HEADER SUGAR BINDING PROTEIN 04-SEP-14 4R9G TITLE CPMNBP1 WITH MANNOTRIOSE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MBP1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDANAEROBIUS POLYSACCHAROLYTICUS; SOURCE 3 ORGANISM_TAXID: 44256; SOURCE 4 STRAIN: ATCC BAA-17; SOURCE 5 GENE: MBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MANNAN BINDING PROTEIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.CHEKAN,V.AGARWAL,S.K.NAIR REVDAT 5 28-FEB-24 4R9G 1 HETSYN REVDAT 4 29-JUL-20 4R9G 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 31-DEC-14 4R9G 1 JRNL REVDAT 2 12-NOV-14 4R9G 1 JRNL REVDAT 1 29-OCT-14 4R9G 0 JRNL AUTH J.R.CHEKAN,I.H.KWON,V.AGARWAL,D.DODD,V.REVINDRAN,R.I.MACKIE, JRNL AUTH 2 I.CANN,S.K.NAIR JRNL TITL STRUCTURAL AND BIOCHEMICAL BASIS FOR MANNAN UTILIZATION BY JRNL TITL 2 CALDANAEROBIUS POLYSACCHAROLYTICUS STRAIN ATCC BAA-17. JRNL REF J.BIOL.CHEM. V. 289 34965 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25342756 JRNL DOI 10.1074/JBC.M114.579904 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 35483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1876 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2110 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6052 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : 2.70000 REMARK 3 B33 (A**2) : -1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.380 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.965 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6278 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8542 ; 1.361 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 784 ; 6.011 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;38.596 ;26.563 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1036 ;18.382 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;18.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 940 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4722 ; 0.006 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4R9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37393 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% POLYETHYLENE GLYCOL 1500, 100 MM REMARK 280 KCL, 20 MM HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 282K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.87200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 SER A -24 REMARK 465 LYS A -23 REMARK 465 ILE A -22 REMARK 465 PHE A -21 REMARK 465 LEU A -20 REMARK 465 LYS A -19 REMARK 465 GLY A -18 REMARK 465 LYS A -17 REMARK 465 ALA A -16 REMARK 465 ILE A -15 REMARK 465 ILE A -14 REMARK 465 ALA A -13 REMARK 465 MET A -12 REMARK 465 LEU A -11 REMARK 465 LEU A -10 REMARK 465 VAL A -9 REMARK 465 ILE A -8 REMARK 465 ALA A -7 REMARK 465 VAL A -6 REMARK 465 LEU A -5 REMARK 465 ALA A -4 REMARK 465 PHE A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 CYS A 0 REMARK 465 SER A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 LYS A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 THR A 10 REMARK 465 ASN A 11 REMARK 465 GLY A 12 REMARK 465 ASN A 13 REMARK 465 LYS A 14 REMARK 465 LYS A 15 REMARK 465 THR A 62 REMARK 465 GLN A 63 REMARK 465 GLY A 64 REMARK 465 GLY A 65 REMARK 465 GLY A 66 REMARK 465 GLN A 67 REMARK 465 GLY A 68 REMARK 465 LYS A 417 REMARK 465 SER A 418 REMARK 465 LEU A 419 REMARK 465 SER A 420 REMARK 465 GLN A 421 REMARK 465 MET B -25 REMARK 465 SER B -24 REMARK 465 LYS B -23 REMARK 465 ILE B -22 REMARK 465 PHE B -21 REMARK 465 LEU B -20 REMARK 465 LYS B -19 REMARK 465 GLY B -18 REMARK 465 LYS B -17 REMARK 465 ALA B -16 REMARK 465 ILE B -15 REMARK 465 ILE B -14 REMARK 465 ALA B -13 REMARK 465 MET B -12 REMARK 465 LEU B -11 REMARK 465 LEU B -10 REMARK 465 VAL B -9 REMARK 465 ILE B -8 REMARK 465 ALA B -7 REMARK 465 VAL B -6 REMARK 465 LEU B -5 REMARK 465 ALA B -4 REMARK 465 PHE B -3 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 CYS B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 LYS B 6 REMARK 465 ASN B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 THR B 10 REMARK 465 ASN B 11 REMARK 465 GLY B 12 REMARK 465 ASN B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 THR B 62 REMARK 465 GLN B 63 REMARK 465 GLY B 64 REMARK 465 GLY B 65 REMARK 465 GLY B 66 REMARK 465 GLN B 67 REMARK 465 GLY B 68 REMARK 465 LYS B 417 REMARK 465 SER B 418 REMARK 465 LEU B 419 REMARK 465 SER B 420 REMARK 465 GLN B 421 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ILE B 189 O HOH B 799 1.90 REMARK 500 O ILE B 186 O HOH B 799 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 -143.96 -93.91 REMARK 500 ALA A 57 22.38 44.86 REMARK 500 LYS A 126 67.07 17.31 REMARK 500 ASN A 219 75.50 -156.33 REMARK 500 GLN A 250 -65.46 -103.83 REMARK 500 ALA A 255 27.56 -79.18 REMARK 500 ASN A 256 27.79 -155.65 REMARK 500 ASP A 305 -146.97 -142.66 REMARK 500 LYS A 400 18.88 56.62 REMARK 500 ALA B 26 -142.66 -75.82 REMARK 500 ASN B 78 56.59 -116.85 REMARK 500 LYS B 126 64.27 25.61 REMARK 500 ASN B 177 -52.22 68.57 REMARK 500 ASN B 219 74.26 -153.28 REMARK 500 ALA B 255 26.22 -79.60 REMARK 500 ASN B 256 16.11 -141.81 REMARK 500 ASP B 305 -154.69 -143.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 253 GLN B 254 -145.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD2 REMARK 620 2 HOH A 644 O 116.1 REMARK 620 3 ASP B 31 OD2 117.8 119.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 44 NE2 REMARK 620 2 HOH A 640 O 96.9 REMARK 620 3 HOH A 772 O 96.4 112.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 89 OD2 REMARK 620 2 HIS A 195 ND1 120.7 REMARK 620 3 GLU A 387 OE2 99.5 110.5 REMARK 620 4 HOH A 625 O 102.9 88.3 137.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 317 ND1 REMARK 620 2 GLU A 320 OE1 100.3 REMARK 620 3 HOH A 601 O 109.3 107.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 44 NE2 REMARK 620 2 HOH B 661 O 73.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 89 OD2 REMARK 620 2 HIS B 195 ND1 121.9 REMARK 620 3 GLU B 387 OE2 101.0 114.4 REMARK 620 4 HOH B 627 O 111.6 75.7 133.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 317 ND1 REMARK 620 2 GLU B 320 OE1 98.7 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R9F RELATED DB: PDB DBREF 4R9G A -25 421 UNP L0E2M2 L0E2M2_9THEO 1 447 DBREF 4R9G B -25 421 UNP L0E2M2 L0E2M2_9THEO 1 447 SEQRES 1 A 447 MET SER LYS ILE PHE LEU LYS GLY LYS ALA ILE ILE ALA SEQRES 2 A 447 MET LEU LEU VAL ILE ALA VAL LEU ALA PHE ALA GLY CYS SEQRES 3 A 447 SER GLY SER SER THR LYS ASN SER SER THR ASN GLY ASN SEQRES 4 A 447 LYS LYS GLN VAL VAL LEU THR LEU TRP TYR PRO TRP ALA SEQRES 5 A 447 GLY PRO ASP GLY ASP ALA VAL VAL SER LEU ALA LYS GLU SEQRES 6 A 447 TYR SER LYS THR HIS PRO ASN VAL GLN ILE LYS ALA GLN SEQRES 7 A 447 MET VAL SER GLY ALA GLY ILE ALA ALA THR GLN GLY GLY SEQRES 8 A 447 GLY GLN GLY LYS PHE LEU SER ALA VAL ALA ALA GLY ASN SEQRES 9 A 447 PRO PRO ASP LEU VAL LEU TYR TRP GLY GLN ASP ALA LEU SEQRES 10 A 447 PRO GLY LEU ALA ASP GLN GLY ALA ILE ILE PRO LEU ASP SEQRES 11 A 447 ASP TYR LEU LYS ASP VAL ASP THR SER LYS PHE PHE GLU SEQRES 12 A 447 ALA ALA TYR ASN ALA MET LYS TYR LYS GLY LYS ILE TYR SEQRES 13 A 447 GLY LEU PRO GLU MET VAL ASN VAL ARG VAL LEU PHE TRP SEQRES 14 A 447 ASN LYS ASP LEU PHE LYS GLN ALA GLY LEU ASP PRO ASN SEQRES 15 A 447 THR PRO PRO LYS THR ILE ALA GLU LEU ASP GLN MET ALA SEQRES 16 A 447 ALA LYS LEU THR LYS THR LYS ASN GLY THR ILE GLU GLN SEQRES 17 A 447 MET GLY PHE ILE PRO TRP ILE GLY GLN GLY VAL PRO HIS SEQRES 18 A 447 VAL MET ALA GLY VAL PHE GLY THR SER LEU VAL ASP SER SEQRES 19 A 447 ASN GLY ASN PRO ILE LEU SER PRO ASP LYS ASN PRO GLN SEQRES 20 A 447 LEU LEU ASN LEU LEU LYS TRP GLU VAL SER TYR SER ASP SEQRES 21 A 447 LYS TYR GLY ALA MET ASN ILE ASN LYS PHE ILE ALA GLY SEQRES 22 A 447 MET SER GLN ASN SER SER GLN ALA ASN ASP PRO PHE VAL SEQRES 23 A 447 LEU GLY LYS VAL ALA MET MET ILE SER GLY GLU TRP GLN SEQRES 24 A 447 ILE ASN ALA ASN LYS GLN TYR ASN PRO LYS LEU ASN PHE SEQRES 25 A 447 GLY VAL GLY PRO ILE PRO GLN ALA PRO GLY GLY LYS PRO SEQRES 26 A 447 MET PRO SER LEU MET ASP GLY ASN THR TRP MET ILE PRO SEQRES 27 A 447 LYS GLY SER LYS HIS PRO GLN GLU ALA MET ASP PHE ILE SEQRES 28 A 447 LYS TRP THR MET ASP PRO GLN ARG ILE ALA ASP THR ALA SEQRES 29 A 447 ASP LYS VAL TYR ASN ILE ALA PRO ILE VAL GLU ALA ALA SEQRES 30 A 447 LYS ILE GLN LYS LEU ASN ASN ASP PRO TYR PHE LYS GLU SEQRES 31 A 447 VAL LEU ASN VAL ALA GLN LYS GLY SER ILE TYR TYR THR SEQRES 32 A 447 PRO ALA ALA LYS GLY MET LEU SER THR GLU THR ALA ALA SEQRES 33 A 447 ASN ASN ALA PHE GLN ALA ALA GLN TYR LYS LYS SER THR SEQRES 34 A 447 PRO GLU GLN ALA LEU LYS ASN ALA GLN ALA GLU ALA GLU SEQRES 35 A 447 LYS SER LEU SER GLN SEQRES 1 B 447 MET SER LYS ILE PHE LEU LYS GLY LYS ALA ILE ILE ALA SEQRES 2 B 447 MET LEU LEU VAL ILE ALA VAL LEU ALA PHE ALA GLY CYS SEQRES 3 B 447 SER GLY SER SER THR LYS ASN SER SER THR ASN GLY ASN SEQRES 4 B 447 LYS LYS GLN VAL VAL LEU THR LEU TRP TYR PRO TRP ALA SEQRES 5 B 447 GLY PRO ASP GLY ASP ALA VAL VAL SER LEU ALA LYS GLU SEQRES 6 B 447 TYR SER LYS THR HIS PRO ASN VAL GLN ILE LYS ALA GLN SEQRES 7 B 447 MET VAL SER GLY ALA GLY ILE ALA ALA THR GLN GLY GLY SEQRES 8 B 447 GLY GLN GLY LYS PHE LEU SER ALA VAL ALA ALA GLY ASN SEQRES 9 B 447 PRO PRO ASP LEU VAL LEU TYR TRP GLY GLN ASP ALA LEU SEQRES 10 B 447 PRO GLY LEU ALA ASP GLN GLY ALA ILE ILE PRO LEU ASP SEQRES 11 B 447 ASP TYR LEU LYS ASP VAL ASP THR SER LYS PHE PHE GLU SEQRES 12 B 447 ALA ALA TYR ASN ALA MET LYS TYR LYS GLY LYS ILE TYR SEQRES 13 B 447 GLY LEU PRO GLU MET VAL ASN VAL ARG VAL LEU PHE TRP SEQRES 14 B 447 ASN LYS ASP LEU PHE LYS GLN ALA GLY LEU ASP PRO ASN SEQRES 15 B 447 THR PRO PRO LYS THR ILE ALA GLU LEU ASP GLN MET ALA SEQRES 16 B 447 ALA LYS LEU THR LYS THR LYS ASN GLY THR ILE GLU GLN SEQRES 17 B 447 MET GLY PHE ILE PRO TRP ILE GLY GLN GLY VAL PRO HIS SEQRES 18 B 447 VAL MET ALA GLY VAL PHE GLY THR SER LEU VAL ASP SER SEQRES 19 B 447 ASN GLY ASN PRO ILE LEU SER PRO ASP LYS ASN PRO GLN SEQRES 20 B 447 LEU LEU ASN LEU LEU LYS TRP GLU VAL SER TYR SER ASP SEQRES 21 B 447 LYS TYR GLY ALA MET ASN ILE ASN LYS PHE ILE ALA GLY SEQRES 22 B 447 MET SER GLN ASN SER SER GLN ALA ASN ASP PRO PHE VAL SEQRES 23 B 447 LEU GLY LYS VAL ALA MET MET ILE SER GLY GLU TRP GLN SEQRES 24 B 447 ILE ASN ALA ASN LYS GLN TYR ASN PRO LYS LEU ASN PHE SEQRES 25 B 447 GLY VAL GLY PRO ILE PRO GLN ALA PRO GLY GLY LYS PRO SEQRES 26 B 447 MET PRO SER LEU MET ASP GLY ASN THR TRP MET ILE PRO SEQRES 27 B 447 LYS GLY SER LYS HIS PRO GLN GLU ALA MET ASP PHE ILE SEQRES 28 B 447 LYS TRP THR MET ASP PRO GLN ARG ILE ALA ASP THR ALA SEQRES 29 B 447 ASP LYS VAL TYR ASN ILE ALA PRO ILE VAL GLU ALA ALA SEQRES 30 B 447 LYS ILE GLN LYS LEU ASN ASN ASP PRO TYR PHE LYS GLU SEQRES 31 B 447 VAL LEU ASN VAL ALA GLN LYS GLY SER ILE TYR TYR THR SEQRES 32 B 447 PRO ALA ALA LYS GLY MET LEU SER THR GLU THR ALA ALA SEQRES 33 B 447 ASN ASN ALA PHE GLN ALA ALA GLN TYR LYS LYS SER THR SEQRES 34 B 447 PRO GLU GLN ALA LEU LYS ASN ALA GLN ALA GLU ALA GLU SEQRES 35 B 447 LYS SER LEU SER GLN HET MAN C 1 12 HET BMA C 2 11 HET BMA C 3 11 HET MAN D 1 12 HET BMA D 2 11 HET BMA D 3 11 HET ZN A 504 1 HET ZN A 505 1 HET ZN A 506 1 HET ZN A 507 1 HET ZN B 501 1 HET ZN B 502 1 HET ZN B 503 1 HET ZN B 504 1 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 BMA 4(C6 H12 O6) FORMUL 5 ZN 8(ZN 2+) FORMUL 13 HOH *382(H2 O) HELIX 1 1 ALA A 26 HIS A 44 1 19 HELIX 2 2 SER A 55 ILE A 59 5 5 HELIX 3 3 PHE A 70 ALA A 76 1 7 HELIX 4 4 ALA A 90 GLN A 97 1 8 HELIX 5 5 LEU A 103 LEU A 107 5 5 HELIX 6 6 ASP A 111 PHE A 115 5 5 HELIX 7 7 PHE A 116 ALA A 122 1 7 HELIX 8 8 LYS A 145 ALA A 151 1 7 HELIX 9 9 THR A 161 LEU A 172 1 12 HELIX 10 10 VAL A 193 PHE A 201 1 9 HELIX 11 11 ASN A 219 GLY A 237 1 19 HELIX 12 12 GLY A 237 ILE A 245 1 9 HELIX 13 13 TRP A 272 ASN A 281 1 10 HELIX 14 14 HIS A 317 ASP A 330 1 14 HELIX 15 15 ASP A 330 TYR A 342 1 13 HELIX 16 16 ILE A 347 GLN A 354 1 8 HELIX 17 17 LYS A 355 ASN A 358 5 4 HELIX 18 18 ASP A 359 GLY A 372 1 14 HELIX 19 19 GLY A 382 TYR A 399 1 18 HELIX 20 20 THR A 403 GLU A 416 1 14 HELIX 21 21 ALA B 26 HIS B 44 1 19 HELIX 22 22 SER B 55 ILE B 59 5 5 HELIX 23 23 PHE B 70 GLY B 77 1 8 HELIX 24 24 ALA B 90 GLN B 97 1 8 HELIX 25 25 LEU B 103 LYS B 108 5 6 HELIX 26 26 ASP B 111 PHE B 115 5 5 HELIX 27 27 PHE B 116 ALA B 122 1 7 HELIX 28 28 LYS B 145 ALA B 151 1 7 HELIX 29 29 THR B 161 LEU B 172 1 12 HELIX 30 30 VAL B 193 PHE B 201 1 9 HELIX 31 31 ASN B 219 GLY B 237 1 19 HELIX 32 32 GLY B 237 ILE B 245 1 9 HELIX 33 33 TRP B 272 ASN B 281 1 10 HELIX 34 34 HIS B 317 ASP B 330 1 14 HELIX 35 35 ASP B 330 TYR B 342 1 13 HELIX 36 36 ILE B 347 GLN B 354 1 8 HELIX 37 37 LYS B 355 ASN B 358 5 4 HELIX 38 38 ASP B 359 GLY B 372 1 14 HELIX 39 39 GLY B 382 TYR B 399 1 18 HELIX 40 40 THR B 403 GLU B 416 1 14 SHEET 1 A 6 VAL A 47 MET A 53 0 SHEET 2 A 6 VAL A 17 TYR A 23 1 N LEU A 19 O LYS A 50 SHEET 3 A 6 LEU A 82 TYR A 85 1 O LEU A 84 N TRP A 22 SHEET 4 A 6 PRO A 301 MET A 310 -1 O THR A 308 N TYR A 85 SHEET 5 A 6 LEU A 132 ASN A 144 -1 N GLU A 134 O ASN A 307 SHEET 6 A 6 PHE A 286 GLY A 289 -1 O GLY A 289 N LEU A 141 SHEET 1 B 6 LYS A 174 LYS A 176 0 SHEET 2 B 6 THR A 179 PHE A 185 -1 O THR A 179 N LYS A 176 SHEET 3 B 6 VAL A 264 GLY A 270 1 O ALA A 265 N MET A 183 SHEET 4 B 6 LEU A 132 ASN A 144 -1 N VAL A 140 O SER A 269 SHEET 5 B 6 PRO A 301 MET A 310 -1 O ASN A 307 N GLU A 134 SHEET 6 B 6 SER A 373 TYR A 376 1 O TYR A 375 N MET A 304 SHEET 1 C 2 LYS A 124 TYR A 125 0 SHEET 2 C 2 LYS A 128 ILE A 129 -1 O LYS A 128 N TYR A 125 SHEET 1 D 6 VAL B 47 MET B 53 0 SHEET 2 D 6 VAL B 17 TYR B 23 1 N LEU B 19 O LYS B 50 SHEET 3 D 6 LEU B 82 TYR B 85 1 O LEU B 84 N TRP B 22 SHEET 4 D 6 PRO B 301 MET B 310 -1 O THR B 308 N TYR B 85 SHEET 5 D 6 LEU B 132 ASN B 144 -1 N LEU B 132 O TRP B 309 SHEET 6 D 6 PHE B 286 GLY B 289 -1 O GLY B 289 N LEU B 141 SHEET 1 E 6 LYS B 174 LYS B 176 0 SHEET 2 E 6 THR B 179 PHE B 185 -1 O GLU B 181 N LYS B 174 SHEET 3 E 6 VAL B 264 GLY B 270 1 O ALA B 265 N MET B 183 SHEET 4 E 6 LEU B 132 ASN B 144 -1 N PHE B 142 O MET B 267 SHEET 5 E 6 PRO B 301 MET B 310 -1 O TRP B 309 N LEU B 132 SHEET 6 E 6 SER B 373 TYR B 376 1 O TYR B 375 N MET B 304 SHEET 1 F 2 LYS B 124 TYR B 125 0 SHEET 2 F 2 LYS B 128 ILE B 129 -1 O LYS B 128 N TYR B 125 LINK O4 MAN C 1 C1 BMA C 2 1555 1555 1.45 LINK O4 BMA C 2 C1 BMA C 3 1555 1555 1.42 LINK O4 MAN D 1 C1 BMA D 2 1555 1555 1.42 LINK O4 BMA D 2 C1 BMA D 3 1555 1555 1.44 LINK OD2 ASP A 31 ZN ZN A 504 1555 1555 2.21 LINK NE2 HIS A 44 ZN ZN A 506 1555 1555 2.26 LINK OD2 ASP A 89 ZN ZN A 505 1555 1555 2.07 LINK ND1 HIS A 195 ZN ZN A 505 1555 1555 2.07 LINK ND1 HIS A 317 ZN ZN A 507 1555 1555 2.06 LINK OE1 GLU A 320 ZN ZN A 507 1555 1555 2.06 LINK OE2 GLU A 387 ZN ZN A 505 1555 1555 2.10 LINK ZN ZN A 504 O HOH A 644 1555 1555 2.65 LINK ZN ZN A 504 OD2 ASP B 31 1555 1555 2.13 LINK ZN ZN A 505 O HOH A 625 1555 1555 2.38 LINK ZN ZN A 506 O HOH A 640 1555 1555 2.33 LINK ZN ZN A 506 O HOH A 772 1555 1555 1.91 LINK ZN ZN A 507 O HOH A 601 1555 1555 2.26 LINK NE2 HIS B 44 ZN ZN B 501 1555 1555 2.37 LINK OD2 ASP B 89 ZN ZN B 504 1555 1555 2.07 LINK ND1 HIS B 195 ZN ZN B 504 1555 1555 2.10 LINK ND1 HIS B 317 ZN ZN B 502 1555 1555 1.98 LINK OE1 GLU B 320 ZN ZN B 502 1555 1555 2.09 LINK OE2 GLU B 387 ZN ZN B 504 1555 1555 1.99 LINK ZN ZN B 501 O HOH B 661 1555 1555 2.46 LINK ZN ZN B 504 O HOH B 627 1555 1555 2.35 CRYST1 63.331 101.744 67.775 90.00 116.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015790 0.000000 0.007944 0.00000 SCALE2 0.000000 0.009829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016517 0.00000