HEADER IMMUNE SYSTEM 03-SEP-14 4R90 TITLE ANTI CD70 LLAMA GLAMA FAB 27B3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI CD70 LLAMA GLAMA FAB 27B3 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI CD70 LLAMA GLAMA FAB 27B3 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LLAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 6 EXPRESSION_SYSTEM_CELL: OVARY; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: LLAMA GLAMA; SOURCE 9 ORGANISM_TAXID: 9844; SOURCE 10 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 12 EXPRESSION_SYSTEM_CELL: OVARY KEYWDS IMMUNOGLOBULIN FOLD, IMMUNE SYSTEM, HUMAN CD70 EXPDTA X-RAY DIFFRACTION AUTHOR A.KLARENBEEK,K.EL MAZOUARI,A.DESMYTER,C.BLANCHETOT,A.HULTBERG, AUTHOR 2 R.C.ROOVERS,C.CAMBILLAU,S.SPINELLI,J.DEL-FAVERO,T.VERRIPS,H.DE AUTHOR 3 HAARD,I.ACHOUR REVDAT 4 20-SEP-23 4R90 1 REMARK LINK REVDAT 3 22-NOV-17 4R90 1 REMARK REVDAT 2 15-JUL-15 4R90 1 JRNL REVDAT 1 24-JUN-15 4R90 0 JRNL AUTH A.KLARENBEEK,K.E.MAZOUARI,A.DESMYTER,C.BLANCHETOT, JRNL AUTH 2 A.HULTBERG,N.DE JONGE,R.C.ROOVERS,C.CAMBILLAU,S.SPINELLI, JRNL AUTH 3 J.DEL-FAVERO,T.VERRIPS,H.J.DE HAARD,I.ACHOUR JRNL TITL CAMELID IG V GENES REVEAL SIGNIFICANT HUMAN HOMOLOGY NOT JRNL TITL 2 SEEN IN THERAPEUTIC TARGET GENES, PROVIDING FOR A POWERFUL JRNL TITL 3 THERAPEUTIC ANTIBODY PLATFORM. JRNL REF MABS V. 7 693 2015 JRNL REFN ISSN 1942-0862 JRNL PMID 26018625 JRNL DOI 10.1080/19420862.2015.1046648 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2753 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3535 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 567 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.335 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3502 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2274 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4821 ; 1.274 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5624 ; 0.797 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 474 ; 6.606 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;36.791 ;24.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;12.788 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.796 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4034 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 676 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 2 L 30 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4250 12.2520 -59.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.1023 REMARK 3 T33: 0.1160 T12: -0.0625 REMARK 3 T13: -0.0720 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.7087 L22: 1.6909 REMARK 3 L33: 5.6164 L12: -0.1443 REMARK 3 L13: -1.2568 L23: 0.5338 REMARK 3 S TENSOR REMARK 3 S11: -0.2467 S12: -0.1903 S13: 0.1406 REMARK 3 S21: 0.0209 S22: 0.1605 S23: -0.3182 REMARK 3 S31: -0.5124 S32: 0.5926 S33: 0.0862 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 31 L 50 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8310 4.7730 -63.5760 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0237 REMARK 3 T33: 0.0372 T12: -0.0093 REMARK 3 T13: -0.0220 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.5788 L22: 2.2451 REMARK 3 L33: 2.9648 L12: -0.1208 REMARK 3 L13: 0.4884 L23: 1.2878 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: -0.1138 S13: 0.0624 REMARK 3 S21: 0.1353 S22: -0.0356 S23: 0.1159 REMARK 3 S31: -0.1309 S32: -0.0670 S33: 0.1424 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 51 L 75 REMARK 3 ORIGIN FOR THE GROUP (A): -17.1760 13.3000 -67.3810 REMARK 3 T TENSOR REMARK 3 T11: 0.1694 T22: 0.0185 REMARK 3 T33: 0.0495 T12: -0.0030 REMARK 3 T13: -0.0676 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 4.7299 L22: 2.2667 REMARK 3 L33: 3.9227 L12: -0.3133 REMARK 3 L13: -0.0154 L23: 0.2053 REMARK 3 S TENSOR REMARK 3 S11: -0.1930 S12: 0.0034 S13: 0.2422 REMARK 3 S21: -0.2103 S22: 0.0483 S23: 0.0088 REMARK 3 S31: -0.5777 S32: -0.1462 S33: 0.1448 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 76 L 110 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4390 6.8970 -59.9280 REMARK 3 T TENSOR REMARK 3 T11: 0.0975 T22: 0.0468 REMARK 3 T33: 0.0725 T12: -0.0003 REMARK 3 T13: -0.0249 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.0616 L22: 2.3405 REMARK 3 L33: 4.7116 L12: -1.1071 REMARK 3 L13: -0.8942 L23: 2.2382 REMARK 3 S TENSOR REMARK 3 S11: -0.2044 S12: -0.0895 S13: -0.0310 REMARK 3 S21: 0.0095 S22: 0.0691 S23: 0.0307 REMARK 3 S31: -0.2031 S32: 0.0771 S33: 0.1352 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 111 L 150 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3400 -0.0460 -36.0170 REMARK 3 T TENSOR REMARK 3 T11: 0.0266 T22: 0.0315 REMARK 3 T33: 0.0405 T12: 0.0095 REMARK 3 T13: -0.0052 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.9867 L22: 3.1339 REMARK 3 L33: 0.8432 L12: -2.1386 REMARK 3 L13: 0.5445 L23: -0.9017 REMARK 3 S TENSOR REMARK 3 S11: -0.0910 S12: -0.1190 S13: -0.0253 REMARK 3 S21: 0.0234 S22: 0.0638 S23: -0.0006 REMARK 3 S31: -0.0308 S32: -0.0768 S33: 0.0272 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 151 L 212 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9790 0.6150 -40.6980 REMARK 3 T TENSOR REMARK 3 T11: 0.0367 T22: 0.0217 REMARK 3 T33: 0.0260 T12: 0.0095 REMARK 3 T13: 0.0107 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.7609 L22: 3.0678 REMARK 3 L33: 0.6344 L12: -0.8939 REMARK 3 L13: 0.0549 L23: 0.0412 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: 0.0655 S13: 0.0503 REMARK 3 S21: -0.1434 S22: -0.0537 S23: -0.1909 REMARK 3 S31: -0.0582 S32: 0.0013 S33: 0.0788 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 30 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7060 -17.1760 -60.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.0196 T22: 0.0502 REMARK 3 T33: 0.0428 T12: -0.0062 REMARK 3 T13: 0.0092 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 2.2632 L22: 0.6836 REMARK 3 L33: 0.4441 L12: -0.3050 REMARK 3 L13: 0.5767 L23: -0.1715 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: -0.1262 S13: -0.1266 REMARK 3 S21: 0.0232 S22: 0.0604 S23: 0.0640 REMARK 3 S31: 0.0422 S32: -0.0793 S33: -0.0215 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 31 H 50 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2120 -8.1070 -63.8130 REMARK 3 T TENSOR REMARK 3 T11: 0.0364 T22: 0.0504 REMARK 3 T33: 0.0531 T12: -0.0073 REMARK 3 T13: -0.0076 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.8463 L22: 1.8847 REMARK 3 L33: 1.1146 L12: 0.1201 REMARK 3 L13: 0.3055 L23: -0.7104 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: -0.0395 S13: 0.0241 REMARK 3 S21: 0.0843 S22: 0.0142 S23: -0.1600 REMARK 3 S31: -0.0967 S32: 0.0569 S33: 0.0374 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 51 H 75 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9970 -16.4810 -71.9980 REMARK 3 T TENSOR REMARK 3 T11: 0.0223 T22: 0.0690 REMARK 3 T33: 0.0406 T12: -0.0121 REMARK 3 T13: 0.0134 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 3.3439 L22: 0.7062 REMARK 3 L33: 1.3228 L12: 0.4412 REMARK 3 L13: 1.5063 L23: 0.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.0595 S12: 0.1592 S13: -0.0903 REMARK 3 S21: -0.0769 S22: 0.0272 S23: -0.0190 REMARK 3 S31: 0.0247 S32: 0.1250 S33: 0.0323 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 76 H 118 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9940 -10.5240 -64.2770 REMARK 3 T TENSOR REMARK 3 T11: 0.0222 T22: 0.0421 REMARK 3 T33: 0.0358 T12: -0.0082 REMARK 3 T13: -0.0037 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.9959 L22: 0.5896 REMARK 3 L33: 0.6788 L12: -0.2521 REMARK 3 L13: 0.4025 L23: -0.0838 REMARK 3 S TENSOR REMARK 3 S11: -0.0912 S12: -0.0527 S13: 0.0230 REMARK 3 S21: -0.0492 S22: 0.0564 S23: -0.0101 REMARK 3 S31: -0.0428 S32: -0.0027 S33: 0.0348 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 119 H 160 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4640 -10.3030 -32.5740 REMARK 3 T TENSOR REMARK 3 T11: 0.0573 T22: 0.0253 REMARK 3 T33: 0.0410 T12: -0.0042 REMARK 3 T13: 0.0119 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.3560 L22: 0.7012 REMARK 3 L33: 1.4971 L12: 0.1709 REMARK 3 L13: 0.1827 L23: 0.8460 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: 0.0070 S13: 0.0189 REMARK 3 S21: -0.0236 S22: -0.0112 S23: -0.0514 REMARK 3 S31: 0.0147 S32: -0.0447 S33: -0.0728 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 161 H 224 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0320 -9.6410 -26.5420 REMARK 3 T TENSOR REMARK 3 T11: 0.0321 T22: 0.0233 REMARK 3 T33: 0.0352 T12: -0.0019 REMARK 3 T13: 0.0137 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.6074 L22: 0.9871 REMARK 3 L33: 1.5399 L12: 0.3636 REMARK 3 L13: 0.0595 L23: 0.5111 REMARK 3 S TENSOR REMARK 3 S11: 0.0759 S12: -0.0259 S13: -0.0160 REMARK 3 S21: 0.0966 S22: -0.0802 S23: 0.0474 REMARK 3 S31: 0.0344 S32: -0.0322 S33: 0.0043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4R90 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS PLUS CHANNEL CUT REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.746 REMARK 200 RESOLUTION RANGE LOW (A) : 65.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2VXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE (SIGMA-ALDRICH, REMARK 280 A4418) AND 0.15 M NA CITRATE PH 5.5 (SIGMA-ALDRICH, PHR1416). , REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.78500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.71000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.71000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.78500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 465 ALA L 2 REMARK 465 THR L 213 REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 465 CYS H 225 REMARK 465 ASP H 226 REMARK 465 LYS H 227 REMARK 465 THR H 228 REMARK 465 HIS H 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS L 25 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 402 O HOH L 513 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 53 -56.91 70.72 REMARK 500 SER L 98 -154.75 -145.89 REMARK 500 ASP L 155 -117.15 51.79 REMARK 500 ASP H 153 60.33 64.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP H 50 OD2 REMARK 620 2 ASP H 99 OD2 137.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA H 301 DBREF 4R90 L 1 216 PDB 4R90 4R90 1 216 DBREF 4R90 H 1 229 PDB 4R90 4R90 1 229 SEQRES 1 L 216 GLN ALA VAL VAL THR GLN GLU PRO SER LEU THR VAL SER SEQRES 2 L 216 PRO GLY GLY THR VAL THR LEU THR CYS GLY LEU LYS SER SEQRES 3 L 216 GLY SER VAL THR SER THR ASN PHE PRO THR TRP TYR GLN SEQRES 4 L 216 GLN THR PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR ASN SEQRES 5 L 216 THR ASN THR ARG HIS SER GLY VAL PRO SER ARG PHE SER SEQRES 6 L 216 GLY SER ILE SER GLU ASN LYS ALA ALA LEU THR ILE THR SEQRES 7 L 216 GLY ALA GLN PRO GLU ASP GLU ALA GLU TYR PHE CYS ALA SEQRES 8 L 216 LEU PHE ILE SER ASN PRO SER VAL GLU PHE GLY GLY GLY SEQRES 9 L 216 THR GLN LEU THR VAL LEU SER GLN PRO LYS ALA ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 229 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 229 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 229 PHE THR PHE SER VAL TYR TYR MET ASN TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ASP ILE ASN SEQRES 5 H 229 ASN GLU GLY GLY THR THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 229 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 H 229 LEU THR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 H 229 ALA LEU TYR TYR CYS VAL ARG ASP ALA GLY TYR SER ASN SEQRES 9 H 229 HIS VAL PRO ILE PHE ASP SER TRP GLY GLN GLY THR GLN SEQRES 10 H 229 VAL ILE VAL ALA SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 229 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 229 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 229 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 229 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 229 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 229 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 229 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 229 PRO LYS SER CYS ASP LYS THR HIS HET GOL L 301 6 HET CA H 301 1 HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 CA CA 2+ FORMUL 5 HOH *567(H2 O) HELIX 1 1 THR L 30 PHE L 34 5 5 HELIX 2 2 GLN L 81 GLU L 85 5 5 HELIX 3 3 SER L 125 ALA L 131 1 7 HELIX 4 4 THR L 185 HIS L 192 1 8 HELIX 5 5 THR H 28 TYR H 32 5 5 HELIX 6 6 ASP H 62 LYS H 65 5 4 HELIX 7 7 LYS H 87 THR H 91 5 5 HELIX 8 8 SER H 165 ALA H 167 5 3 HELIX 9 9 SER H 196 THR H 200 5 5 HELIX 10 10 LYS H 210 ASN H 213 5 4 SHEET 1 A 4 VAL L 4 GLN L 6 0 SHEET 2 A 4 THR L 17 LEU L 24 -1 O GLY L 23 N THR L 5 SHEET 3 A 4 LYS L 72 THR L 78 -1 O LEU L 75 N LEU L 20 SHEET 4 A 4 PHE L 64 SER L 69 -1 N SER L 65 O THR L 76 SHEET 1 B 6 SER L 9 VAL L 12 0 SHEET 2 B 6 THR L 105 VAL L 109 1 O GLN L 106 N LEU L 10 SHEET 3 B 6 ALA L 86 LEU L 92 -1 N ALA L 86 O LEU L 107 SHEET 4 B 6 THR L 36 GLN L 40 -1 N TYR L 38 O PHE L 89 SHEET 5 B 6 ARG L 47 TYR L 51 -1 O ILE L 50 N TRP L 37 SHEET 6 B 6 THR L 55 ARG L 56 -1 O THR L 55 N TYR L 51 SHEET 1 C 4 SER L 9 VAL L 12 0 SHEET 2 C 4 THR L 105 VAL L 109 1 O GLN L 106 N LEU L 10 SHEET 3 C 4 ALA L 86 LEU L 92 -1 N ALA L 86 O LEU L 107 SHEET 4 C 4 GLU L 100 PHE L 101 -1 O GLU L 100 N LEU L 92 SHEET 1 D 4 SER L 118 PHE L 122 0 SHEET 2 D 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 D 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 D 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 E 4 SER L 118 PHE L 122 0 SHEET 2 E 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 E 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 E 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 F 4 SER L 157 VAL L 159 0 SHEET 2 F 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 F 4 TYR L 195 HIS L 201 -1 O GLN L 198 N ALA L 151 SHEET 4 F 4 SER L 204 VAL L 210 -1 O VAL L 206 N VAL L 199 SHEET 1 G 4 GLN H 3 SER H 7 0 SHEET 2 G 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 G 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 G 4 PHE H 68 ASP H 73 -1 N SER H 71 O THR H 80 SHEET 1 H 6 GLY H 10 VAL H 12 0 SHEET 2 H 6 THR H 116 VAL H 120 1 O GLN H 117 N GLY H 10 SHEET 3 H 6 ALA H 92 ASP H 99 -1 N TYR H 94 O THR H 116 SHEET 4 H 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 H 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 H 6 THR H 58 TYR H 60 -1 O TYR H 59 N ASP H 50 SHEET 1 I 4 GLY H 10 VAL H 12 0 SHEET 2 I 4 THR H 116 VAL H 120 1 O GLN H 117 N GLY H 10 SHEET 3 I 4 ALA H 92 ASP H 99 -1 N TYR H 94 O THR H 116 SHEET 4 I 4 PHE H 109 TRP H 112 -1 O SER H 111 N ARG H 98 SHEET 1 J 4 SER H 129 SER H 136 0 SHEET 2 J 4 THR H 144 TYR H 154 -1 O LYS H 152 N SER H 129 SHEET 3 J 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 154 SHEET 4 J 4 VAL H 172 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 K 4 SER H 129 SER H 136 0 SHEET 2 K 4 THR H 144 TYR H 154 -1 O LYS H 152 N SER H 129 SHEET 3 K 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 154 SHEET 4 K 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 L 3 THR H 160 TRP H 163 0 SHEET 2 L 3 ILE H 204 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 L 3 THR H 214 LYS H 219 -1 O VAL H 216 N VAL H 207 SSBOND 1 CYS L 22 CYS L 90 1555 1555 2.02 SSBOND 2 CYS L 138 CYS L 197 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 4 CYS H 149 CYS H 205 1555 1555 2.05 LINK OD2 ASP H 50 CA CA H 301 1555 1555 2.94 LINK OD2 ASP H 99 CA CA H 301 1555 1555 2.81 CISPEP 1 ASN L 96 PRO L 97 0 7.01 CISPEP 2 TYR L 144 PRO L 145 0 -0.92 CISPEP 3 PHE H 155 PRO H 156 0 -8.55 CISPEP 4 GLU H 157 PRO H 158 0 -0.18 CISPEP 5 GLU H 157 PRO H 158 0 -1.10 SITE 1 AC1 9 TRP H 47 HOH H 650 HOH H 704 SER L 95 SITE 2 AC1 9 ASN L 96 PRO L 97 SER L 98 GLU L 100 SITE 3 AC1 9 HOH L 640 SITE 1 AC2 4 TYR H 33 ASN H 35 ASP H 50 ASP H 99 CRYST1 63.570 66.880 125.420 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007973 0.00000