data_4RBQ # _entry.id 4RBQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4RBQ pdb_00004rbq 10.2210/pdb4rbq/pdb NDB NA3173 ? ? RCSB RCSB087147 ? ? WWPDB D_1000087147 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-11-11 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2024-02-28 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site 8 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.name' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 34 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 35 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4RBQ _pdbx_database_status.recvd_initial_deposition_date 2014-09-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3ND3 _pdbx_database_related.details 'U-helix 16-mer dsRNA' _pdbx_database_related.content_type unspecified # _audit_author.name 'Mooers, B.H.M.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of the Trypanosome RNA Editing U-Helix with 16 Contiguous Us' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 1 'Fusion RNAs in crystallographic studies of double-stranded RNA from trypanosome RNA editing.' 'Methods Mol.Biol.' 1240 191 216 2015 ? US 1064-3745 ? ? 25352146 10.1007/978-1-4939-1896-6_14 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mooers, B.H.M.' 1 ? 1 'Mooers, B.H.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'U-Helix RNA from Trypanosome editing' 10216.987 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 5 ? ? ? ? 3 water nat water 18.015 247 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AGAGAAGAAAGGGAAAUUUUUUUUUUUUUUUU _entity_poly.pdbx_seq_one_letter_code_can AGAGAAGAAAGGGAAAUUUUUUUUUUUUUUUU _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 G n 1 3 A n 1 4 G n 1 5 A n 1 6 A n 1 7 G n 1 8 A n 1 9 A n 1 10 A n 1 11 G n 1 12 G n 1 13 G n 1 14 A n 1 15 A n 1 16 A n 1 17 U n 1 18 U n 1 19 U n 1 20 U n 1 21 U n 1 22 U n 1 23 U n 1 24 U n 1 25 U n 1 26 U n 1 27 U n 1 28 U n 1 29 U n 1 30 U n 1 31 U n 1 32 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 1 1 A A A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 U 17 17 17 U U A . n A 1 18 U 18 18 18 U U A . n A 1 19 U 19 19 19 U U A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 U 22 22 22 U U A . n A 1 23 U 23 23 23 U U A . n A 1 24 U 24 24 24 U U A . n A 1 25 U 25 25 25 U U A . n A 1 26 U 26 26 26 U U A . n A 1 27 U 27 27 27 U U A . n A 1 28 U 28 28 28 U U A . n A 1 29 U 29 29 29 U U A . n A 1 30 U 30 30 30 U U A . n A 1 31 U 31 31 31 U U A . n A 1 32 U 32 32 32 U U A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 91 K K A . C 2 K 1 102 92 K K A . D 2 K 1 103 93 K K A . E 2 K 1 104 94 K K A . F 2 K 1 105 95 K K A . G 3 HOH 1 201 101 HOH HOH A . G 3 HOH 2 202 102 HOH HOH A . G 3 HOH 3 203 103 HOH HOH A . G 3 HOH 4 204 104 HOH HOH A . G 3 HOH 5 205 105 HOH HOH A . G 3 HOH 6 206 108 HOH HOH A . G 3 HOH 7 207 109 HOH HOH A . G 3 HOH 8 208 110 HOH HOH A . G 3 HOH 9 209 111 HOH HOH A . G 3 HOH 10 210 112 HOH HOH A . G 3 HOH 11 211 114 HOH HOH A . G 3 HOH 12 212 115 HOH HOH A . G 3 HOH 13 213 116 HOH HOH A . G 3 HOH 14 214 117 HOH HOH A . G 3 HOH 15 215 118 HOH HOH A . G 3 HOH 16 216 119 HOH HOH A . G 3 HOH 17 217 120 HOH HOH A . G 3 HOH 18 218 121 HOH HOH A . G 3 HOH 19 219 122 HOH HOH A . G 3 HOH 20 220 123 HOH HOH A . G 3 HOH 21 221 124 HOH HOH A . G 3 HOH 22 222 125 HOH HOH A . G 3 HOH 23 223 126 HOH HOH A . G 3 HOH 24 224 127 HOH HOH A . G 3 HOH 25 225 128 HOH HOH A . G 3 HOH 26 226 129 HOH HOH A . G 3 HOH 27 227 130 HOH HOH A . G 3 HOH 28 228 131 HOH HOH A . G 3 HOH 29 229 132 HOH HOH A . G 3 HOH 30 230 133 HOH HOH A . G 3 HOH 31 231 134 HOH HOH A . G 3 HOH 32 232 135 HOH HOH A . G 3 HOH 33 233 136 HOH HOH A . G 3 HOH 34 234 137 HOH HOH A . G 3 HOH 35 235 138 HOH HOH A . G 3 HOH 36 236 139 HOH HOH A . G 3 HOH 37 237 140 HOH HOH A . G 3 HOH 38 238 141 HOH HOH A . G 3 HOH 39 239 142 HOH HOH A . G 3 HOH 40 240 143 HOH HOH A . G 3 HOH 41 241 144 HOH HOH A . G 3 HOH 42 242 145 HOH HOH A . G 3 HOH 43 243 146 HOH HOH A . G 3 HOH 44 244 147 HOH HOH A . G 3 HOH 45 245 148 HOH HOH A . G 3 HOH 46 246 149 HOH HOH A . G 3 HOH 47 247 150 HOH HOH A . G 3 HOH 48 248 151 HOH HOH A . G 3 HOH 49 249 152 HOH HOH A . G 3 HOH 50 250 153 HOH HOH A . G 3 HOH 51 251 154 HOH HOH A . G 3 HOH 52 252 155 HOH HOH A . G 3 HOH 53 253 156 HOH HOH A . G 3 HOH 54 254 157 HOH HOH A . G 3 HOH 55 255 158 HOH HOH A . G 3 HOH 56 256 159 HOH HOH A . G 3 HOH 57 257 160 HOH HOH A . G 3 HOH 58 258 161 HOH HOH A . G 3 HOH 59 259 162 HOH HOH A . G 3 HOH 60 260 163 HOH HOH A . G 3 HOH 61 261 164 HOH HOH A . G 3 HOH 62 262 165 HOH HOH A . G 3 HOH 63 263 166 HOH HOH A . G 3 HOH 64 264 167 HOH HOH A . G 3 HOH 65 265 168 HOH HOH A . G 3 HOH 66 266 169 HOH HOH A . G 3 HOH 67 267 170 HOH HOH A . G 3 HOH 68 268 171 HOH HOH A . G 3 HOH 69 269 172 HOH HOH A . G 3 HOH 70 270 173 HOH HOH A . G 3 HOH 71 271 174 HOH HOH A . G 3 HOH 72 272 175 HOH HOH A . G 3 HOH 73 273 176 HOH HOH A . G 3 HOH 74 274 177 HOH HOH A . G 3 HOH 75 275 178 HOH HOH A . G 3 HOH 76 276 179 HOH HOH A . G 3 HOH 77 277 180 HOH HOH A . G 3 HOH 78 278 181 HOH HOH A . G 3 HOH 79 279 182 HOH HOH A . G 3 HOH 80 280 183 HOH HOH A . G 3 HOH 81 281 184 HOH HOH A . G 3 HOH 82 282 185 HOH HOH A . G 3 HOH 83 283 186 HOH HOH A . G 3 HOH 84 284 187 HOH HOH A . G 3 HOH 85 285 188 HOH HOH A . G 3 HOH 86 286 189 HOH HOH A . G 3 HOH 87 287 190 HOH HOH A . G 3 HOH 88 288 191 HOH HOH A . G 3 HOH 89 289 192 HOH HOH A . G 3 HOH 90 290 193 HOH HOH A . G 3 HOH 91 291 194 HOH HOH A . G 3 HOH 92 292 195 HOH HOH A . G 3 HOH 93 293 196 HOH HOH A . G 3 HOH 94 294 197 HOH HOH A . G 3 HOH 95 295 198 HOH HOH A . G 3 HOH 96 296 199 HOH HOH A . G 3 HOH 97 297 200 HOH HOH A . G 3 HOH 98 298 201 HOH HOH A . G 3 HOH 99 299 202 HOH HOH A . G 3 HOH 100 300 203 HOH HOH A . G 3 HOH 101 301 204 HOH HOH A . G 3 HOH 102 302 205 HOH HOH A . G 3 HOH 103 303 206 HOH HOH A . G 3 HOH 104 304 207 HOH HOH A . G 3 HOH 105 305 208 HOH HOH A . G 3 HOH 106 306 209 HOH HOH A . G 3 HOH 107 307 210 HOH HOH A . G 3 HOH 108 308 211 HOH HOH A . G 3 HOH 109 309 212 HOH HOH A . G 3 HOH 110 310 213 HOH HOH A . G 3 HOH 111 311 214 HOH HOH A . G 3 HOH 112 312 215 HOH HOH A . G 3 HOH 113 313 216 HOH HOH A . G 3 HOH 114 314 217 HOH HOH A . G 3 HOH 115 315 218 HOH HOH A . G 3 HOH 116 316 219 HOH HOH A . G 3 HOH 117 317 220 HOH HOH A . G 3 HOH 118 318 221 HOH HOH A . G 3 HOH 119 319 222 HOH HOH A . G 3 HOH 120 320 223 HOH HOH A . G 3 HOH 121 321 225 HOH HOH A . G 3 HOH 122 322 226 HOH HOH A . G 3 HOH 123 323 227 HOH HOH A . G 3 HOH 124 324 228 HOH HOH A . G 3 HOH 125 325 229 HOH HOH A . G 3 HOH 126 326 230 HOH HOH A . G 3 HOH 127 327 231 HOH HOH A . G 3 HOH 128 328 232 HOH HOH A . G 3 HOH 129 329 233 HOH HOH A . G 3 HOH 130 330 234 HOH HOH A . G 3 HOH 131 331 235 HOH HOH A . G 3 HOH 132 332 236 HOH HOH A . G 3 HOH 133 333 237 HOH HOH A . G 3 HOH 134 334 238 HOH HOH A . G 3 HOH 135 335 239 HOH HOH A . G 3 HOH 136 336 240 HOH HOH A . G 3 HOH 137 337 241 HOH HOH A . G 3 HOH 138 338 242 HOH HOH A . G 3 HOH 139 339 243 HOH HOH A . G 3 HOH 140 340 244 HOH HOH A . G 3 HOH 141 341 245 HOH HOH A . G 3 HOH 142 342 246 HOH HOH A . G 3 HOH 143 343 247 HOH HOH A . G 3 HOH 144 344 248 HOH HOH A . G 3 HOH 145 345 249 HOH HOH A . G 3 HOH 146 346 250 HOH HOH A . G 3 HOH 147 347 251 HOH HOH A . G 3 HOH 148 348 252 HOH HOH A . G 3 HOH 149 349 253 HOH HOH A . G 3 HOH 150 350 254 HOH HOH A . G 3 HOH 151 351 255 HOH HOH A . G 3 HOH 152 352 256 HOH HOH A . G 3 HOH 153 353 257 HOH HOH A . G 3 HOH 154 354 258 HOH HOH A . G 3 HOH 155 355 259 HOH HOH A . G 3 HOH 156 356 260 HOH HOH A . G 3 HOH 157 357 261 HOH HOH A . G 3 HOH 158 358 262 HOH HOH A . G 3 HOH 159 359 263 HOH HOH A . G 3 HOH 160 360 264 HOH HOH A . G 3 HOH 161 361 265 HOH HOH A . G 3 HOH 162 362 266 HOH HOH A . G 3 HOH 163 363 267 HOH HOH A . G 3 HOH 164 364 269 HOH HOH A . G 3 HOH 165 365 270 HOH HOH A . G 3 HOH 166 366 271 HOH HOH A . G 3 HOH 167 367 272 HOH HOH A . G 3 HOH 168 368 274 HOH HOH A . G 3 HOH 169 369 275 HOH HOH A . G 3 HOH 170 370 277 HOH HOH A . G 3 HOH 171 371 278 HOH HOH A . G 3 HOH 172 372 279 HOH HOH A . G 3 HOH 173 373 280 HOH HOH A . G 3 HOH 174 374 281 HOH HOH A . G 3 HOH 175 375 282 HOH HOH A . G 3 HOH 176 376 283 HOH HOH A . G 3 HOH 177 377 284 HOH HOH A . G 3 HOH 178 378 285 HOH HOH A . G 3 HOH 179 379 286 HOH HOH A . G 3 HOH 180 380 287 HOH HOH A . G 3 HOH 181 381 288 HOH HOH A . G 3 HOH 182 382 289 HOH HOH A . G 3 HOH 183 383 290 HOH HOH A . G 3 HOH 184 384 291 HOH HOH A . G 3 HOH 185 385 293 HOH HOH A . G 3 HOH 186 386 294 HOH HOH A . G 3 HOH 187 387 295 HOH HOH A . G 3 HOH 188 388 296 HOH HOH A . G 3 HOH 189 389 297 HOH HOH A . G 3 HOH 190 390 298 HOH HOH A . G 3 HOH 191 391 300 HOH HOH A . G 3 HOH 192 392 301 HOH HOH A . G 3 HOH 193 393 302 HOH HOH A . G 3 HOH 194 394 303 HOH HOH A . G 3 HOH 195 395 304 HOH HOH A . G 3 HOH 196 396 306 HOH HOH A . G 3 HOH 197 397 307 HOH HOH A . G 3 HOH 198 398 308 HOH HOH A . G 3 HOH 199 399 309 HOH HOH A . G 3 HOH 200 400 310 HOH HOH A . G 3 HOH 201 401 311 HOH HOH A . G 3 HOH 202 402 312 HOH HOH A . G 3 HOH 203 403 313 HOH HOH A . G 3 HOH 204 404 314 HOH HOH A . G 3 HOH 205 405 315 HOH HOH A . G 3 HOH 206 406 316 HOH HOH A . G 3 HOH 207 407 317 HOH HOH A . G 3 HOH 208 408 318 HOH HOH A . G 3 HOH 209 409 319 HOH HOH A . G 3 HOH 210 410 320 HOH HOH A . G 3 HOH 211 411 321 HOH HOH A . G 3 HOH 212 412 323 HOH HOH A . G 3 HOH 213 413 324 HOH HOH A . G 3 HOH 214 414 325 HOH HOH A . G 3 HOH 215 415 326 HOH HOH A . G 3 HOH 216 416 327 HOH HOH A . G 3 HOH 217 417 328 HOH HOH A . G 3 HOH 218 418 329 HOH HOH A . G 3 HOH 219 419 330 HOH HOH A . G 3 HOH 220 420 331 HOH HOH A . G 3 HOH 221 421 332 HOH HOH A . G 3 HOH 222 422 333 HOH HOH A . G 3 HOH 223 423 334 HOH HOH A . G 3 HOH 224 424 335 HOH HOH A . G 3 HOH 225 425 336 HOH HOH A . G 3 HOH 226 426 337 HOH HOH A . G 3 HOH 227 427 338 HOH HOH A . G 3 HOH 228 428 339 HOH HOH A . G 3 HOH 229 429 340 HOH HOH A . G 3 HOH 230 430 341 HOH HOH A . G 3 HOH 231 431 342 HOH HOH A . G 3 HOH 232 432 344 HOH HOH A . G 3 HOH 233 433 345 HOH HOH A . G 3 HOH 234 434 346 HOH HOH A . G 3 HOH 235 435 347 HOH HOH A . G 3 HOH 236 436 348 HOH HOH A . G 3 HOH 237 437 349 HOH HOH A . G 3 HOH 238 438 350 HOH HOH A . G 3 HOH 239 439 351 HOH HOH A . G 3 HOH 240 440 352 HOH HOH A . G 3 HOH 241 441 355 HOH HOH A . G 3 HOH 242 442 356 HOH HOH A . G 3 HOH 243 443 357 HOH HOH A . G 3 HOH 244 444 358 HOH HOH A . G 3 HOH 245 445 359 HOH HOH A . G 3 HOH 246 446 360 HOH HOH A . G 3 HOH 247 447 361 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 MOLREP phasing . ? 2 PHENIX refinement '(PHENIX.REFINE: 1.7.3_927)' ? 3 MOSFLM 'data reduction' . ? 4 # _cell.entry_id 4RBQ _cell.length_a 42.890 _cell.length_b 42.890 _cell.length_c 266.936 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RBQ _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4RBQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;50 mM sodium cacodylate, pH 6.5, 200 mM potassium chloride, 75 mM magnesium acetate, 900 mM lithium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 295K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-05-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'side scattering I-beam bent single crystal, asymmetric cut 4.965 degrees' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength 0.97946 _diffrn_source.pdbx_wavelength_list 0.97946 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4RBQ _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 36.8 _reflns.d_resolution_high 1.050 _reflns.number_obs 45101 _reflns.number_all 45101 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rsym_value 0.057 _reflns.pdbx_netI_over_sigmaI 20.1 _reflns.B_iso_Wilson_estimate 9.50 _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.050 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4RBQ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 44972 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.23 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.790 _refine.ls_d_res_high 1.050 _refine.ls_percent_reflns_obs 99.26 _refine.ls_R_factor_obs 0.1312 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1307 _refine.ls_R_factor_R_free 0.1537 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 2.05 _refine.ls_number_reflns_R_free 921 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 1.00070 _refine.aniso_B[2][2] 1.00070 _refine.aniso_B[3][3] -2.00130 _refine.aniso_B[1][2] -0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'IDEAL A-FORM RNA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.10 _refine.pdbx_overall_phase_error 16.19 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 675 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 247 _refine_hist.number_atoms_total 927 _refine_hist.d_res_high 1.050 _refine_hist.d_res_low 36.790 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 754 'X-RAY DIFFRACTION' ? f_angle_d 0.898 ? ? 1172 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 5.895 ? ? 380 'X-RAY DIFFRACTION' ? f_chiral_restr 0.034 ? ? 159 'X-RAY DIFFRACTION' ? f_plane_restr 0.012 ? ? 32 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.0500 1.0809 6876 0.2776 99.00 0.2600 . . 163 . . . . 'X-RAY DIFFRACTION' . 1.0809 1.1158 6998 0.2016 100.00 0.2098 . . 117 . . . . 'X-RAY DIFFRACTION' . 1.1158 1.1557 6999 0.1643 100.00 0.2251 . . 124 . . . . 'X-RAY DIFFRACTION' . 1.1557 1.2020 6928 0.1447 100.00 0.1575 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.2020 1.2567 6994 0.1328 100.00 0.1778 . . 164 . . . . 'X-RAY DIFFRACTION' . 1.2567 1.3229 6922 0.1367 100.00 0.1657 . . 140 . . . . 'X-RAY DIFFRACTION' . 1.3229 1.4058 6953 0.1305 100.00 0.1616 . . 154 . . . . 'X-RAY DIFFRACTION' . 1.4058 1.5143 7007 0.1221 100.00 0.1526 . . 148 . . . . 'X-RAY DIFFRACTION' . 1.5143 1.6667 6963 0.1196 100.00 0.1250 . . 144 . . . . 'X-RAY DIFFRACTION' . 1.6667 1.9079 6950 0.1141 100.00 0.1320 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.9079 2.4037 6769 0.1288 97.00 0.1607 . . 160 . . . . 'X-RAY DIFFRACTION' . 2.4037 36.8122 6804 0.1251 97.00 0.1486 . . 138 . . . . # _database_PDB_matrix.entry_id 4RBQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4RBQ _struct.title '32 base pair oligo(U) RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4RBQ _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;double helix, oligoU, 3' U-tail, atomic resolution, A-form RNA, Trypanosome RNA editing substrate, mitochondrion, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4RBQ _struct_ref.pdbx_db_accession 4RBQ _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code AGAGAAGAAAGGGAAAUUUUUUUUUUUUUUUU _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4RBQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 32 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4RBQ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 32 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 32 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2920 ? 1 MORE -29 ? 1 'SSA (A^2)' 11420 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 10 OP1 ? ? ? 1_555 B K . K ? ? A A 10 A K 101 1_555 ? ? ? ? ? ? ? 2.862 ? ? metalc2 metalc ? ? A A 16 OP1 ? ? ? 1_555 C K . K ? ? A A 16 A K 102 1_555 ? ? ? ? ? ? ? 2.857 ? ? metalc3 metalc ? ? A U 20 "O2'" ? ? ? 1_555 F K . K ? ? A U 20 A K 105 1_555 ? ? ? ? ? ? ? 2.841 ? ? metalc4 metalc ? ? A U 21 OP1 ? ? ? 1_555 E K . K ? ? A U 21 A K 104 1_555 ? ? ? ? ? ? ? 2.869 ? ? metalc5 metalc ? ? A U 31 "O2'" ? ? ? 1_555 D K . K ? ? A U 31 A K 103 1_555 ? ? ? ? ? ? ? 2.847 ? ? metalc6 metalc ? ? A U 31 "O3'" ? ? ? 1_555 D K . K ? ? A U 31 A K 103 1_555 ? ? ? ? ? ? ? 3.413 ? ? metalc7 metalc ? ? B K . K ? ? ? 1_555 G HOH . O B ? A K 101 A HOH 432 1_555 ? ? ? ? ? ? ? 3.152 ? ? metalc8 metalc ? ? B K . K ? ? ? 1_555 G HOH . O A ? A K 101 A HOH 432 1_555 ? ? ? ? ? ? ? 3.228 ? ? metalc9 metalc ? ? C K . K ? ? ? 1_555 G HOH . O ? ? A K 102 A HOH 320 1_555 ? ? ? ? ? ? ? 2.947 ? ? metalc10 metalc ? ? E K . K ? ? ? 1_555 G HOH . O ? ? A K 104 A HOH 404 1_555 ? ? ? ? ? ? ? 3.489 ? ? metalc11 metalc ? ? F K . K ? ? ? 1_555 G HOH . O ? ? A K 105 A HOH 225 1_555 ? ? ? ? ? ? ? 3.251 ? ? hydrog1 hydrog ? ? A A 1 N1 ? ? ? 1_555 A U 32 N3 ? ? A A 1 A U 32 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 1 N6 ? ? ? 1_555 A U 32 O4 ? ? A A 1 A U 32 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 31 O2 ? ? A G 2 A U 31 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 31 N3 ? ? A G 2 A U 31 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 30 N3 ? ? A A 3 A U 30 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 30 O4 ? ? A A 3 A U 30 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 A U 29 O2 ? ? A G 4 A U 29 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A G 4 O6 ? ? ? 1_555 A U 29 N3 ? ? A G 4 A U 29 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 5 A U 28 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 5 A U 28 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 6 A U 27 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 6 A U 27 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 N1 ? ? ? 1_555 A U 26 O2 ? ? A G 7 A U 26 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A G 7 O6 ? ? ? 1_555 A U 26 N3 ? ? A G 7 A U 26 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 25 N3 ? ? A A 8 A U 25 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 25 O4 ? ? A A 8 A U 25 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 24 N3 ? ? A A 9 A U 24 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 24 O4 ? ? A A 9 A U 24 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 23 N3 ? ? A A 10 A U 23 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 23 O4 ? ? A A 10 A U 23 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 N1 ? ? ? 1_555 A U 22 O2 ? ? A G 11 A U 22 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A G 11 O6 ? ? ? 1_555 A U 22 N3 ? ? A G 11 A U 22 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 A U 21 O2 ? ? A G 12 A U 21 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A G 12 O6 ? ? ? 1_555 A U 21 N3 ? ? A G 12 A U 21 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A G 13 N1 ? ? ? 1_555 A U 20 O2 ? ? A G 13 A U 20 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A G 13 O6 ? ? ? 1_555 A U 20 N3 ? ? A G 13 A U 20 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 19 N3 ? ? A A 14 A U 19 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 19 O4 ? ? A A 14 A U 19 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 18 N3 ? ? A A 15 A U 18 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 18 O4 ? ? A A 15 A U 18 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 17 N3 ? ? A A 16 A U 17 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 17 O4 ? ? A A 16 A U 17 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 16 N1 ? ? A U 17 A A 16 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 16 N6 ? ? A U 17 A A 16 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 15 N1 ? ? A U 18 A A 15 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 15 N6 ? ? A U 18 A A 15 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 14 N1 ? ? A U 19 A A 14 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 19 O4 ? ? ? 1_555 A A 14 N6 ? ? A U 19 A A 14 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 20 N3 ? ? ? 1_555 A G 13 O6 ? ? A U 20 A G 13 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog40 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 13 N1 ? ? A U 20 A G 13 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog41 hydrog ? ? A U 21 N3 ? ? ? 1_555 A G 12 O6 ? ? A U 21 A G 12 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog42 hydrog ? ? A U 21 O2 ? ? ? 1_555 A G 12 N1 ? ? A U 21 A G 12 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog43 hydrog ? ? A U 22 N3 ? ? ? 1_555 A G 11 O6 ? ? A U 22 A G 11 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog44 hydrog ? ? A U 22 O2 ? ? ? 1_555 A G 11 N1 ? ? A U 22 A G 11 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? A U 23 N3 ? ? ? 1_555 A A 10 N1 ? ? A U 23 A A 10 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 23 O4 ? ? ? 1_555 A A 10 N6 ? ? A U 23 A A 10 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 24 N3 ? ? ? 1_555 A A 9 N1 ? ? A U 24 A A 9 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 24 O4 ? ? ? 1_555 A A 9 N6 ? ? A U 24 A A 9 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 25 N3 ? ? ? 1_555 A A 8 N1 ? ? A U 25 A A 8 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A U 25 O4 ? ? ? 1_555 A A 8 N6 ? ? A U 25 A A 8 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 26 N3 ? ? ? 1_555 A G 7 O6 ? ? A U 26 A G 7 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog52 hydrog ? ? A U 26 O2 ? ? ? 1_555 A G 7 N1 ? ? A U 26 A G 7 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog53 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 6 N1 ? ? A U 27 A A 6 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 6 N6 ? ? A U 27 A A 6 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 5 N1 ? ? A U 28 A A 5 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 5 N6 ? ? A U 28 A A 5 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 29 N3 ? ? ? 1_555 A G 4 O6 ? ? A U 29 A G 4 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog58 hydrog ? ? A U 29 O2 ? ? ? 1_555 A G 4 N1 ? ? A U 29 A G 4 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog59 hydrog ? ? A U 30 N3 ? ? ? 1_555 A A 3 N1 ? ? A U 30 A A 3 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 30 O4 ? ? ? 1_555 A A 3 N6 ? ? A U 30 A A 3 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 31 N3 ? ? ? 1_555 A G 2 O6 ? ? A U 31 A G 2 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog62 hydrog ? ? A U 31 O2 ? ? ? 1_555 A G 2 N1 ? ? A U 31 A G 2 5_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog63 hydrog ? ? A U 32 N3 ? ? ? 1_555 A A 1 N1 ? ? A U 32 A A 1 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 32 O4 ? ? ? 1_555 A A 1 N6 ? ? A U 32 A A 1 5_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 10 ? A A 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O B G HOH . ? A HOH 432 ? 1_555 67.5 ? 2 OP1 ? A A 10 ? A A 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O A G HOH . ? A HOH 432 ? 1_555 92.5 ? 3 O B G HOH . ? A HOH 432 ? 1_555 K ? B K . ? A K 101 ? 1_555 O A G HOH . ? A HOH 432 ? 1_555 35.6 ? 4 OP1 ? A A 16 ? A A 16 ? 1_555 K ? C K . ? A K 102 ? 1_555 O ? G HOH . ? A HOH 320 ? 1_555 70.2 ? 5 "O2'" ? A U 20 ? A U 20 ? 1_555 K ? F K . ? A K 105 ? 1_555 O ? G HOH . ? A HOH 225 ? 1_555 71.1 ? 6 OP1 ? A U 21 ? A U 21 ? 1_555 K ? E K . ? A K 104 ? 1_555 O ? G HOH . ? A HOH 404 ? 1_555 49.6 ? 7 "O2'" ? A U 31 ? A U 31 ? 1_555 K ? D K . ? A K 103 ? 1_555 "O3'" ? A U 31 ? A U 31 ? 1_555 52.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 3 'BINDING SITE FOR RESIDUE K A 101' AC2 Software A K 102 ? 6 'BINDING SITE FOR RESIDUE K A 102' AC3 Software A K 103 ? 3 'BINDING SITE FOR RESIDUE K A 103' AC4 Software A K 104 ? 3 'BINDING SITE FOR RESIDUE K A 104' AC5 Software A K 105 ? 3 'BINDING SITE FOR RESIDUE K A 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 A A 10 ? A A 10 . ? 1_555 ? 2 AC1 3 A A 10 ? A A 10 . ? 3_665 ? 3 AC1 3 A A 10 ? A A 10 . ? 2_655 ? 4 AC2 6 A A 16 ? A A 16 . ? 2_545 ? 5 AC2 6 A A 16 ? A A 16 . ? 3_655 ? 6 AC2 6 A A 16 ? A A 16 . ? 1_555 ? 7 AC2 6 HOH G . ? HOH A 320 . ? 1_555 ? 8 AC2 6 HOH G . ? HOH A 320 . ? 3_655 ? 9 AC2 6 HOH G . ? HOH A 320 . ? 2_545 ? 10 AC3 3 U A 31 ? U A 31 . ? 1_555 ? 11 AC3 3 U A 31 ? U A 31 . ? 3_665 ? 12 AC3 3 U A 31 ? U A 31 . ? 2_655 ? 13 AC4 3 U A 21 ? U A 21 . ? 1_555 ? 14 AC4 3 U A 21 ? U A 21 . ? 3_665 ? 15 AC4 3 U A 21 ? U A 21 . ? 2_655 ? 16 AC5 3 U A 20 ? U A 20 . ? 1_555 ? 17 AC5 3 U A 20 ? U A 20 . ? 3_665 ? 18 AC5 3 U A 20 ? U A 20 . ? 2_655 ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A K 101 ? B K . 2 1 A K 102 ? C K . 3 1 A K 103 ? D K . 4 1 A K 104 ? E K . 5 1 A K 105 ? F K . 6 1 A HOH 202 ? G HOH . 7 1 A HOH 205 ? G HOH . 8 1 A HOH 212 ? G HOH . 9 1 A HOH 216 ? G HOH . 10 1 A HOH 221 ? G HOH . 11 1 A HOH 225 ? G HOH . 12 1 A HOH 226 ? G HOH . 13 1 A HOH 319 ? G HOH . 14 1 A HOH 361 ? G HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 G OP3 O N N 38 G P P N N 39 G OP1 O N N 40 G OP2 O N N 41 G "O5'" O N N 42 G "C5'" C N N 43 G "C4'" C N R 44 G "O4'" O N N 45 G "C3'" C N S 46 G "O3'" O N N 47 G "C2'" C N R 48 G "O2'" O N N 49 G "C1'" C N R 50 G N9 N Y N 51 G C8 C Y N 52 G N7 N Y N 53 G C5 C Y N 54 G C6 C N N 55 G O6 O N N 56 G N1 N N N 57 G C2 C N N 58 G N2 N N N 59 G N3 N N N 60 G C4 C Y N 61 G HOP3 H N N 62 G HOP2 H N N 63 G "H5'" H N N 64 G "H5''" H N N 65 G "H4'" H N N 66 G "H3'" H N N 67 G "HO3'" H N N 68 G "H2'" H N N 69 G "HO2'" H N N 70 G "H1'" H N N 71 G H8 H N N 72 G H1 H N N 73 G H21 H N N 74 G H22 H N N 75 HOH O O N N 76 HOH H1 H N N 77 HOH H2 H N N 78 K K K N N 79 U OP3 O N N 80 U P P N N 81 U OP1 O N N 82 U OP2 O N N 83 U "O5'" O N N 84 U "C5'" C N N 85 U "C4'" C N R 86 U "O4'" O N N 87 U "C3'" C N S 88 U "O3'" O N N 89 U "C2'" C N R 90 U "O2'" O N N 91 U "C1'" C N R 92 U N1 N N N 93 U C2 C N N 94 U O2 O N N 95 U N3 N N N 96 U C4 C N N 97 U O4 O N N 98 U C5 C N N 99 U C6 C N N 100 U HOP3 H N N 101 U HOP2 H N N 102 U "H5'" H N N 103 U "H5''" H N N 104 U "H4'" H N N 105 U "H3'" H N N 106 U "HO3'" H N N 107 U "H2'" H N N 108 U "HO2'" H N N 109 U "H1'" H N N 110 U H3 H N N 111 U H5 H N N 112 U H6 H N N 113 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 G OP3 P sing N N 40 G OP3 HOP3 sing N N 41 G P OP1 doub N N 42 G P OP2 sing N N 43 G P "O5'" sing N N 44 G OP2 HOP2 sing N N 45 G "O5'" "C5'" sing N N 46 G "C5'" "C4'" sing N N 47 G "C5'" "H5'" sing N N 48 G "C5'" "H5''" sing N N 49 G "C4'" "O4'" sing N N 50 G "C4'" "C3'" sing N N 51 G "C4'" "H4'" sing N N 52 G "O4'" "C1'" sing N N 53 G "C3'" "O3'" sing N N 54 G "C3'" "C2'" sing N N 55 G "C3'" "H3'" sing N N 56 G "O3'" "HO3'" sing N N 57 G "C2'" "O2'" sing N N 58 G "C2'" "C1'" sing N N 59 G "C2'" "H2'" sing N N 60 G "O2'" "HO2'" sing N N 61 G "C1'" N9 sing N N 62 G "C1'" "H1'" sing N N 63 G N9 C8 sing Y N 64 G N9 C4 sing Y N 65 G C8 N7 doub Y N 66 G C8 H8 sing N N 67 G N7 C5 sing Y N 68 G C5 C6 sing N N 69 G C5 C4 doub Y N 70 G C6 O6 doub N N 71 G C6 N1 sing N N 72 G N1 C2 sing N N 73 G N1 H1 sing N N 74 G C2 N2 sing N N 75 G C2 N3 doub N N 76 G N2 H21 sing N N 77 G N2 H22 sing N N 78 G N3 C4 sing N N 79 HOH O H1 sing N N 80 HOH O H2 sing N N 81 U OP3 P sing N N 82 U OP3 HOP3 sing N N 83 U P OP1 doub N N 84 U P OP2 sing N N 85 U P "O5'" sing N N 86 U OP2 HOP2 sing N N 87 U "O5'" "C5'" sing N N 88 U "C5'" "C4'" sing N N 89 U "C5'" "H5'" sing N N 90 U "C5'" "H5''" sing N N 91 U "C4'" "O4'" sing N N 92 U "C4'" "C3'" sing N N 93 U "C4'" "H4'" sing N N 94 U "O4'" "C1'" sing N N 95 U "C3'" "O3'" sing N N 96 U "C3'" "C2'" sing N N 97 U "C3'" "H3'" sing N N 98 U "O3'" "HO3'" sing N N 99 U "C2'" "O2'" sing N N 100 U "C2'" "C1'" sing N N 101 U "C2'" "H2'" sing N N 102 U "O2'" "HO2'" sing N N 103 U "C1'" N1 sing N N 104 U "C1'" "H1'" sing N N 105 U N1 C2 sing N N 106 U N1 C6 sing N N 107 U C2 O2 doub N N 108 U C2 N3 sing N N 109 U N3 C4 sing N N 110 U N3 H3 sing N N 111 U C4 O4 doub N N 112 U C4 C5 sing N N 113 U C5 C6 doub N N 114 U C5 H5 sing N N 115 U C6 H6 sing N N 116 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4RBQ 'a-form double helix' 4RBQ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 1 1_555 A U 32 5_555 -0.131 -0.101 -0.431 -14.972 -0.658 4.472 1 A_A1:U32_A A 1 ? A 32 ? 20 1 1 A G 2 1_555 A U 31 5_555 -2.354 -0.570 -0.050 -5.138 -11.060 -2.499 2 A_G2:U31_A A 2 ? A 31 ? 28 1 1 A A 3 1_555 A U 30 5_555 0.027 -0.132 -0.160 -6.065 -10.587 3.141 3 A_A3:U30_A A 3 ? A 30 ? 20 1 1 A G 4 1_555 A U 29 5_555 -2.410 -0.612 -0.135 -6.637 -10.600 -3.186 4 A_G4:U29_A A 4 ? A 29 ? 28 1 1 A A 5 1_555 A U 28 5_555 0.072 -0.089 -0.031 -0.736 -7.946 -0.525 5 A_A5:U28_A A 5 ? A 28 ? 20 1 1 A A 6 1_555 A U 27 5_555 -0.016 -0.156 -0.100 -3.250 -11.443 1.586 6 A_A6:U27_A A 6 ? A 27 ? 20 1 1 A G 7 1_555 A U 26 5_555 -2.332 -0.562 -0.064 -3.228 -9.652 -2.476 7 A_G7:U26_A A 7 ? A 26 ? 28 1 1 A A 8 1_555 A U 25 5_555 0.043 -0.104 -0.142 -0.871 -7.661 1.253 8 A_A8:U25_A A 8 ? A 25 ? 20 1 1 A A 9 1_555 A U 24 5_555 0.007 -0.068 -0.057 -5.264 -12.362 4.233 9 A_A9:U24_A A 9 ? A 24 ? 20 1 1 A A 10 1_555 A U 23 5_555 -0.037 -0.144 -0.054 -4.327 -12.368 3.187 10 A_A10:U23_A A 10 ? A 23 ? 20 1 1 A G 11 1_555 A U 22 5_555 -2.198 -0.607 -0.143 -4.418 -12.068 -3.522 11 A_G11:U22_A A 11 ? A 22 ? 28 1 1 A G 12 1_555 A U 21 5_555 -2.097 -0.576 -0.180 -6.134 -10.634 -7.155 12 A_G12:U21_A A 12 ? A 21 ? 28 1 1 A G 13 1_555 A U 20 5_555 -2.352 -0.548 -0.088 -3.881 -8.685 -2.064 13 A_G13:U20_A A 13 ? A 20 ? 28 1 1 A A 14 1_555 A U 19 5_555 -0.022 -0.114 -0.172 -1.010 -8.357 2.178 14 A_A14:U19_A A 14 ? A 19 ? 20 1 1 A A 15 1_555 A U 18 5_555 0.089 -0.094 -0.024 -2.074 -12.494 4.762 15 A_A15:U18_A A 15 ? A 18 ? 20 1 1 A A 16 1_555 A U 17 5_555 -0.038 -0.093 0.015 -1.478 -13.159 1.970 16 A_A16:U17_A A 16 ? A 17 ? 20 1 1 A U 17 1_555 A A 16 5_555 0.038 -0.093 0.015 1.478 -13.159 1.970 17 A_U17:A16_A A 17 ? A 16 ? 20 1 1 A U 18 1_555 A A 15 5_555 -0.089 -0.094 -0.024 2.074 -12.494 4.762 18 A_U18:A15_A A 18 ? A 15 ? 20 1 1 A U 19 1_555 A A 14 5_555 0.022 -0.114 -0.172 1.010 -8.357 2.178 19 A_U19:A14_A A 19 ? A 14 ? 20 1 1 A U 20 1_555 A G 13 5_555 2.352 -0.548 -0.088 3.881 -8.685 -2.064 20 A_U20:G13_A A 20 ? A 13 ? 28 1 1 A U 21 1_555 A G 12 5_555 2.097 -0.576 -0.180 6.134 -10.634 -7.155 21 A_U21:G12_A A 21 ? A 12 ? 28 1 1 A U 22 1_555 A G 11 5_555 2.198 -0.607 -0.143 4.418 -12.068 -3.522 22 A_U22:G11_A A 22 ? A 11 ? 28 1 1 A U 23 1_555 A A 10 5_555 0.037 -0.144 -0.054 4.327 -12.368 3.187 23 A_U23:A10_A A 23 ? A 10 ? 20 1 1 A U 24 1_555 A A 9 5_555 -0.007 -0.068 -0.057 5.264 -12.362 4.233 24 A_U24:A9_A A 24 ? A 9 ? 20 1 1 A U 25 1_555 A A 8 5_555 -0.043 -0.104 -0.142 0.871 -7.661 1.253 25 A_U25:A8_A A 25 ? A 8 ? 20 1 1 A U 26 1_555 A G 7 5_555 2.332 -0.562 -0.064 3.228 -9.652 -2.476 26 A_U26:G7_A A 26 ? A 7 ? 28 1 1 A U 27 1_555 A A 6 5_555 0.016 -0.156 -0.100 3.250 -11.443 1.586 27 A_U27:A6_A A 27 ? A 6 ? 20 1 1 A U 28 1_555 A A 5 5_555 -0.072 -0.089 -0.031 0.736 -7.946 -0.525 28 A_U28:A5_A A 28 ? A 5 ? 20 1 1 A U 29 1_555 A G 4 5_555 2.410 -0.612 -0.135 6.637 -10.600 -3.186 29 A_U29:G4_A A 29 ? A 4 ? 28 1 1 A U 30 1_555 A A 3 5_555 -0.027 -0.132 -0.160 6.065 -10.587 3.141 30 A_U30:A3_A A 30 ? A 3 ? 20 1 1 A U 31 1_555 A G 2 5_555 2.354 -0.570 -0.050 5.138 -11.060 -2.499 31 A_U31:G2_A A 31 ? A 2 ? 28 1 1 A U 32 1_555 A A 1 5_555 0.131 -0.101 -0.431 14.972 -0.658 4.472 32 A_U32:A1_A A 32 ? A 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 1 1_555 A U 32 5_555 A G 2 1_555 A U 31 5_555 -0.140 -2.243 3.006 -1.700 4.163 18.527 -8.581 -0.314 2.449 12.689 5.180 19.060 1 AA_A1G2:U31U32_AA A 1 ? A 32 ? A 2 ? A 31 ? 1 A G 2 1_555 A U 31 5_555 A A 3 1_555 A U 30 5_555 0.059 -1.271 3.375 -0.717 7.519 41.436 -2.546 -0.156 3.107 10.521 1.003 42.089 2 AA_G2A3:U30U31_AA A 2 ? A 31 ? A 3 ? A 30 ? 1 A A 3 1_555 A U 30 5_555 A G 4 1_555 A U 29 5_555 0.345 -2.108 3.129 0.224 12.004 20.789 -8.142 -0.773 1.677 30.230 -0.564 23.974 3 AA_A3G4:U29U30_AA A 3 ? A 30 ? A 4 ? A 29 ? 1 A G 4 1_555 A U 29 5_555 A A 5 1_555 A U 28 5_555 0.054 -1.195 3.195 -0.702 2.943 41.621 -1.977 -0.147 3.106 4.135 0.987 41.726 4 AA_G4A5:U28U29_AA A 4 ? A 29 ? A 5 ? A 28 ? 1 A A 5 1_555 A U 28 5_555 A A 6 1_555 A U 27 5_555 0.188 -1.632 3.329 1.799 4.667 31.047 -3.871 -0.016 3.063 8.649 -3.335 31.438 5 AA_A5A6:U27U28_AA A 5 ? A 28 ? A 6 ? A 27 ? 1 A A 6 1_555 A U 27 5_555 A G 7 1_555 A U 26 5_555 -0.161 -1.922 3.062 -3.339 9.031 24.130 -6.364 -0.411 2.212 20.586 7.610 25.953 6 AA_A6G7:U26U27_AA A 6 ? A 27 ? A 7 ? A 26 ? 1 A G 7 1_555 A U 26 5_555 A A 8 1_555 A U 25 5_555 0.066 -1.287 3.322 -1.220 7.431 39.578 -2.695 -0.231 3.038 10.855 1.782 40.260 7 AA_G7A8:U25U26_AA A 7 ? A 26 ? A 8 ? A 25 ? 1 A A 8 1_555 A U 25 5_555 A A 9 1_555 A U 24 5_555 0.625 -1.647 3.379 2.684 11.269 30.648 -4.785 -0.665 2.668 20.427 -4.866 32.716 8 AA_A8A9:U24U25_AA A 8 ? A 25 ? A 9 ? A 24 ? 1 A A 9 1_555 A U 24 5_555 A A 10 1_555 A U 23 5_555 -0.213 -1.256 3.243 1.238 5.648 32.179 -3.168 0.584 2.976 10.088 -2.211 32.681 9 AA_A9A10:U23U24_AA A 9 ? A 24 ? A 10 ? A 23 ? 1 A A 10 1_555 A U 23 5_555 A G 11 1_555 A U 22 5_555 -0.169 -1.691 3.092 -1.181 9.317 24.505 -5.881 0.100 2.309 20.991 2.660 26.217 10 AA_A10G11:U22U23_AA A 10 ? A 23 ? A 11 ? A 22 ? 1 A G 11 1_555 A U 22 5_555 A G 12 1_555 A U 21 5_555 0.041 -1.801 3.255 -2.031 5.682 32.213 -4.122 -0.405 2.896 10.130 3.621 32.759 11 AA_G11G12:U21U22_AA A 11 ? A 22 ? A 12 ? A 21 ? 1 A G 12 1_555 A U 21 5_555 A G 13 1_555 A U 20 5_555 0.558 -1.907 3.107 -3.499 8.080 32.499 -4.447 -1.462 2.502 14.117 6.114 33.639 12 AA_G12G13:U20U21_AA A 12 ? A 21 ? A 13 ? A 20 ? 1 A G 13 1_555 A U 20 5_555 A A 14 1_555 A U 19 5_555 0.020 -1.343 3.301 -1.170 8.268 39.443 -2.856 -0.158 2.970 12.086 1.710 40.283 13 AA_G13A14:U19U20_AA A 13 ? A 20 ? A 14 ? A 19 ? 1 A A 14 1_555 A U 19 5_555 A A 15 1_555 A U 18 5_555 0.488 -1.390 3.305 1.726 10.621 30.921 -4.209 -0.583 2.715 19.206 -3.121 32.697 14 AA_A14A15:U18U19_AA A 14 ? A 19 ? A 15 ? A 18 ? 1 A A 15 1_555 A U 18 5_555 A A 16 1_555 A U 17 5_555 -0.190 -1.394 3.211 1.094 6.623 32.376 -3.503 0.508 2.870 11.720 -1.936 33.046 15 AA_A15A16:U17U18_AA A 15 ? A 18 ? A 16 ? A 17 ? 1 A A 16 1_555 A U 17 5_555 A U 17 1_555 A A 16 5_555 0.000 -1.485 3.201 0.000 4.845 30.796 -3.635 0.000 2.939 9.053 0.000 31.166 16 AA_A16U17:A16U17_AA A 16 ? A 17 ? A 17 ? A 16 ? 1 A U 17 1_555 A A 16 5_555 A U 18 1_555 A A 15 5_555 0.190 -1.394 3.211 -1.094 6.623 32.376 -3.503 -0.508 2.870 11.720 1.936 33.046 17 AA_U17U18:A15A16_AA A 17 ? A 16 ? A 18 ? A 15 ? 1 A U 18 1_555 A A 15 5_555 A U 19 1_555 A A 14 5_555 -0.488 -1.390 3.305 -1.726 10.621 30.921 -4.209 0.583 2.715 19.206 3.121 32.697 18 AA_U18U19:A14A15_AA A 18 ? A 15 ? A 19 ? A 14 ? 1 A U 19 1_555 A A 14 5_555 A U 20 1_555 A G 13 5_555 -0.020 -1.343 3.301 1.170 8.268 39.443 -2.856 0.158 2.970 12.086 -1.710 40.283 19 AA_U19U20:G13A14_AA A 19 ? A 14 ? A 20 ? A 13 ? 1 A U 20 1_555 A G 13 5_555 A U 21 1_555 A G 12 5_555 -0.558 -1.907 3.107 3.499 8.080 32.499 -4.447 1.462 2.502 14.117 -6.114 33.639 20 AA_U20U21:G12G13_AA A 20 ? A 13 ? A 21 ? A 12 ? 1 A U 21 1_555 A G 12 5_555 A U 22 1_555 A G 11 5_555 -0.041 -1.801 3.255 2.031 5.682 32.213 -4.122 0.405 2.896 10.130 -3.621 32.759 21 AA_U21U22:G11G12_AA A 21 ? A 12 ? A 22 ? A 11 ? 1 A U 22 1_555 A G 11 5_555 A U 23 1_555 A A 10 5_555 0.169 -1.691 3.092 1.181 9.317 24.505 -5.881 -0.100 2.309 20.991 -2.660 26.217 22 AA_U22U23:A10G11_AA A 22 ? A 11 ? A 23 ? A 10 ? 1 A U 23 1_555 A A 10 5_555 A U 24 1_555 A A 9 5_555 0.213 -1.256 3.243 -1.238 5.648 32.179 -3.168 -0.584 2.976 10.088 2.211 32.681 23 AA_U23U24:A9A10_AA A 23 ? A 10 ? A 24 ? A 9 ? 1 A U 24 1_555 A A 9 5_555 A U 25 1_555 A A 8 5_555 -0.625 -1.647 3.379 -2.684 11.269 30.648 -4.785 0.665 2.668 20.427 4.866 32.716 24 AA_U24U25:A8A9_AA A 24 ? A 9 ? A 25 ? A 8 ? 1 A U 25 1_555 A A 8 5_555 A U 26 1_555 A G 7 5_555 -0.066 -1.287 3.322 1.220 7.431 39.578 -2.695 0.231 3.038 10.855 -1.782 40.260 25 AA_U25U26:G7A8_AA A 25 ? A 8 ? A 26 ? A 7 ? 1 A U 26 1_555 A G 7 5_555 A U 27 1_555 A A 6 5_555 0.161 -1.922 3.062 3.339 9.031 24.130 -6.364 0.411 2.212 20.586 -7.610 25.953 26 AA_U26U27:A6G7_AA A 26 ? A 7 ? A 27 ? A 6 ? 1 A U 27 1_555 A A 6 5_555 A U 28 1_555 A A 5 5_555 -0.188 -1.632 3.329 -1.799 4.667 31.047 -3.871 0.016 3.063 8.649 3.335 31.438 27 AA_U27U28:A5A6_AA A 27 ? A 6 ? A 28 ? A 5 ? 1 A U 28 1_555 A A 5 5_555 A U 29 1_555 A G 4 5_555 -0.054 -1.195 3.195 0.702 2.943 41.621 -1.977 0.147 3.106 4.135 -0.987 41.726 28 AA_U28U29:G4A5_AA A 28 ? A 5 ? A 29 ? A 4 ? 1 A U 29 1_555 A G 4 5_555 A U 30 1_555 A A 3 5_555 -0.345 -2.108 3.129 -0.224 12.004 20.789 -8.142 0.773 1.677 30.230 0.564 23.974 29 AA_U29U30:A3G4_AA A 29 ? A 4 ? A 30 ? A 3 ? 1 A U 30 1_555 A A 3 5_555 A U 31 1_555 A G 2 5_555 -0.059 -1.271 3.375 0.717 7.519 41.436 -2.546 0.156 3.107 10.521 -1.003 42.089 30 AA_U30U31:G2A3_AA A 30 ? A 3 ? A 31 ? A 2 ? 1 A U 31 1_555 A G 2 5_555 A U 32 1_555 A A 1 5_555 0.140 -2.243 3.006 1.700 4.163 18.527 -8.581 0.314 2.449 12.689 -5.180 19.060 31 AA_U31U32:A1G2_AA A 31 ? A 2 ? A 32 ? A 1 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'IDEAL A-FORM RNA' # _atom_sites.entry_id 4RBQ _atom_sites.fract_transf_matrix[1][1] 0.023315 _atom_sites.fract_transf_matrix[1][2] 0.013461 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026922 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003746 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H K N O P # loop_