HEADER TRANSFERASE 08-SEP-14 4R9V TITLE CRYSTAL STRUCTURE OF SIALYLTRANSFERASE FROM PHOTOBACTERIUM DAMSELAE, TITLE 2 RESIDUES 113-497 CORRESPONDING TO THE GT-B DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIALYLTRANSFERASE 0160; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 113-497; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTOBACTERIUM DAMSELAE; SOURCE 3 ORGANISM_TAXID: 38293; SOURCE 4 GENE: BAA25316, BST; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ROSSMANN FOLD, GLYCOSYLTRANSFERASE GT-B STRUCTURAL GROUP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,N.HUYNH,X.CHEN,A.J.FISHER REVDAT 4 20-SEP-23 4R9V 1 REMARK SEQADV LINK REVDAT 3 14-JAN-15 4R9V 1 JRNL REVDAT 2 17-DEC-14 4R9V 1 JRNL REVDAT 1 03-DEC-14 4R9V 0 JRNL AUTH N.HUYNH,Y.LI,H.YU,S.HUANG,K.LAU,X.CHEN,A.J.FISHER JRNL TITL CRYSTAL STRUCTURES OF SIALYLTRANSFERASE FROM PHOTOBACTERIUM JRNL TITL 2 DAMSELAE. JRNL REF FEBS LETT. V. 588 4720 2014 JRNL REFN ISSN 0014-5793 JRNL PMID 25451227 JRNL DOI 10.1016/J.FEBSLET.2014.11.003 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 17873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3571 - 5.2624 0.95 2657 147 0.1652 0.1979 REMARK 3 2 5.2624 - 4.1782 0.93 2586 129 0.1386 0.1791 REMARK 3 3 4.1782 - 3.6505 0.93 2577 154 0.1525 0.2246 REMARK 3 4 3.6505 - 3.3168 0.93 2617 135 0.1877 0.2843 REMARK 3 5 3.3168 - 3.0792 0.93 2558 128 0.2013 0.2939 REMARK 3 6 3.0792 - 2.8977 0.93 2584 144 0.2113 0.2798 REMARK 3 7 2.8977 - 2.7526 0.92 2540 152 0.2251 0.3219 REMARK 3 8 2.7526 - 2.6328 0.92 2563 135 0.2246 0.2716 REMARK 3 9 2.6328 - 2.5315 0.92 2560 128 0.2193 0.3034 REMARK 3 10 2.5315 - 2.4441 0.91 2525 129 0.2266 0.2880 REMARK 3 11 2.4441 - 2.3677 0.91 2497 139 0.2391 0.3051 REMARK 3 12 2.3677 - 2.3000 0.90 2502 127 0.2536 0.3126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3178 REMARK 3 ANGLE : 1.075 4331 REMARK 3 CHIRALITY : 0.041 478 REMARK 3 PLANARITY : 0.005 561 REMARK 3 DIHEDRAL : 14.216 1154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 112:206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8922 -15.9265 108.3111 REMARK 3 T TENSOR REMARK 3 T11: 0.2757 T22: 0.2478 REMARK 3 T33: 0.2746 T12: -0.0312 REMARK 3 T13: -0.0166 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.6790 L22: 1.1550 REMARK 3 L33: 1.3175 L12: -0.6758 REMARK 3 L13: -0.0295 L23: -0.0056 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: -0.0490 S13: 0.2066 REMARK 3 S21: 0.1527 S22: 0.1286 S23: -0.1998 REMARK 3 S31: -0.1397 S32: 0.3055 S33: -0.0859 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 207:313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.0316 -14.0138 101.9682 REMARK 3 T TENSOR REMARK 3 T11: 0.2894 T22: 0.2653 REMARK 3 T33: 0.2842 T12: 0.0200 REMARK 3 T13: -0.0341 T23: 0.0505 REMARK 3 L TENSOR REMARK 3 L11: 1.0164 L22: 0.8311 REMARK 3 L33: 2.2142 L12: -0.2461 REMARK 3 L13: -0.0149 L23: 1.1063 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: 0.2012 S13: 0.1243 REMARK 3 S21: -0.1419 S22: -0.0236 S23: 0.1854 REMARK 3 S31: -0.2256 S32: -0.3505 S33: -0.0053 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 314:443 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3987 -38.3465 89.1546 REMARK 3 T TENSOR REMARK 3 T11: 0.3295 T22: 0.3925 REMARK 3 T33: 0.3341 T12: -0.0351 REMARK 3 T13: 0.0487 T23: -0.1304 REMARK 3 L TENSOR REMARK 3 L11: 1.9113 L22: 1.4487 REMARK 3 L33: 1.8314 L12: -0.9972 REMARK 3 L13: -0.6443 L23: 1.1478 REMARK 3 S TENSOR REMARK 3 S11: -0.1458 S12: 0.4244 S13: -0.3389 REMARK 3 S21: 0.0831 S22: -0.0580 S23: -0.1321 REMARK 3 S31: 0.3804 S32: 0.0887 S33: 0.0013 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 444:497 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.4739 -37.4131 87.6365 REMARK 3 T TENSOR REMARK 3 T11: 0.3621 T22: 0.5876 REMARK 3 T33: 0.3974 T12: -0.0853 REMARK 3 T13: 0.0544 T23: -0.1502 REMARK 3 L TENSOR REMARK 3 L11: 3.2263 L22: 1.4972 REMARK 3 L33: 1.3051 L12: -0.2978 REMARK 3 L13: 0.2142 L23: 0.4996 REMARK 3 S TENSOR REMARK 3 S11: -0.3331 S12: -0.1708 S13: -0.8059 REMARK 3 S21: 0.1809 S22: -0.1623 S23: 0.0679 REMARK 3 S31: -0.0233 S32: -0.2128 S33: 0.3479 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4R9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97607 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : SI CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17873 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Z4T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG-1000, 100MM IMIDAZOLE, REMARK 280 PH 8.0, 200MM CALCIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.72200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.26150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.72200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.26150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1213 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 92 REMARK 465 GLY A 93 REMARK 465 SER A 94 REMARK 465 SER A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 SER A 102 REMARK 465 SER A 103 REMARK 465 GLY A 104 REMARK 465 LEU A 105 REMARK 465 VAL A 106 REMARK 465 PRO A 107 REMARK 465 ARG A 108 REMARK 465 GLY A 109 REMARK 465 SER A 110 REMARK 465 HIS A 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 112 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 189 O HOH A 1166 1.87 REMARK 500 O HOH A 1118 O HOH A 1154 1.88 REMARK 500 OD1 ASN A 157 O HOH A 1108 1.92 REMARK 500 O HOH A 1185 O HOH A 1204 1.96 REMARK 500 O HOH A 1223 O HOH A 1226 2.04 REMARK 500 O HOH A 1124 O HOH A 1174 2.08 REMARK 500 OG SER A 222 O HOH A 1151 2.15 REMARK 500 O HOH A 1159 O HOH A 1188 2.16 REMARK 500 O HOH A 1124 O HOH A 1162 2.19 REMARK 500 ND2 ASN A 352 O HOH A 1110 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 216 O HOH A 1134 4558 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 121 -143.93 -91.54 REMARK 500 SER A 122 -53.46 -120.35 REMARK 500 LYS A 149 -53.49 -120.92 REMARK 500 ASN A 216 97.72 -63.46 REMARK 500 GLU A 217 -15.99 -48.83 REMARK 500 TRP A 361 -153.20 -110.26 REMARK 500 THR A 366 24.58 -73.39 REMARK 500 LYS A 367 -39.76 64.33 REMARK 500 THR A 462 -151.85 -93.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 291 OE2 REMARK 620 2 ALA A 311 O 69.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 345 O REMARK 620 2 SER A 348 O 82.1 REMARK 620 3 LEU A 350 O 142.3 98.0 REMARK 620 4 ASN A 352 OD1 85.0 163.9 86.5 REMARK 620 5 ASP A 395 OD2 143.0 93.1 74.7 103.0 REMARK 620 6 HOH A1150 O 75.8 78.8 67.3 88.8 139.4 REMARK 620 7 HOH A1178 O 77.9 94.6 139.2 91.9 65.9 153.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4R83 RELATED DB: PDB REMARK 900 GT-B DOMAIN WITH IG-LIKE DOMAIN REMARK 900 RELATED ID: 4R84 RELATED DB: PDB REMARK 900 GT-B DOMAIN WITH IG-LIKE DOMAIN WITH SUBSTRATE ANALOGUE CMP-3F(A) REMARK 900 NEU5AC DBREF 4R9V A 113 497 UNP O66375 O66375_9GAMM 113 497 SEQADV 4R9V MET A 92 UNP O66375 EXPRESSION TAG SEQADV 4R9V GLY A 93 UNP O66375 EXPRESSION TAG SEQADV 4R9V SER A 94 UNP O66375 EXPRESSION TAG SEQADV 4R9V SER A 95 UNP O66375 EXPRESSION TAG SEQADV 4R9V HIS A 96 UNP O66375 EXPRESSION TAG SEQADV 4R9V HIS A 97 UNP O66375 EXPRESSION TAG SEQADV 4R9V HIS A 98 UNP O66375 EXPRESSION TAG SEQADV 4R9V HIS A 99 UNP O66375 EXPRESSION TAG SEQADV 4R9V HIS A 100 UNP O66375 EXPRESSION TAG SEQADV 4R9V HIS A 101 UNP O66375 EXPRESSION TAG SEQADV 4R9V SER A 102 UNP O66375 EXPRESSION TAG SEQADV 4R9V SER A 103 UNP O66375 EXPRESSION TAG SEQADV 4R9V GLY A 104 UNP O66375 EXPRESSION TAG SEQADV 4R9V LEU A 105 UNP O66375 EXPRESSION TAG SEQADV 4R9V VAL A 106 UNP O66375 EXPRESSION TAG SEQADV 4R9V PRO A 107 UNP O66375 EXPRESSION TAG SEQADV 4R9V ARG A 108 UNP O66375 EXPRESSION TAG SEQADV 4R9V GLY A 109 UNP O66375 EXPRESSION TAG SEQADV 4R9V SER A 110 UNP O66375 EXPRESSION TAG SEQADV 4R9V HIS A 111 UNP O66375 EXPRESSION TAG SEQADV 4R9V MET A 112 UNP O66375 EXPRESSION TAG SEQRES 1 A 406 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 406 LEU VAL PRO ARG GLY SER HIS MET THR LEU GLU VAL TYR SEQRES 3 A 406 ILE ASP HIS ALA SER LEU PRO SER LEU GLN GLN LEU ILE SEQRES 4 A 406 HIS ILE ILE GLN ALA LYS ASP GLU TYR PRO SER ASN GLN SEQRES 5 A 406 ARG PHE VAL SER TRP LYS ARG VAL THR VAL ASP ALA ASP SEQRES 6 A 406 ASN ALA ASN LYS LEU ASN ILE HIS THR TYR PRO LEU LYS SEQRES 7 A 406 GLY ASN ASN THR SER PRO GLU MET VAL ALA ALA ILE ASP SEQRES 8 A 406 GLU TYR ALA GLN SER LYS ASN ARG LEU ASN ILE GLU PHE SEQRES 9 A 406 TYR THR ASN THR ALA HIS VAL PHE ASN ASN LEU PRO PRO SEQRES 10 A 406 ILE ILE GLN PRO LEU TYR ASN ASN GLU LYS VAL LYS ILE SEQRES 11 A 406 SER HIS ILE SER LEU TYR ASP ASP GLY SER SER GLU TYR SEQRES 12 A 406 VAL SER LEU TYR GLN TRP LYS ASP THR PRO ASN LYS ILE SEQRES 13 A 406 GLU THR LEU GLU GLY GLU VAL SER LEU LEU ALA ASN TYR SEQRES 14 A 406 LEU ALA GLY THR SER PRO ASP ALA PRO LYS GLY MET GLY SEQRES 15 A 406 ASN ARG TYR ASN TRP HIS LYS LEU TYR ASP THR ASP TYR SEQRES 16 A 406 TYR PHE LEU ARG GLU ASP TYR LEU ASP VAL GLU ALA ASN SEQRES 17 A 406 LEU HIS ASP LEU ARG ASP TYR LEU GLY SER SER ALA LYS SEQRES 18 A 406 GLN MET PRO TRP ASP GLU PHE ALA LYS LEU SER ASP SER SEQRES 19 A 406 GLN GLN THR LEU PHE LEU ASP ILE VAL GLY PHE ASP LYS SEQRES 20 A 406 GLU GLN LEU GLN GLN GLN TYR SER GLN SER PRO LEU PRO SEQRES 21 A 406 ASN PHE ILE PHE THR GLY THR THR THR TRP ALA GLY GLY SEQRES 22 A 406 GLU THR LYS GLU TYR TYR ALA GLN GLN GLN VAL ASN VAL SEQRES 23 A 406 ILE ASN ASN ALA ILE ASN GLU THR SER PRO TYR TYR LEU SEQRES 24 A 406 GLY LYS ASP TYR ASP LEU PHE PHE LYS GLY HIS PRO ALA SEQRES 25 A 406 GLY GLY VAL ILE ASN ASP ILE ILE LEU GLY SER PHE PRO SEQRES 26 A 406 ASP MET ILE ASN ILE PRO ALA LYS ILE SER PHE GLU VAL SEQRES 27 A 406 LEU MET MET THR ASP MET LEU PRO ASP THR VAL ALA GLY SEQRES 28 A 406 ILE ALA SER SER LEU TYR PHE THR ILE PRO ALA ASP LYS SEQRES 29 A 406 VAL ASN PHE ILE VAL PHE THR SER SER ASP THR ILE THR SEQRES 30 A 406 ASP ARG GLU GLU ALA LEU LYS SER PRO LEU VAL GLN VAL SEQRES 31 A 406 MET LEU THR LEU GLY ILE VAL LYS GLU LYS ASP VAL LEU SEQRES 32 A 406 PHE TRP ALA HET CA A1001 1 HET CA A1002 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *126(H2 O) HELIX 1 1 SER A 122 TYR A 139 1 18 HELIX 2 2 ASP A 154 LEU A 161 1 8 HELIX 3 3 SER A 174 LYS A 188 1 15 HELIX 4 4 HIS A 201 LEU A 206 1 6 HELIX 5 5 LEU A 206 TYR A 214 1 9 HELIX 6 6 SER A 231 LYS A 241 1 11 HELIX 7 7 ASN A 245 GLY A 263 1 19 HELIX 8 8 LYS A 270 ARG A 275 5 6 HELIX 9 9 ASN A 277 TYR A 282 1 6 HELIX 10 10 ASP A 292 GLU A 297 1 6 HELIX 11 11 LEU A 300 GLY A 308 1 9 HELIX 12 12 GLU A 318 LEU A 322 5 5 HELIX 13 13 SER A 323 GLY A 335 1 13 HELIX 14 14 ASP A 337 GLN A 347 1 11 HELIX 15 15 LYS A 367 ASN A 383 1 17 HELIX 16 16 GLY A 405 GLY A 413 1 9 HELIX 17 17 PHE A 427 THR A 433 1 7 HELIX 18 18 SER A 445 THR A 450 5 6 HELIX 19 19 PRO A 452 ASP A 454 5 3 HELIX 20 20 ASP A 469 LYS A 475 1 7 HELIX 21 21 SER A 476 LEU A 485 1 10 HELIX 22 22 LYS A 489 LYS A 491 5 3 SHEET 1 A 7 ILE A 163 THR A 165 0 SHEET 2 A 7 GLN A 143 TRP A 148 1 N ARG A 144 O HIS A 164 SHEET 3 A 7 THR A 113 ASP A 119 1 N TYR A 117 O SER A 147 SHEET 4 A 7 LEU A 191 ASN A 198 1 O GLU A 194 N VAL A 116 SHEET 5 A 7 VAL A 219 TYR A 227 1 O LYS A 220 N LEU A 191 SHEET 6 A 7 THR A 284 PHE A 288 1 O TYR A 287 N LEU A 226 SHEET 7 A 7 ALA A 311 GLN A 313 1 O LYS A 312 N TYR A 286 SHEET 1 B 6 ILE A 419 ILE A 421 0 SHEET 2 B 6 ASP A 395 LYS A 399 1 N PHE A 398 O ILE A 421 SHEET 3 B 6 ASN A 352 THR A 356 1 N PHE A 353 O ASP A 395 SHEET 4 B 6 THR A 439 ILE A 443 1 O THR A 439 N ASN A 352 SHEET 5 B 6 VAL A 456 PHE A 461 1 O ASN A 457 N VAL A 440 SHEET 6 B 6 VAL A 493 PHE A 495 1 O LEU A 494 N ILE A 459 LINK OE2 GLU A 291 CA CA A1002 1555 1555 2.40 LINK O ALA A 311 CA CA A1002 1555 1555 2.71 LINK O TYR A 345 CA CA A1001 1555 1555 2.41 LINK O SER A 348 CA CA A1001 1555 1555 2.52 LINK O LEU A 350 CA CA A1001 1555 1555 2.51 LINK OD1 ASN A 352 CA CA A1001 1555 1555 2.37 LINK OD2 ASP A 395 CA CA A1001 1555 1555 2.36 LINK CA CA A1001 O HOH A1150 1555 1555 2.48 LINK CA CA A1001 O HOH A1178 1555 1555 2.06 SITE 1 AC1 7 TYR A 345 SER A 348 LEU A 350 ASN A 352 SITE 2 AC1 7 ASP A 395 HOH A1150 HOH A1178 SITE 1 AC2 2 GLU A 291 ALA A 311 CRYST1 95.444 56.523 87.375 90.00 119.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010477 0.000000 0.006036 0.00000 SCALE2 0.000000 0.017692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013208 0.00000