HEADER METAL BINDING PROTEIN 12-SEP-14 4RAZ TITLE CRYSTAL STRUCTURE OF MAGNETOSPIRILLUM GRYPHISWALDENSE MSR-1 HOLO-FUR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING TRANSCRIPTIONAL DUAL REGULATOR OF SIDEROPHORE COMPND 3 BIOSYNTHESIS AND TRANSPORT(FUR FAMILY); COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOSPIRILLUM GRYPHISWALDENSE; SOURCE 3 ORGANISM_TAXID: 1430440; SOURCE 4 STRAIN: MSR-1 V2; SOURCE 5 GENE: FUR, MGMSRV2_3137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FERRIC UPTAKE REGULATOR (FUR), METAL ION ACTIVATION, OPERATOR KEYWDS 2 RECOGNITION, COOPERATIVITY, BROAD SUBSTRATE RECOGNITION, DNA SHAPE KEYWDS 3 READOUT, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.DENG,Q.WANG,Z.CHEN REVDAT 2 20-SEP-23 4RAZ 1 REMARK SEQADV LINK REVDAT 1 15-JUL-15 4RAZ 0 JRNL AUTH Z.DENG,Q.WANG,Z.LIU,M.ZHANG,A.C.MACHADO,T.P.CHIU,C.FENG, JRNL AUTH 2 Q.ZHANG,L.YU,L.QI,J.ZHENG,X.WANG,X.HUO,X.QI,X.LI,W.WU, JRNL AUTH 3 R.ROHS,Y.LI,Z.CHEN JRNL TITL MECHANISTIC INSIGHTS INTO METAL ION ACTIVATION AND OPERATOR JRNL TITL 2 RECOGNITION BY THE FERRIC UPTAKE REGULATOR. JRNL REF NAT COMMUN V. 6 7642 JRNL REFN ESSN 2041-1723 JRNL PMID 26134419 JRNL DOI 10.1038/NCOMMS8642 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 34732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1832 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2277 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2174 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.38000 REMARK 3 B22 (A**2) : -0.88000 REMARK 3 B33 (A**2) : -1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.926 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2268 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3062 ; 1.293 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 5.568 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;27.475 ;21.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 402 ;14.249 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;16.008 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1759 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4RAZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36732 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4RAY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.79750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.42350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.93700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.79750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.42350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.93700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.79750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.42350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.93700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.79750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.42350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.93700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -79.59500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 THR A 135 REMARK 465 SER A 136 REMARK 465 GLY A 137 REMARK 465 GLY A 138 REMARK 465 ASP A 139 REMARK 465 SER A 140 REMARK 465 ASP A 141 REMARK 465 ASP A 142 REMARK 465 LYS A 143 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 THR B 135 REMARK 465 SER B 136 REMARK 465 GLY B 137 REMARK 465 GLY B 138 REMARK 465 ASP B 139 REMARK 465 SER B 140 REMARK 465 ASP B 141 REMARK 465 ASP B 142 REMARK 465 LYS B 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 OE1 REMARK 470 GLU A 113 CD OE1 OE2 REMARK 470 LYS A 117 CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 15 CE NZ REMARK 470 GLU B 37 OE2 REMARK 470 ARG B 49 NH1 REMARK 470 GLU B 86 OE1 OE2 REMARK 470 LYS B 117 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 NE2 REMARK 620 2 GLU A 81 OE2 91.2 REMARK 620 3 GLU A 81 OE1 93.2 55.8 REMARK 620 4 HIS A 88 NE2 165.7 103.1 94.9 REMARK 620 5 HIS A 90 NE2 92.3 90.4 145.9 87.6 REMARK 620 6 GLU A 101 OE2 84.7 141.4 86.1 84.1 128.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 ASP A 89 OD1 93.8 REMARK 620 3 ASP A 89 OD2 101.4 55.8 REMARK 620 4 GLU A 108 OE1 89.6 144.9 89.3 REMARK 620 5 HIS A 125 NE2 88.7 96.0 150.2 119.0 REMARK 620 6 HOH A 395 O 172.9 92.8 84.4 86.4 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 33 NE2 REMARK 620 2 GLU B 81 OE2 88.8 REMARK 620 3 GLU B 81 OE1 96.0 58.1 REMARK 620 4 HIS B 88 NE2 162.2 108.7 95.7 REMARK 620 5 HIS B 90 NE2 89.5 91.5 148.8 87.3 REMARK 620 6 GLU B 101 OE1 87.2 143.0 85.8 80.4 125.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 87 NE2 REMARK 620 2 ASP B 89 OD2 104.9 REMARK 620 3 ASP B 89 OD1 91.0 55.9 REMARK 620 4 GLU B 108 OE2 88.8 85.8 140.3 REMARK 620 5 HIS B 125 NE2 89.4 145.9 93.8 125.9 REMARK 620 6 HOH B 394 O 173.4 80.8 94.9 88.4 87.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RAY RELATED DB: PDB REMARK 900 RELATED ID: 4RB0 RELATED DB: PDB REMARK 900 RELATED ID: 4RB1 RELATED DB: PDB REMARK 900 RELATED ID: 4RB2 RELATED DB: PDB REMARK 900 RELATED ID: 4RB3 RELATED DB: PDB DBREF 4RAZ A 1 143 UNP V6F4Q0 V6F4Q0_9PROT 1 143 DBREF 4RAZ B 1 143 UNP V6F4Q0 V6F4Q0_9PROT 1 143 SEQADV 4RAZ GLY A -1 UNP V6F4Q0 EXPRESSION TAG SEQADV 4RAZ HIS A 0 UNP V6F4Q0 EXPRESSION TAG SEQADV 4RAZ LEU A 9 UNP V6F4Q0 CYS 9 ENGINEERED MUTATION SEQADV 4RAZ LEU A 14 UNP V6F4Q0 MET 14 ENGINEERED MUTATION SEQADV 4RAZ VAL A 16 UNP V6F4Q0 MET 16 ENGINEERED MUTATION SEQADV 4RAZ GLY B -1 UNP V6F4Q0 EXPRESSION TAG SEQADV 4RAZ HIS B 0 UNP V6F4Q0 EXPRESSION TAG SEQADV 4RAZ LEU B 9 UNP V6F4Q0 CYS 9 ENGINEERED MUTATION SEQADV 4RAZ LEU B 14 UNP V6F4Q0 MET 14 ENGINEERED MUTATION SEQADV 4RAZ VAL B 16 UNP V6F4Q0 MET 16 ENGINEERED MUTATION SEQRES 1 A 145 GLY HIS MET VAL SER ARG ILE GLU GLN ARG LEU ILE ASP SEQRES 2 A 145 LYS GLY LEU LYS VAL THR ASP GLN ARG ARG VAL ILE ALA SEQRES 3 A 145 GLN VAL LEU SER ASP SER ALA ASP HIS PRO ASP VAL GLU SEQRES 4 A 145 GLU VAL TYR ARG ARG ALA THR ALA LYS ASP PRO ARG ILE SEQRES 5 A 145 SER ILE ALA THR VAL TYR ARG THR VAL ARG LEU PHE GLU SEQRES 6 A 145 GLU GLU SER ILE LEU GLU ARG HIS ASP PHE GLY ASP GLY SEQRES 7 A 145 ARG ALA ARG TYR GLU GLU ALA PRO SER GLU HIS HIS ASP SEQRES 8 A 145 HIS LEU ILE ASP VAL ASN SER ALA ARG VAL ILE GLU PHE SEQRES 9 A 145 THR SER PRO GLU ILE GLU ALA LEU GLN ARG GLU ILE ALA SEQRES 10 A 145 ARG LYS HIS GLY PHE ARG LEU VAL GLY HIS ARG LEU GLU SEQRES 11 A 145 LEU TYR GLY VAL PRO LEU THR SER GLY GLY ASP SER ASP SEQRES 12 A 145 ASP LYS SEQRES 1 B 145 GLY HIS MET VAL SER ARG ILE GLU GLN ARG LEU ILE ASP SEQRES 2 B 145 LYS GLY LEU LYS VAL THR ASP GLN ARG ARG VAL ILE ALA SEQRES 3 B 145 GLN VAL LEU SER ASP SER ALA ASP HIS PRO ASP VAL GLU SEQRES 4 B 145 GLU VAL TYR ARG ARG ALA THR ALA LYS ASP PRO ARG ILE SEQRES 5 B 145 SER ILE ALA THR VAL TYR ARG THR VAL ARG LEU PHE GLU SEQRES 6 B 145 GLU GLU SER ILE LEU GLU ARG HIS ASP PHE GLY ASP GLY SEQRES 7 B 145 ARG ALA ARG TYR GLU GLU ALA PRO SER GLU HIS HIS ASP SEQRES 8 B 145 HIS LEU ILE ASP VAL ASN SER ALA ARG VAL ILE GLU PHE SEQRES 9 B 145 THR SER PRO GLU ILE GLU ALA LEU GLN ARG GLU ILE ALA SEQRES 10 B 145 ARG LYS HIS GLY PHE ARG LEU VAL GLY HIS ARG LEU GLU SEQRES 11 B 145 LEU TYR GLY VAL PRO LEU THR SER GLY GLY ASP SER ASP SEQRES 12 B 145 ASP LYS HET MN A 201 1 HET MN A 202 1 HET EDO A 203 4 HET EDO A 204 4 HET MN B 201 1 HET MN B 202 1 HET EDO B 203 4 HETNAM MN MANGANESE (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 4(MN 2+) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 10 HOH *190(H2 O) HELIX 1 1 SER A 3 LYS A 12 1 10 HELIX 2 2 THR A 17 SER A 30 1 14 HELIX 3 3 ASP A 35 ASP A 47 1 13 HELIX 4 4 SER A 51 GLU A 65 1 15 HELIX 5 5 SER A 104 HIS A 118 1 15 HELIX 6 6 SER B 3 LYS B 12 1 10 HELIX 7 7 THR B 17 SER B 30 1 14 HELIX 8 8 ASP B 35 ASP B 47 1 13 HELIX 9 9 SER B 51 GLU B 65 1 15 HELIX 10 10 SER B 104 HIS B 118 1 15 SHEET 1 A 2 LEU A 68 ASP A 72 0 SHEET 2 A 2 ALA A 78 GLU A 82 -1 O ARG A 79 N HIS A 71 SHEET 1 B 6 VAL A 99 PHE A 102 0 SHEET 2 B 6 ASP A 89 ASP A 93 -1 N LEU A 91 O ILE A 100 SHEET 3 B 6 PHE A 120 PRO A 133 1 O LEU A 129 N ILE A 92 SHEET 4 B 6 PHE B 120 PRO B 133 -1 O TYR B 130 N VAL A 123 SHEET 5 B 6 ASP B 89 ASP B 93 1 N ILE B 92 O LEU B 129 SHEET 6 B 6 VAL B 99 PHE B 102 -1 O ILE B 100 N LEU B 91 SHEET 1 C 2 LEU B 68 ASP B 72 0 SHEET 2 C 2 ALA B 78 GLU B 82 -1 O GLU B 81 N GLU B 69 LINK NE2 HIS A 33 MN MN A 202 1555 1555 2.22 LINK OE2 GLU A 81 MN MN A 202 1555 1555 2.33 LINK OE1 GLU A 81 MN MN A 202 1555 1555 2.39 LINK NE2 HIS A 87 MN MN A 201 1555 1555 2.16 LINK NE2 HIS A 88 MN MN A 202 1555 1555 2.25 LINK OD1 ASP A 89 MN MN A 201 1555 1555 2.30 LINK OD2 ASP A 89 MN MN A 201 1555 1555 2.38 LINK NE2 HIS A 90 MN MN A 202 1555 1555 2.24 LINK OE2 GLU A 101 MN MN A 202 1555 1555 2.17 LINK OE1 GLU A 108 MN MN A 201 1555 1555 2.04 LINK NE2 HIS A 125 MN MN A 201 1555 1555 2.23 LINK MN MN A 201 O HOH A 395 1555 1555 2.27 LINK NE2 HIS B 33 MN MN B 202 1555 1555 2.25 LINK OE2 GLU B 81 MN MN B 202 1555 1555 2.19 LINK OE1 GLU B 81 MN MN B 202 1555 1555 2.28 LINK NE2 HIS B 87 MN MN B 201 1555 1555 2.13 LINK NE2 HIS B 88 MN MN B 202 1555 1555 2.23 LINK OD2 ASP B 89 MN MN B 201 1555 1555 2.37 LINK OD1 ASP B 89 MN MN B 201 1555 1555 2.38 LINK NE2 HIS B 90 MN MN B 202 1555 1555 2.22 LINK OE1 GLU B 101 MN MN B 202 1555 1555 2.20 LINK OE2 GLU B 108 MN MN B 201 1555 1555 2.06 LINK NE2 HIS B 125 MN MN B 201 1555 1555 2.21 LINK MN MN B 201 O HOH B 394 1555 1555 2.17 SITE 1 AC1 5 HIS A 87 ASP A 89 GLU A 108 HIS A 125 SITE 2 AC1 5 HOH A 395 SITE 1 AC2 5 HIS A 33 GLU A 81 HIS A 88 HIS A 90 SITE 2 AC2 5 GLU A 101 SITE 1 AC3 2 ARG A 20 THR A 58 SITE 1 AC4 3 PHE A 73 ALA A 97 HOH A 319 SITE 1 AC5 5 HIS B 87 ASP B 89 GLU B 108 HIS B 125 SITE 2 AC5 5 HOH B 394 SITE 1 AC6 5 HIS B 33 GLU B 81 HIS B 88 HIS B 90 SITE 2 AC6 5 GLU B 101 SITE 1 AC7 2 LYS A 117 PRO B 48 CRYST1 79.595 96.847 119.874 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012564 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008342 0.00000