HEADER ANTIMICROBIAL PROTEIN 13-SEP-14 4RBW TITLE CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN 5, HD5 (THR7ARG GLU21ARG TITLE 2 MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFENSIN-5; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HD5(63-94); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS MUTANT T7R E21R-HD5, BETA-SHEET, ANTIMICROBIAL PEPTIDE, PANETH CELLS KEYWDS 2 DEFENSIN, HUMAN ALPHA-DEFENSIN, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.PAZGIER,N.GOHAIN,W.D.TOLBERT REVDAT 2 20-SEP-23 4RBW 1 REMARK SEQADV REVDAT 1 29-JUL-15 4RBW 0 JRNL AUTH C.WANG,M.SHEN,N.GOHAIN,W.D.TOLBERT,F.CHEN,N.ZHANG,K.YANG, JRNL AUTH 2 A.WANG,Y.SU,T.CHENG,J.ZHAO,M.PAZGIER,J.WANG JRNL TITL DESIGN OF A POTENT ANTIBIOTIC PEPTIDE BASED ON THE ACTIVE JRNL TITL 2 REGION OF HUMAN DEFENSIN 5. JRNL REF J.MED.CHEM. V. 58 3083 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25782105 JRNL DOI 10.1021/JM501824A REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 14565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1060 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.978 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1091 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1040 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1463 ; 2.070 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2349 ; 0.871 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 132 ; 7.541 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;11.691 ;13.404 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 203 ;13.945 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.413 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 158 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1165 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 302 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 522 ; 2.197 ; 2.062 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 521 ; 2.191 ; 2.060 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 650 ; 3.221 ; 3.084 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 569 ; 3.002 ; 2.527 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1593 9.2150 -1.8898 REMARK 3 T TENSOR REMARK 3 T11: 0.0066 T22: 0.0177 REMARK 3 T33: 0.0097 T12: 0.0005 REMARK 3 T13: -0.0026 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.3970 L22: 0.1631 REMARK 3 L33: 0.4221 L12: -0.0540 REMARK 3 L13: 0.1330 L23: -0.1382 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: -0.0200 S13: 0.0252 REMARK 3 S21: -0.0226 S22: -0.0187 S23: 0.0158 REMARK 3 S31: 0.0287 S32: 0.0045 S33: 0.0335 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5327 11.6683 15.8996 REMARK 3 T TENSOR REMARK 3 T11: 0.0069 T22: 0.0090 REMARK 3 T33: 0.0168 T12: 0.0007 REMARK 3 T13: 0.0048 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.5442 L22: 0.2061 REMARK 3 L33: 0.5477 L12: -0.1772 REMARK 3 L13: -0.0773 L23: -0.2438 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: 0.0304 S13: -0.0334 REMARK 3 S21: 0.0187 S22: -0.0019 S23: 0.0218 REMARK 3 S31: -0.0153 S32: -0.0041 S33: 0.0124 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 32 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9304 13.4824 25.4542 REMARK 3 T TENSOR REMARK 3 T11: 0.0083 T22: 0.0036 REMARK 3 T33: 0.0140 T12: 0.0010 REMARK 3 T13: -0.0038 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.2490 L22: 0.5136 REMARK 3 L33: 0.8952 L12: 0.2334 REMARK 3 L13: -0.0739 L23: 0.4379 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: -0.0094 S13: -0.0269 REMARK 3 S21: 0.0123 S22: -0.0002 S23: -0.0452 REMARK 3 S31: -0.0083 S32: 0.0101 S33: -0.0196 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 32 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7621 6.4117 -10.9914 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: 0.0045 REMARK 3 T33: 0.0104 T12: 0.0012 REMARK 3 T13: -0.0027 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.1923 L22: 0.6495 REMARK 3 L33: 0.6290 L12: -0.1399 REMARK 3 L13: -0.0425 L23: 0.3696 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0190 S13: 0.0038 REMARK 3 S21: -0.0028 S22: 0.0178 S23: -0.0376 REMARK 3 S31: 0.0160 S32: -0.0193 S33: -0.0179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 36.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.62300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZMP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 0.5M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.85150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 13 -0.18 78.23 REMARK 500 SER D 23 123.33 -33.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZMP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN DEFENSIN 5 REMARK 900 RELATED ID: 4E82 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MONOMERIC VARIANT OF HUMAN ALPHA-DEFENSIN 5, REMARK 900 HD5 (GLU21EME MUTANT) REMARK 900 RELATED ID: 4E83 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN 5, HD5 (LEU29NLE MUTANT) REMARK 900 RELATED ID: 4E86 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN 5, HD5 (LEU29ABA MUTANT) REMARK 900 RELATED ID: 4RBX RELATED DB: PDB DBREF 4RBW A 1 32 UNP Q01523 DEF5_HUMAN 63 94 DBREF 4RBW B 1 32 UNP Q01523 DEF5_HUMAN 63 94 DBREF 4RBW C 1 32 UNP Q01523 DEF5_HUMAN 63 94 DBREF 4RBW D 1 32 UNP Q01523 DEF5_HUMAN 63 94 SEQADV 4RBW ARG A 7 UNP Q01523 THR 69 ENGINEERED MUTATION SEQADV 4RBW ARG A 21 UNP Q01523 GLU 83 ENGINEERED MUTATION SEQADV 4RBW ARG B 7 UNP Q01523 THR 69 ENGINEERED MUTATION SEQADV 4RBW ARG B 21 UNP Q01523 GLU 83 ENGINEERED MUTATION SEQADV 4RBW ARG C 7 UNP Q01523 THR 69 ENGINEERED MUTATION SEQADV 4RBW ARG C 21 UNP Q01523 GLU 83 ENGINEERED MUTATION SEQADV 4RBW ARG D 7 UNP Q01523 THR 69 ENGINEERED MUTATION SEQADV 4RBW ARG D 21 UNP Q01523 GLU 83 ENGINEERED MUTATION SEQRES 1 A 32 ALA THR CYS TYR CYS ARG ARG GLY ARG CYS ALA THR ARG SEQRES 2 A 32 GLU SER LEU SER GLY VAL CYS ARG ILE SER GLY ARG LEU SEQRES 3 A 32 TYR ARG LEU CYS CYS ARG SEQRES 1 B 32 ALA THR CYS TYR CYS ARG ARG GLY ARG CYS ALA THR ARG SEQRES 2 B 32 GLU SER LEU SER GLY VAL CYS ARG ILE SER GLY ARG LEU SEQRES 3 B 32 TYR ARG LEU CYS CYS ARG SEQRES 1 C 32 ALA THR CYS TYR CYS ARG ARG GLY ARG CYS ALA THR ARG SEQRES 2 C 32 GLU SER LEU SER GLY VAL CYS ARG ILE SER GLY ARG LEU SEQRES 3 C 32 TYR ARG LEU CYS CYS ARG SEQRES 1 D 32 ALA THR CYS TYR CYS ARG ARG GLY ARG CYS ALA THR ARG SEQRES 2 D 32 GLU SER LEU SER GLY VAL CYS ARG ILE SER GLY ARG LEU SEQRES 3 D 32 TYR ARG LEU CYS CYS ARG HET SO4 A 101 5 HET SO4 A 102 5 HET SO4 A 103 5 HET SO4 B 101 5 HET SO4 B 102 5 HET CL B 103 1 HET SO4 C 101 5 HET SO4 C 102 5 HET CL C 103 1 HET SO4 D 101 5 HET SO4 D 102 5 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 5 SO4 9(O4 S 2-) FORMUL 10 CL 2(CL 1-) FORMUL 16 HOH *75(H2 O) SHEET 1 A 6 SER A 15 ILE A 22 0 SHEET 2 A 6 ARG A 25 CYS A 31 -1 O LEU A 29 N SER A 17 SHEET 3 A 6 THR A 2 ARG A 6 -1 N ARG A 6 O ARG A 28 SHEET 4 A 6 SER D 15 ILE D 22 1 O VAL D 19 N CYS A 3 SHEET 5 A 6 ARG D 25 CYS D 31 -1 O LEU D 29 N SER D 17 SHEET 6 A 6 CYS D 3 ARG D 6 -1 N TYR D 4 O CYS D 30 SHEET 1 B 6 SER B 15 ILE B 22 0 SHEET 2 B 6 ARG B 25 CYS B 31 -1 O LEU B 29 N SER B 17 SHEET 3 B 6 THR B 2 ARG B 6 -1 N ARG B 6 O ARG B 28 SHEET 4 B 6 SER C 15 ILE C 22 1 O VAL C 19 N CYS B 3 SHEET 5 B 6 ARG C 25 CYS C 31 -1 O LEU C 29 N SER C 17 SHEET 6 B 6 CYS C 3 ARG C 6 -1 N TYR C 4 O CYS C 30 SSBOND 1 CYS A 3 CYS A 31 1555 1555 2.06 SSBOND 2 CYS A 5 CYS A 20 1555 1555 2.10 SSBOND 3 CYS A 10 CYS A 30 1555 1555 2.10 SSBOND 4 CYS B 3 CYS B 31 1555 1555 2.05 SSBOND 5 CYS B 5 CYS B 20 1555 1555 2.11 SSBOND 6 CYS B 10 CYS B 30 1555 1555 2.09 SSBOND 7 CYS C 3 CYS C 31 1555 1555 2.11 SSBOND 8 CYS C 5 CYS C 20 1555 1555 2.08 SSBOND 9 CYS C 10 CYS C 30 1555 1555 2.11 SSBOND 10 CYS D 3 CYS D 31 1555 1555 2.09 SSBOND 11 CYS D 5 CYS D 20 1555 1555 2.09 SSBOND 12 CYS D 10 CYS D 30 1555 1555 2.05 SITE 1 AC1 6 ARG A 6 ARG A 7 GLY A 8 HOH A 201 SITE 2 AC1 6 HOH A 203 HOH B 218 SITE 1 AC2 8 TYR A 4 GLY A 8 ARG A 9 ARG A 28 SITE 2 AC2 8 ALA B 11 THR B 12 HOH B 217 ARG D 21 SITE 1 AC3 6 ARG A 7 ARG A 25 ARG B 13 ARG D 21 SITE 2 AC3 6 GLY D 24 ARG D 25 SITE 1 AC4 8 ARG A 13 ARG A 32 ARG B 6 ARG B 7 SITE 2 AC4 8 GLY B 8 HOH B 202 HOH B 219 HOH B 222 SITE 1 AC5 8 ALA A 11 THR A 12 TYR B 4 GLY B 8 SITE 2 AC5 8 ARG B 9 ARG B 28 HOH B 211 ARG C 21 SITE 1 AC6 2 ARG B 21 ARG D 9 SITE 1 AC7 9 ILE B 22 SER B 23 HOH B 207 ARG C 7 SITE 2 AC7 9 TYR C 27 HOH C 208 ALA D 11 THR D 12 SITE 3 AC7 9 HOH D 205 SITE 1 AC8 7 ARG A 13 ARG B 7 ARG B 25 ARG C 21 SITE 2 AC8 7 GLY C 24 ARG C 25 HOH C 216 SITE 1 AC9 1 TYR C 4 SITE 1 BC1 10 ARG B 21 HOH B 210 HOH B 214 ARG C 6 SITE 2 BC1 10 ARG C 9 ARG D 6 ARG D 7 GLY D 8 SITE 3 BC1 10 HOH D 209 HOH D 214 SITE 1 BC2 6 ARG A 21 GLY C 8 ARG C 9 ARG D 9 SITE 2 BC2 6 ARG D 28 HOH D 202 CRYST1 20.550 51.703 50.676 90.00 96.35 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.048662 0.000000 0.005415 0.00000 SCALE2 0.000000 0.019341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019855 0.00000