HEADER SIGNALING PROTEIN 15-SEP-14 4RCA TITLE CRYSTAL STRUCTURE OF HUMAN PTPDELTA AND HUMAN SLITRK1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE DELTA, R-PTP-DELTA; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SLIT AND NTRK-LIKE PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRD; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SLITRK1, KIAA1910, LRRC12, UNQ233/PRO266; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS LEUCINE RICH-REPEAT, IG-LIKE DOMAIN, SYNAPTIC ADHESION, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.M.KIM,B.S.PARK,D.KIM,S.G.LEE REVDAT 6 06-NOV-24 4RCA 1 REMARK REVDAT 5 20-SEP-23 4RCA 1 HETSYN REVDAT 4 29-JUL-20 4RCA 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 17-JUL-19 4RCA 1 REMARK LINK REVDAT 2 26-NOV-14 4RCA 1 JRNL REVDAT 1 19-NOV-14 4RCA 0 JRNL AUTH J.W.UM,K.H.KIM,B.S.PARK,Y.CHOI,D.KIM,C.Y.KIM,S.J.KIM,M.KIM, JRNL AUTH 2 J.S.KO,S.G.LEE,G.CHOII,J.NAM,W.D.HEO,E.KIM,J.O.LEE,J.KO, JRNL AUTH 3 H.M.KIM JRNL TITL STRUCTURAL BASIS FOR LAR-RPTP/SLITRK COMPLEX-MEDIATED JRNL TITL 2 SYNAPTIC ADHESION. JRNL REF NAT COMMUN V. 5 5423 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 25394468 JRNL DOI 10.1038/NCOMMS6423 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 15094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6177 - 5.1110 0.99 2954 155 0.2283 0.2403 REMARK 3 2 5.1110 - 4.0582 1.00 2901 160 0.2246 0.2271 REMARK 3 3 4.0582 - 3.5456 0.99 2891 163 0.2601 0.2694 REMARK 3 4 3.5456 - 3.2216 0.99 2854 147 0.3083 0.3407 REMARK 3 5 3.2216 - 2.9908 0.94 2736 133 0.3848 0.3698 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.41000 REMARK 3 B22 (A**2) : -3.79000 REMARK 3 B33 (A**2) : -8.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 4378 REMARK 3 ANGLE : 0.846 5939 REMARK 3 CHIRALITY : 0.044 681 REMARK 3 PLANARITY : 0.003 782 REMARK 3 DIHEDRAL : 15.045 1648 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4RCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15130 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.991 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.590 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4RCW, 2YD6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-CL, PH 8.5, 200 MM REMARK 280 AMMONIUM SULFATE, AND 20% PEG3350 (V/V), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.09750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 321 REMARK 465 LEU A 322 REMARK 465 SER A 323 REMARK 465 ARG A 324 REMARK 465 LEU A 325 REMARK 465 VAL A 326 REMARK 465 PRO A 327 REMARK 465 ARG A 328 REMARK 465 THR B 20 REMARK 465 GLY B 21 REMARK 465 LEU B 263 REMARK 465 LYS B 264 REMARK 465 SER B 265 REMARK 465 ARG B 266 REMARK 465 LEU B 267 REMARK 465 VAL B 268 REMARK 465 PRO B 269 REMARK 465 ARG B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 170 CG OD1 ND2 REMARK 470 ASN A 172 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 94 -67.54 -135.91 REMARK 500 ARG A 189 -89.52 -109.35 REMARK 500 ASP A 281 64.35 -112.78 REMARK 500 LYS B 27 -1.43 69.31 REMARK 500 PRO B 56 151.83 -42.80 REMARK 500 HIS B 66 -103.45 -41.52 REMARK 500 MET B 89 75.35 -117.57 REMARK 500 HIS B 95 -22.87 -140.60 REMARK 500 ASN B 116 -155.55 -137.09 REMARK 500 PHE B 126 44.66 -94.22 REMARK 500 PHE B 139 76.20 51.60 REMARK 500 ARG B 143 -62.66 -129.82 REMARK 500 LEU B 156 95.68 -64.30 REMARK 500 GLU B 196 -51.05 73.69 REMARK 500 ILE B 201 71.35 -119.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 4RCA A 21 322 UNP P23468 PTPRD_HUMAN 21 322 DBREF 4RCA B 20 264 UNP Q96PX8 SLIK1_HUMAN 20 264 SEQADV 4RCA SER A 323 UNP P23468 EXPRESSION TAG SEQADV 4RCA ARG A 324 UNP P23468 EXPRESSION TAG SEQADV 4RCA LEU A 325 UNP P23468 EXPRESSION TAG SEQADV 4RCA VAL A 326 UNP P23468 EXPRESSION TAG SEQADV 4RCA PRO A 327 UNP P23468 EXPRESSION TAG SEQADV 4RCA ARG A 328 UNP P23468 EXPRESSION TAG SEQADV 4RCA SER B 265 UNP Q96PX8 EXPRESSION TAG SEQADV 4RCA ARG B 266 UNP Q96PX8 EXPRESSION TAG SEQADV 4RCA LEU B 267 UNP Q96PX8 EXPRESSION TAG SEQADV 4RCA VAL B 268 UNP Q96PX8 EXPRESSION TAG SEQADV 4RCA PRO B 269 UNP Q96PX8 EXPRESSION TAG SEQADV 4RCA ARG B 270 UNP Q96PX8 EXPRESSION TAG SEQRES 1 A 308 GLU THR PRO PRO ARG PHE THR ARG THR PRO VAL ASP GLN SEQRES 2 A 308 THR GLY VAL SER GLY GLY VAL ALA SER PHE ILE CYS GLN SEQRES 3 A 308 ALA THR GLY ASP PRO ARG PRO LYS ILE VAL TRP ASN LYS SEQRES 4 A 308 LYS GLY LYS LYS VAL SER ASN GLN ARG PHE GLU VAL ILE SEQRES 5 A 308 GLU PHE ASP ASP GLY SER GLY SER VAL LEU ARG ILE GLN SEQRES 6 A 308 PRO LEU ARG THR PRO ARG ASP GLU ALA ILE TYR GLU CYS SEQRES 7 A 308 VAL ALA SER ASN ASN VAL GLY GLU ILE SER VAL SER THR SEQRES 8 A 308 ARG LEU THR VAL LEU ARG GLU ASP GLN ILE PRO ARG GLY SEQRES 9 A 308 PHE PRO THR ILE ASP MET GLY PRO GLN LEU LYS VAL VAL SEQRES 10 A 308 GLU ARG THR ARG THR ALA THR MET LEU CYS ALA ALA SER SEQRES 11 A 308 GLY ASN PRO ASP PRO GLU ILE THR TRP PHE LYS ASP PHE SEQRES 12 A 308 LEU PRO VAL ASP THR SER ASN ASN ASN GLY ARG ILE LYS SEQRES 13 A 308 GLN LEU ARG SER GLU SER ILE GLY GLY THR PRO ILE ARG SEQRES 14 A 308 GLY ALA LEU GLN ILE GLU GLN SER GLU GLU SER ASP GLN SEQRES 15 A 308 GLY LYS TYR GLU CYS VAL ALA THR ASN SER ALA GLY THR SEQRES 16 A 308 ARG TYR SER ALA PRO ALA ASN LEU TYR VAL ARG GLU LEU SEQRES 17 A 308 ARG GLU VAL ARG ARG VAL PRO PRO ARG PHE SER ILE PRO SEQRES 18 A 308 PRO THR ASN HIS GLU ILE MET PRO GLY GLY SER VAL ASN SEQRES 19 A 308 ILE THR CYS VAL ALA VAL GLY SER PRO MET PRO TYR VAL SEQRES 20 A 308 LYS TRP MET LEU GLY ALA GLU ASP LEU THR PRO GLU ASP SEQRES 21 A 308 ASP MET PRO ILE GLY ARG ASN VAL LEU GLU LEU ASN ASP SEQRES 22 A 308 VAL ARG GLN SER ALA ASN TYR THR CYS VAL ALA MET SER SEQRES 23 A 308 THR LEU GLY VAL ILE GLU ALA ILE ALA GLN ILE THR VAL SEQRES 24 A 308 LYS ALA LEU SER ARG LEU VAL PRO ARG SEQRES 1 B 251 THR GLY ASP VAL CYS LYS GLU LYS ILE CYS SER CYS ASN SEQRES 2 B 251 GLU ILE GLU GLY ASP LEU HIS VAL ASP CYS GLU LYS LYS SEQRES 3 B 251 GLY PHE THR SER LEU GLN ARG PHE THR ALA PRO THR SER SEQRES 4 B 251 GLN PHE TYR HIS LEU PHE LEU HIS GLY ASN SER LEU THR SEQRES 5 B 251 ARG LEU PHE PRO ASN GLU PHE ALA ASN PHE TYR ASN ALA SEQRES 6 B 251 VAL SER LEU HIS MET GLU ASN ASN GLY LEU HIS GLU ILE SEQRES 7 B 251 VAL PRO GLY ALA PHE LEU GLY LEU GLN LEU VAL LYS ARG SEQRES 8 B 251 LEU HIS ILE ASN ASN ASN LYS ILE LYS SER PHE ARG LYS SEQRES 9 B 251 GLN THR PHE LEU GLY LEU ASP ASP LEU GLU TYR LEU GLN SEQRES 10 B 251 ALA ASP PHE ASN LEU LEU ARG ASP ILE ASP PRO GLY ALA SEQRES 11 B 251 PHE GLN ASP LEU ASN LYS LEU GLU VAL LEU ILE LEU ASN SEQRES 12 B 251 ASP ASN LEU ILE SER THR LEU PRO ALA ASN VAL PHE GLN SEQRES 13 B 251 TYR VAL PRO ILE THR HIS LEU ASP LEU ARG GLY ASN ARG SEQRES 14 B 251 LEU LYS THR LEU PRO TYR GLU GLU VAL LEU GLU GLN ILE SEQRES 15 B 251 PRO GLY ILE ALA GLU ILE LEU LEU GLU ASP ASN PRO TRP SEQRES 16 B 251 ASP CYS THR CYS ASP LEU LEU SER LEU LYS GLU TRP LEU SEQRES 17 B 251 GLU ASN ILE PRO LYS ASN ALA LEU ILE GLY ARG VAL VAL SEQRES 18 B 251 CYS GLU ALA PRO THR ARG LEU GLN GLY LYS ASP LEU ASN SEQRES 19 B 251 GLU THR THR GLU GLN ASP LEU CYS PRO LEU LYS SER ARG SEQRES 20 B 251 LEU VAL PRO ARG MODRES 4RCA ASN A 299 ASN GLYCOSYLATION SITE MODRES 4RCA ASN A 254 ASN GLYCOSYLATION SITE MODRES 4RCA ASN B 253 ASN GLYCOSYLATION SITE HET NAG A 401 14 HET NAG A 402 14 HET SO4 B 301 5 HET NAG B 302 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 5 SO4 O4 S 2- FORMUL 7 HOH *2(H2 O) HELIX 1 1 PRO A 278 MET A 282 5 5 HELIX 2 2 PHE B 78 TYR B 82 5 5 HELIX 3 3 PRO B 147 PHE B 150 5 4 HELIX 4 4 LEU B 220 ILE B 230 1 11 HELIX 5 5 ASP B 251 THR B 255 5 5 HELIX 6 6 THR B 256 CYS B 261 1 6 SHEET 1 A 4 ARG A 25 ARG A 28 0 SHEET 2 A 4 ALA A 41 THR A 48 -1 O THR A 48 N ARG A 25 SHEET 3 A 4 GLY A 79 ILE A 84 -1 O ILE A 84 N ALA A 41 SHEET 4 A 4 PHE A 69 GLU A 73 -1 N ILE A 72 O VAL A 81 SHEET 1 B 5 GLN A 33 VAL A 36 0 SHEET 2 B 5 GLU A 106 LEU A 116 1 O THR A 114 N GLY A 35 SHEET 3 B 5 ALA A 94 SER A 101 -1 N CYS A 98 O VAL A 109 SHEET 4 B 5 LYS A 54 LYS A 59 -1 N ASN A 58 O GLU A 97 SHEET 5 B 5 LYS A 62 LYS A 63 -1 O LYS A 62 N LYS A 59 SHEET 1 C 2 THR A 127 MET A 130 0 SHEET 2 C 2 ALA A 148 SER A 150 -1 O SER A 150 N THR A 127 SHEET 1 D 5 LYS A 135 GLU A 138 0 SHEET 2 D 5 ALA A 221 ARG A 226 1 O TYR A 224 N LYS A 135 SHEET 3 D 5 GLY A 203 THR A 210 -1 N TYR A 205 O ALA A 221 SHEET 4 D 5 GLU A 156 LYS A 161 -1 N GLU A 156 O THR A 210 SHEET 5 D 5 LEU A 164 PRO A 165 -1 O LEU A 164 N LYS A 161 SHEET 1 E 4 LYS A 135 GLU A 138 0 SHEET 2 E 4 ALA A 221 ARG A 226 1 O TYR A 224 N LYS A 135 SHEET 3 E 4 GLY A 203 THR A 210 -1 N TYR A 205 O ALA A 221 SHEET 4 E 4 THR A 215 TYR A 217 -1 O ARG A 216 N ALA A 209 SHEET 1 F 3 ALA A 143 MET A 145 0 SHEET 2 F 3 LEU A 192 ILE A 194 -1 O ILE A 194 N ALA A 143 SHEET 3 F 3 ILE A 175 GLN A 177 -1 N LYS A 176 O GLN A 193 SHEET 1 G 3 VAL A 234 ILE A 240 0 SHEET 2 G 3 GLY A 251 SER A 262 -1 O VAL A 260 N ARG A 237 SHEET 3 G 3 ARG A 286 VAL A 294 -1 O LEU A 291 N VAL A 253 SHEET 1 H 5 HIS A 245 ILE A 247 0 SHEET 2 H 5 GLY A 309 VAL A 319 1 O THR A 318 N HIS A 245 SHEET 3 H 5 ALA A 298 SER A 306 -1 N TYR A 300 O ALA A 315 SHEET 4 H 5 TYR A 266 LEU A 271 -1 N LYS A 268 O VAL A 303 SHEET 5 H 5 GLU A 274 ASP A 275 -1 O GLU A 274 N LEU A 271 SHEET 1 I 8 LEU B 38 ASP B 41 0 SHEET 2 I 8 TYR B 61 PHE B 64 1 O PHE B 64 N VAL B 40 SHEET 3 I 8 ALA B 84 HIS B 88 1 O VAL B 85 N TYR B 61 SHEET 4 I 8 ARG B 110 HIS B 112 1 O HIS B 112 N LEU B 87 SHEET 5 I 8 TYR B 134 GLN B 136 1 O TYR B 134 N LEU B 111 SHEET 6 I 8 VAL B 158 ILE B 160 1 O ILE B 160 N LEU B 135 SHEET 7 I 8 HIS B 181 ASP B 183 1 O HIS B 181 N LEU B 159 SHEET 8 I 8 GLU B 206 LEU B 208 1 O LEU B 208 N LEU B 182 SHEET 1 J 2 ARG B 72 LEU B 73 0 SHEET 2 J 2 GLU B 96 ILE B 97 1 O GLU B 96 N LEU B 73 SHEET 1 K 2 SER B 120 PHE B 121 0 SHEET 2 K 2 ASP B 144 ILE B 145 1 O ASP B 144 N PHE B 121 SHEET 1 L 2 TRP B 214 ASP B 215 0 SHEET 2 L 2 CYS B 241 ALA B 243 1 O GLU B 242 N TRP B 214 SSBOND 1 CYS A 45 CYS A 98 1555 1555 2.03 SSBOND 2 CYS A 147 CYS A 207 1555 1555 2.03 SSBOND 3 CYS A 257 CYS A 302 1555 1555 2.03 SSBOND 4 CYS B 24 CYS B 31 1555 1555 2.04 SSBOND 5 CYS B 29 CYS B 42 1555 1555 2.04 SSBOND 6 CYS B 216 CYS B 241 1555 1555 2.03 SSBOND 7 CYS B 218 CYS B 261 1555 1555 2.04 LINK ND2 ASN A 254 C1 NAG A 402 1555 1555 2.33 LINK ND2 ASN A 299 C1 NAG A 401 1555 1555 2.49 LINK ND2 ASN B 253 C1 NAG B 302 1555 1555 2.58 CISPEP 1 ASP A 50 PRO A 51 0 1.13 CISPEP 2 GLN A 85 PRO A 86 0 -3.85 CISPEP 3 THR A 89 PRO A 90 0 1.22 CISPEP 4 GLU A 93 ALA A 94 0 7.65 CISPEP 5 ASN A 152 PRO A 153 0 -3.68 CISPEP 6 SER A 262 PRO A 263 0 0.60 CISPEP 7 VAL B 23 CYS B 24 0 9.67 CISPEP 8 ILE B 34 GLU B 35 0 6.44 CISPEP 9 ALA B 243 PRO B 244 0 -3.55 CRYST1 76.981 60.195 83.679 90.00 102.19 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012990 0.000000 0.002806 0.00000 SCALE2 0.000000 0.016613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012226 0.00000