ALA PRO GLN LEU ALA VAL PRO VAL ARG LEU ASN THR SEQRES 4 B 394 ASN GLU ASN PRO HIS PRO PRO THR ARG ALA LEU VAL ASP SEQRES 5 B 394 ASP VAL VAL ARG SER VAL ARG GLU ALA ALA ILE ASP LEU SEQRES 6 B 394 HIS ARG TYR PRO ASP ARG ASP ALA VAL ALA LEU ARG ALA SEQRES 7 B 394 ASP LEU ALA GLY TYR LEU THR ALA GLN THR GLY ILE GLN SEQRES 8 B 394 LEU GLY VAL GLU ASN ILE TRP ALA ALA ASN GLY SER ASN SEQRES 9 B 394 GLU ILE LEU GLN GLN LEU LEU GLN ALA PHE GLY GLY PRO SEQRES 10 B 394 GLY ARG SER ALA ILE GLY PHE VAL PRO SER TYR SER MET SEQRES 11 B 394 HIS PRO ILE ILE SER ASP GLY THR HIS THR GLU TRP ILE SEQRES 12 B 394 GLU ALA SER ARG ALA ASN ASP PHE GLY LEU ASP VAL ASP SEQRES 13 B 394 VAL ALA VAL ALA ALA VAL VAL ASP ARG LYS PRO ASP VAL SEQRES 14 B 394 VAL PHE ILE ALA SER PRO ASN ASN PRO SER GLY GLN SER SEQRES 15 B 394 VAL SER LEU PRO ASP LEU CYS LYS LEU LEU ASP VAL ALA SEQRES 16 B 394 PRO GLY ILE ALA ILE VAL ASP GLU ALA TYR GLY GLU PHE SEQRES 17 B 394 SER SER GLN PRO SER ALA VAL SER LEU VAL GLU GLU TYR SEQRES 18 B 394 PRO SER LYS LEU VAL VAL THR ARG THR MET SER LYS ALA SEQRES 19 B 394 PHE ALA PHE ALA GLY GLY ARG LEU GLY TYR LEU ILE ALA SEQRES 20 B 394 THR PRO ALA VAL ILE ASP ALA MET LEU LEU VAL ARG LEU SEQRES 21 B 394 PRO TYR HIS LEU SER SER VAL THR GLN ALA ALA ALA ARG SEQRES 22 B 394 ALA ALA LEU ARG HIS SER ASP ASP THR LEU SER SER VAL SEQRES 23 B 394 ALA ALA LEU ILE ALA GLU ARG GLU ARG VAL THR THR SER SEQRES 24 B 394 LEU ASN ASP MET GLY PHE ARG VAL ILE PRO SER ASP ALA SEQRES 25 B 394 ASN PHE VAL LEU PHE GLY GLU PHE ALA ASP ALA PRO ALA SEQRES 26 B 394 ALA TRP ARG ARG TYR LEU GLU ALA GLY ILE LEU ILE ARG SEQRES 27 B 394 ASP VAL GLY ILE PRO GLY TYR LEU ARG ALA THR THR GLY SEQRES 28 B 394 LEU ALA GLU GLU ASN ASP ALA PHE LEU ARG ALA SER ALA SEQRES 29 B 394 ARG ILE ALA THR ASP LEU VAL PRO VAL THR ARG SER PRO SEQRES 30 B 394 VAL GLY ALA PRO LYS LEU ALA ALA ALA LEU GLU HIS HIS SEQRES 31 B 394 HIS HIS HIS HIS HET PLP A 401 15 HET MES A 402 12 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET PLP B 401 15 HET MES B 402 12 HET SO4 B 403 5 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM SO4 SULFATE ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 5 SO4 4(O4 S 2-) FORMUL 11 HOH *271(H2 O) HELIX 1 1 THR A 9 LEU A 13 5 5 HELIX 2 2 ARG A 16 ARG A 20 5 5 HELIX 3 3 THR A 46 ILE A 62 1 17 HELIX 4 4 ALA A 72 GLY A 88 1 17 HELIX 5 5 GLY A 92 GLU A 94 5 3 HELIX 6 6 ASN A 100 GLY A 114 1 15 HELIX 7 7 SER A 128 THR A 137 1 10 HELIX 8 8 ASP A 153 LYS A 165 1 13 HELIX 9 9 SER A 183 ALA A 194 1 12 HELIX 10 10 TYR A 204 SER A 208 5 5 HELIX 11 11 SER A 212 VAL A 217 5 6 HELIX 12 12 PHE A 236 ARG A 240 5 5 HELIX 13 13 THR A 247 ARG A 258 1 12 HELIX 14 14 SER A 264 ARG A 276 1 13 HELIX 15 15 HIS A 277 MET A 302 1 26 HELIX 16 16 ASP A 321 ALA A 332 1 12 HELIX 17 17 LEU A 351 ALA A 366 1 16 HELIX 18 18 THR A 367 LEU A 369 5 3 HELIX 19 19 THR B 9 LEU B 13 5 5 HELIX 20 20 ARG B 16 ARG B 20 5 5 HELIX 21 21 THR B 46 ILE B 62 1 17 HELIX 22 22 ALA B 72 GLY B 88 1 17 HELIX 23 23 GLY B 92 GLU B 94 5 3 HELIX 24 24 ASN B 100 GLY B 114 1 15 HELIX 25 25 SER B 128 THR B 137 1 10 HELIX 26 26 ASP B 153 LYS B 165 1 13 HELIX 27 27 SER B 183 ALA B 194 1 12 HELIX 28 28 TYR B 204 SER B 208 5 5 HELIX 29 29 SER B 212 VAL B 217 5 6 HELIX 30 30 PHE B 236 ARG B 240 5 5 HELIX 31 31 THR B 247 ARG B 258 1 12 HELIX 32 32 SER B 264 ARG B 276 1 13 HELIX 33 33 HIS B 277 SER B 283 1 7 HELIX 34 34 SER B 284 MET B 302 1 19 HELIX 35 35 ASP B 321 ALA B 332 1 12 HELIX 36 36 LEU B 351 ALA B 366 1 16 HELIX 37 37 THR B 367 LEU B 369 5 3 SHEET 1 A 2 VAL A 34 ARG A 35 0 SHEET 2 A 2 ILE A 334 LEU A 335 1 O LEU A 335 N VAL A 34 SHEET 1 B 7 ILE A 96 ALA A 99 0 SHEET 2 B 7 GLY A 242 ILE A 245 -1 O GLY A 242 N ALA A 99 SHEET 3 B 7 LEU A 224 THR A 229 -1 N VAL A 226 O ILE A 245 SHEET 4 B 7 ILE A 197 ASP A 201 1 N VAL A 200 O THR A 227 SHEET 5 B 7 VAL A 168 ALA A 172 1 N VAL A 169 O ILE A 199 SHEET 6 B 7 SER A 119 VAL A 124 1 N ILE A 121 O PHE A 170 SHEET 7 B 7 GLU A 140 SER A 145 1 O GLU A 140 N ALA A 120 SHEET 1 C 3 ARG A 305 VAL A 306 0 SHEET 2 C 3 PHE A 313 GLY A 317 -1 O GLY A 317 N ARG A 305 SHEET 3 C 3 TYR A 344 THR A 348 -1 O ALA A 347 N VAL A 314 SHEET 1 D 2 VAL B 34 ARG B 35 0 SHEET 2 D 2 ILE B 334 LEU B 335 1 O LEU B 335 N VAL B 34 SHEET 1 E 7 ILE B 96 ALA B 99 0 SHEET 2 E 7 GLY B 242 ILE B 245 -1 O GLY B 242 N ALA B 99 SHEET 3 E 7 LEU B 224 THR B 229 -1 N VAL B 226 O ILE B 245 SHEET 4 E 7 ILE B 197 ASP B 201 1 N VAL B 200 O VAL B 225 SHEET 5 E 7 VAL B 168 ALA B 172 1 N VAL B 169 O ILE B 199 SHEET 6 E 7 SER B 119 VAL B 124 1 N ILE B 121 O PHE B 170 SHEET 7 E 7 GLU B 140 SER B 145 1 O ILE B 142 N ALA B 120 SHEET 1 F 3 ARG B 305 VAL B 306 0 SHEET 2 F 3 PHE B 313 GLY B 317 -1 O GLY B 317 N ARG B 305 SHEET 3 F 3 TYR B 344 THR B 348 -1 O LEU B 345 N PHE B 316 LINK NZ LYS A 232 C4A PLP A 401 1555 1555 1.26 LINK NZ LYS B 232 C4A PLP B 401 1555 1555 1.25 CISPEP 1 VAL A 124 PRO A 125 0 -0.98 CISPEP 2 SER A 173 PRO A 174 0 -6.89 CISPEP 3 ASN A 176 PRO A 177 0 16.14 CISPEP 4 GLY A 317 GLU A 318 0 -10.23 CISPEP 5 VAL B 124 PRO B 125 0 3.35 CISPEP 6 SER B 173 PRO B 174 0 -2.79 CISPEP 7 ASN B 176 PRO B 177 0 15.44 CISPEP 8 GLY B 317 GLU B 318 0 -4.77 SITE 1 AC1 15 GLY A 101 SER A 102 ASN A 103 TYR A 127 SITE 2 AC1 15 ASN A 176 ASP A 201 ALA A 203 TYR A 204 SITE 3 AC1 15 THR A 229 SER A 231 LYS A 232 ARG A 240 SITE 4 AC1 15 MES A 402 HOH A 581 TYR B 67 SITE 1 AC2 16 TYR A 25 ASN A 37 THR A 38 ASN A 39 SITE 2 AC2 16 ASN A 103 TYR A 127 MET A 129 ASN A 176 SITE 3 AC2 16 ARG A 337 ARG A 346 PLP A 401 SO4 A 403 SITE 4 AC2 16 HOH A 601 TYR B 67 PRO B 260 TYR B 261 SITE 1 AC3 7 TYR A 25 GLY A 26 ALA A 27 ARG A 337 SITE 2 AC3 7 MES A 402 ARG B 70 TYR B 261 SITE 1 AC4 6 ALA A 17 GLU A 59 HOH A 551 HOH A 613 SITE 2 AC4 6 ARG B 118 HOH B 555 SITE 1 AC5 3 ARG A 118 HOH A 574 ALA B 17 SITE 1 AC6 14 TYR A 67 GLY B 101 SER B 102 ASN B 103 SITE 2 AC6 14 TYR B 127 ASN B 176 ASP B 201 ALA B 203 SITE 3 AC6 14 TYR B 204 THR B 229 SER B 231 LYS B 232 SITE 4 AC6 14 ARG B 240 HOH B 592 SITE 1 AC7 12 TYR A 67 TYR B 25 ASN B 37 THR B 38 SITE 2 AC7 12 ASN B 39 ASN B 103 TYR B 127 MET B 129 SITE 3 AC7 12 ASN B 176 ARG B 337 ARG B 346 SO4 B 403 SITE 1 AC8 7 ARG A 70 TYR A 261 TYR B 25 GLY B 26 SITE 2 AC8 7 ALA B 27 ARG B 337 MES B 402 CRYST1 67.525 101.523 114.947 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014809 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008700 0.00000