HEADER TRANSCRIPTION/AGONIST 10-SEP-14 4RAK TITLE CRYSTAL STRUCTURE OF NUCLEAR RECEPTOR SUBFAMILY 1, GROUP H, MEMBER 2 TITLE 2 (LXRB) COMPLEXED WITH PARTIAL AGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYSTEROLS RECEPTOR LXR-BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 213-460; COMPND 5 SYNONYM: LIVER X RECEPTOR BETA, NUCLEAR RECEPTOR NER, NUCLEAR COMPND 6 RECEPTOR SUBFAMILY 1 GROUP H MEMBER 2, UBIQUITOUSLY-EXPRESSED NUCLEAR COMPND 7 RECEPTOR; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1H2, LXRB, NER, UNR KEYWDS NHR, NR1H2, LXR-B, LXRB, UNR, NER-I, RIP15, NER, LIGAND BINDING KEYWDS 2 DOMAIN, NUCLEAR HORMONE RECEPTOR, RXR, TRANSCRIPTION-AGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.NANAO REVDAT 3 28-FEB-24 4RAK 1 REMARK SEQADV REVDAT 2 14-JAN-15 4RAK 1 JRNL REVDAT 1 31-DEC-14 4RAK 0 JRNL AUTH E.KICK,R.MARTIN,Y.XIE,B.FLATT,E.SCHWEIGER,T.L.WANG,B.BUSCH, JRNL AUTH 2 M.NYMAN,X.H.GU,G.YAN,B.WAGNER,M.NANAO,L.NGUYEN,T.STOUT, JRNL AUTH 3 A.PLONOWSKI,I.SCHULMAN,J.OSTROWSKI,T.KIRCHGESSNER,R.WEXLER, JRNL AUTH 4 R.MOHAN JRNL TITL LIVER X RECEPTOR (LXR) PARTIAL AGONISTS: BIARYL PYRAZOLES JRNL TITL 2 AND IMIDAZOLES DISPLAYING A PREFERENCE FOR LXR BETA. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 372 2015 JRNL REFN ISSN 0960-894X JRNL PMID 25435151 JRNL DOI 10.1016/J.BMCL.2014.11.029 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1920 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2665 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3807 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4015 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3940 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5443 ; 1.642 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9013 ; 2.629 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 474 ; 3.171 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;41.774 ;23.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 715 ;21.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;16.375 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 596 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4490 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 971 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1881 ; 3.841 ; 5.355 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1880 ; 3.790 ; 5.352 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2348 ; 5.256 ; 7.967 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2133 ; 6.239 ; 6.084 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38284 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.91000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.12500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.12500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.91000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.91000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.31500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.12500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.31500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.91000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.12500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -88.12500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 GLY A 205 REMARK 465 GLU A 206 REMARK 465 ASN A 207 REMARK 465 LEU A 208 REMARK 465 TYR A 209 REMARK 465 PHE A 210 REMARK 465 GLN A 211 REMARK 465 GLY A 212 REMARK 465 SER A 213 REMARK 465 GLU A 214 REMARK 465 GLY A 215 REMARK 465 GLU A 216 REMARK 465 GLY A 217 REMARK 465 LEU A 444 REMARK 465 GLN A 445 REMARK 465 ASP A 446 REMARK 465 LYS A 447 REMARK 465 ASP A 458 REMARK 465 VAL A 459 REMARK 465 HIS A 460 REMARK 465 GLU A 461 REMARK 465 MET B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 GLY B 205 REMARK 465 GLU B 206 REMARK 465 ASN B 207 REMARK 465 LEU B 208 REMARK 465 TYR B 209 REMARK 465 PHE B 210 REMARK 465 GLN B 211 REMARK 465 GLY B 212 REMARK 465 SER B 213 REMARK 465 GLU B 214 REMARK 465 GLY B 215 REMARK 465 GLU B 216 REMARK 465 GLY B 217 REMARK 465 VAL B 218 REMARK 465 LEU B 254 REMARK 465 GLY B 255 REMARK 465 ALA B 256 REMARK 465 ASP B 257 REMARK 465 PRO B 258 REMARK 465 GLN B 259 REMARK 465 SER B 260 REMARK 465 ARG B 261 REMARK 465 VAL B 459 REMARK 465 HIS B 460 REMARK 465 GLU B 461 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 218 CG1 CG2 REMARK 470 GLN B 219 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 346 O HOH A 609 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 346 OE1 GLN A 346 8554 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 330 -138.81 54.93 REMARK 500 VAL A 347 -23.15 97.50 REMARK 500 ASP A 414 -75.50 -72.23 REMARK 500 GLN A 415 -18.89 76.95 REMARK 500 LEU B 330 -115.76 53.81 REMARK 500 LYS B 331 16.34 -145.96 REMARK 500 ASP B 332 -35.40 -136.43 REMARK 500 GLU B 388 65.90 -119.72 REMARK 500 ASP B 414 -76.19 -72.26 REMARK 500 GLN B 415 -26.96 79.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 652 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 652 B 502 DBREF 4RAK A 214 461 UNP P55055 NR1H2_HUMAN 213 460 DBREF 4RAK B 214 461 UNP P55055 NR1H2_HUMAN 213 460 SEQADV 4RAK MET A 198 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS A 199 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS A 200 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS A 201 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS A 202 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS A 203 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS A 204 UNP P55055 EXPRESSION TAG SEQADV 4RAK GLY A 205 UNP P55055 EXPRESSION TAG SEQADV 4RAK GLU A 206 UNP P55055 EXPRESSION TAG SEQADV 4RAK ASN A 207 UNP P55055 EXPRESSION TAG SEQADV 4RAK LEU A 208 UNP P55055 EXPRESSION TAG SEQADV 4RAK TYR A 209 UNP P55055 EXPRESSION TAG SEQADV 4RAK PHE A 210 UNP P55055 EXPRESSION TAG SEQADV 4RAK GLN A 211 UNP P55055 EXPRESSION TAG SEQADV 4RAK GLY A 212 UNP P55055 EXPRESSION TAG SEQADV 4RAK SER A 213 UNP P55055 EXPRESSION TAG SEQADV 4RAK MET B 198 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS B 199 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS B 200 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS B 201 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS B 202 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS B 203 UNP P55055 EXPRESSION TAG SEQADV 4RAK HIS B 204 UNP P55055 EXPRESSION TAG SEQADV 4RAK GLY B 205 UNP P55055 EXPRESSION TAG SEQADV 4RAK GLU B 206 UNP P55055 EXPRESSION TAG SEQADV 4RAK ASN B 207 UNP P55055 EXPRESSION TAG SEQADV 4RAK LEU B 208 UNP P55055 EXPRESSION TAG SEQADV 4RAK TYR B 209 UNP P55055 EXPRESSION TAG SEQADV 4RAK PHE B 210 UNP P55055 EXPRESSION TAG SEQADV 4RAK GLN B 211 UNP P55055 EXPRESSION TAG SEQADV 4RAK GLY B 212 UNP P55055 EXPRESSION TAG SEQADV 4RAK SER B 213 UNP P55055 EXPRESSION TAG SEQRES 1 A 264 MET HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU TYR PHE SEQRES 2 A 264 GLN GLY SER GLU GLY GLU GLY VAL GLN LEU THR ALA ALA SEQRES 3 A 264 GLN GLU LEU MET ILE GLN GLN LEU VAL ALA ALA GLN LEU SEQRES 4 A 264 GLN CYS ASN LYS ARG SER PHE SER ASP GLN PRO LYS VAL SEQRES 5 A 264 THR PRO TRP PRO LEU GLY ALA ASP PRO GLN SER ARG ASP SEQRES 6 A 264 ALA ARG GLN GLN ARG PHE ALA HIS PHE THR GLU LEU ALA SEQRES 7 A 264 ILE ILE SER VAL GLN GLU ILE VAL ASP PHE ALA LYS GLN SEQRES 8 A 264 VAL PRO GLY PHE LEU GLN LEU GLY ARG GLU ASP GLN ILE SEQRES 9 A 264 ALA LEU LEU LYS ALA SER THR ILE GLU ILE MET LEU LEU SEQRES 10 A 264 GLU THR ALA ARG ARG TYR ASN HIS GLU THR GLU CYS ILE SEQRES 11 A 264 THR PHE LEU LYS ASP PHE THR TYR SER LYS ASP ASP PHE SEQRES 12 A 264 HIS ARG ALA GLY LEU GLN VAL GLU PHE ILE ASN PRO ILE SEQRES 13 A 264 PHE GLU PHE SER ARG ALA MET ARG ARG LEU GLY LEU ASP SEQRES 14 A 264 ASP ALA GLU TYR ALA LEU LEU ILE ALA ILE ASN ILE PHE SEQRES 15 A 264 SER ALA ASP ARG PRO ASN VAL GLN GLU PRO GLY ARG VAL SEQRES 16 A 264 GLU ALA LEU GLN GLN PRO TYR VAL GLU ALA LEU LEU SER SEQRES 17 A 264 TYR THR ARG ILE LYS ARG PRO GLN ASP GLN LEU ARG PHE SEQRES 18 A 264 PRO ARG MET LEU MET LYS LEU VAL SER LEU ARG THR LEU SEQRES 19 A 264 SER SER VAL HIS SER GLU GLN VAL PHE ALA LEU ARG LEU SEQRES 20 A 264 GLN ASP LYS LYS LEU PRO PRO LEU LEU SER GLU ILE TRP SEQRES 21 A 264 ASP VAL HIS GLU SEQRES 1 B 264 MET HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU TYR PHE SEQRES 2 B 264 GLN GLY SER GLU GLY GLU GLY VAL GLN LEU THR ALA ALA SEQRES 3 B 264 GLN GLU LEU MET ILE GLN GLN LEU VAL ALA ALA GLN LEU SEQRES 4 B 264 GLN CYS ASN LYS ARG SER PHE SER ASP GLN PRO LYS VAL SEQRES 5 B 264 THR PRO TRP PRO LEU GLY ALA ASP PRO GLN SER ARG ASP SEQRES 6 B 264 ALA ARG GLN GLN ARG PHE ALA HIS PHE THR GLU LEU ALA SEQRES 7 B 264 ILE ILE SER VAL GLN GLU ILE VAL ASP PHE ALA LYS GLN SEQRES 8 B 264 VAL PRO GLY PHE LEU GLN LEU GLY ARG GLU ASP GLN ILE SEQRES 9 B 264 ALA LEU LEU LYS ALA SER THR ILE GLU ILE MET LEU LEU SEQRES 10 B 264 GLU THR ALA ARG ARG TYR ASN HIS GLU THR GLU CYS ILE SEQRES 11 B 264 THR PHE LEU LYS ASP PHE THR TYR SER LYS ASP ASP PHE SEQRES 12 B 264 HIS ARG ALA GLY LEU GLN VAL GLU PHE ILE ASN PRO ILE SEQRES 13 B 264 PHE GLU PHE SER ARG ALA MET ARG ARG LEU GLY LEU ASP SEQRES 14 B 264 ASP ALA GLU TYR ALA LEU LEU ILE ALA ILE ASN ILE PHE SEQRES 15 B 264 SER ALA ASP ARG PRO ASN VAL GLN GLU PRO GLY ARG VAL SEQRES 16 B 264 GLU ALA LEU GLN GLN PRO TYR VAL GLU ALA LEU LEU SER SEQRES 17 B 264 TYR THR ARG ILE LYS ARG PRO GLN ASP GLN LEU ARG PHE SEQRES 18 B 264 PRO ARG MET LEU MET LYS LEU VAL SER LEU ARG THR LEU SEQRES 19 B 264 SER SER VAL HIS SER GLU GLN VAL PHE ALA LEU ARG LEU SEQRES 20 B 264 GLN ASP LYS LYS LEU PRO PRO LEU LEU SER GLU ILE TRP SEQRES 21 B 264 ASP VAL HIS GLU HET BU1 A 501 6 HET BU1 A 502 6 HET 652 A 503 35 HET BU1 B 501 6 HET 652 B 502 35 HETNAM BU1 1,4-BUTANEDIOL HETNAM 652 2-{2-[2-(2-CHLOROPHENYL)PROPAN-2-YL]-1-[3'- HETNAM 2 652 (METHYLSULFONYL)BIPHENYL-4-YL]-1H-IMIDAZOL-4- HETNAM 3 652 YL}PROPAN-2-OL FORMUL 3 BU1 3(C4 H10 O2) FORMUL 5 652 2(C28 H29 CL N2 O3 S) FORMUL 8 HOH *183(H2 O) HELIX 1 1 THR A 221 PHE A 243 1 23 HELIX 2 2 SER A 244 GLN A 246 5 3 HELIX 3 3 SER A 260 GLN A 288 1 29 HELIX 4 4 GLY A 291 LEU A 295 5 5 HELIX 5 5 GLY A 296 ARG A 319 1 24 HELIX 6 6 SER A 336 ARG A 342 1 7 HELIX 7 7 PHE A 349 ARG A 362 1 14 HELIX 8 8 ASP A 366 PHE A 379 1 14 HELIX 9 9 GLU A 388 ARG A 411 1 24 HELIX 10 10 LEU A 416 SER A 436 1 21 HELIX 11 11 PRO A 450 TRP A 457 1 8 HELIX 12 12 THR B 221 SER B 242 1 22 HELIX 13 13 PHE B 243 GLN B 246 5 4 HELIX 14 14 ALA B 263 GLN B 288 1 26 HELIX 15 15 GLY B 291 LEU B 295 5 5 HELIX 16 16 GLY B 296 ARG B 319 1 24 HELIX 17 17 LYS B 337 ARG B 342 1 6 HELIX 18 18 GLN B 346 LEU B 363 1 18 HELIX 19 19 ASP B 366 PHE B 379 1 14 HELIX 20 20 GLU B 388 ARG B 411 1 24 HELIX 21 21 LEU B 416 VAL B 439 1 24 HELIX 22 22 PHE B 440 ARG B 443 5 4 HELIX 23 23 PRO B 450 ASP B 458 1 9 SHEET 1 A 3 TYR A 320 ASN A 321 0 SHEET 2 A 3 CYS A 326 PHE A 329 -1 O CYS A 326 N ASN A 321 SHEET 3 A 3 PHE A 333 TYR A 335 -1 O TYR A 335 N ILE A 327 SHEET 1 B 3 TYR B 320 ASN B 321 0 SHEET 2 B 3 CYS B 326 PHE B 329 -1 O CYS B 326 N ASN B 321 SHEET 3 B 3 PHE B 333 SER B 336 -1 O PHE B 333 N PHE B 329 SITE 1 AC1 7 GLN A 235 GLU A 281 PHE A 285 GLU A 315 SITE 2 AC1 7 ARG A 318 ILE A 374 HOH A 664 SITE 1 AC2 10 GLU A 393 GLN A 396 GLN A 397 HOH A 616 SITE 2 AC2 10 HOH A 648 HOH A 681 PRO B 419 ARG B 420 SITE 3 AC2 10 MET B 423 LYS B 424 SITE 1 AC3 16 PHE A 268 PHE A 271 THR A 272 LEU A 274 SITE 2 AC3 16 ALA A 275 ILE A 277 SER A 278 GLU A 281 SITE 3 AC3 16 MET A 312 LEU A 313 THR A 316 ARG A 319 SITE 4 AC3 16 PHE A 329 LEU A 330 LEU A 345 ILE A 353 SITE 1 AC4 5 GLN B 235 GLU B 281 GLU B 315 ILE B 374 SITE 2 AC4 5 HOH B 633 SITE 1 AC5 17 PHE B 268 PHE B 271 THR B 272 LEU B 274 SITE 2 AC5 17 ALA B 275 SER B 278 GLU B 281 ILE B 309 SITE 3 AC5 17 LEU B 313 THR B 316 ARG B 319 PHE B 329 SITE 4 AC5 17 LEU B 330 PHE B 340 HIS B 435 LEU B 449 SITE 5 AC5 17 TRP B 457 CRYST1 55.820 120.630 176.250 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017915 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005674 0.00000