HEADER OXIDOREDUCTASE 17-SEP-14 4RCV TITLE M. TUBERCULOSIS 1-DEOXY-D-XYLULOSE-5-PHOSPHATE REDUCTOISOMERASE BOUND TITLE 2 TO 1-DEOXY-L-ERYTHRULOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-389; COMPND 5 SYNONYM: DXP REDUCTOISOMERASE, 1-DEOXYXYLULOSE-5-PHOSPHATE COMPND 6 REDUCTOISOMERASE, 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE SYNTHASE; COMPND 7 EC: 1.1.1.267; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: DXR, P425_02990, RVBD_2870C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REDUCTOISOMERASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.GULICK,C.L.ALLEN,S.A.KHOLODAR,A.S.MURKIN REVDAT 2 20-SEP-23 4RCV 1 REMARK SEQADV LINK REVDAT 1 18-MAR-15 4RCV 0 JRNL AUTH S.A.KHOLODAR,C.L.ALLEN,A.M.GULICK,A.S.MURKIN JRNL TITL THE ROLE OF PHOSPHATE IN A MULTISTEP ENZYMATIC REACTION: JRNL TITL 2 REACTIONS OF THE SUBSTRATE AND INTERMEDIATE IN PIECES. JRNL REF J.AM.CHEM.SOC. V. 137 2748 2015 JRNL REFN ISSN 0002-7863 JRNL PMID 25642788 JRNL DOI 10.1021/JA512911F REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 32295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1655 - 5.2458 0.99 2629 148 0.1810 0.2132 REMARK 3 2 5.2458 - 4.1659 1.00 2563 146 0.1580 0.2003 REMARK 3 3 4.1659 - 3.6399 1.00 2568 142 0.1497 0.1877 REMARK 3 4 3.6399 - 3.3074 1.00 2561 127 0.1619 0.2181 REMARK 3 5 3.3074 - 3.0705 1.00 2549 132 0.1720 0.2533 REMARK 3 6 3.0705 - 2.8895 1.00 2581 123 0.1831 0.2554 REMARK 3 7 2.8895 - 2.7449 1.00 2547 150 0.1823 0.2971 REMARK 3 8 2.7449 - 2.6254 1.00 2554 142 0.1913 0.2837 REMARK 3 9 2.6254 - 2.5244 1.00 2524 138 0.1845 0.2603 REMARK 3 10 2.5244 - 2.4373 1.00 2560 114 0.1917 0.2624 REMARK 3 11 2.4373 - 2.3611 1.00 2562 159 0.1846 0.2732 REMARK 3 12 2.3611 - 2.2940 0.97 2461 115 0.2050 0.2887 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5641 REMARK 3 ANGLE : 1.151 7729 REMARK 3 CHIRALITY : 0.071 916 REMARK 3 PLANARITY : 0.006 1009 REMARK 3 DIHEDRAL : 15.207 1971 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087187. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1271 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32321 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.294 REMARK 200 RESOLUTION RANGE LOW (A) : 83.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4A03 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3500, 25 MM SODIUM ACETATE, 25 REMARK 280 MM BIS-TRIS, 1% TACSIMATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.18900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 ARG A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 GLY A 7 REMARK 465 ARG A 8 REMARK 465 ALA A 9 REMARK 465 ASP A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 199 REMARK 465 HIS A 200 REMARK 465 PRO A 201 REMARK 465 THR A 202 REMARK 465 TRP A 203 REMARK 465 SER A 204 REMARK 465 MET A 205 REMARK 465 GLY A 206 REMARK 465 MET B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 ARG B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 ASP B 6 REMARK 465 GLY B 7 REMARK 465 ARG B 8 REMARK 465 ALA B 9 REMARK 465 ASP B 10 REMARK 465 HIS B 200 REMARK 465 PRO B 201 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 37 CG OD1 OD2 REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 LYS A 171 CE NZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 GLN A 383 CD OE1 NE2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 LYS B 171 CE NZ REMARK 470 GLU B 195 CG CD OE1 OE2 REMARK 470 MET B 205 CG SD CE REMARK 470 PRO B 207 CG CD REMARK 470 ARG B 279 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 338 CG CD1 CD2 REMARK 470 HIS B 356 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 142 O HOH A 564 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 207 C - N - CA ANGL. DEV. = 12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 197 61.72 -106.49 REMARK 500 SER A 249 164.65 164.36 REMARK 500 ASP A 266 109.03 -162.86 REMARK 500 TRP B 203 0.00 -69.11 REMARK 500 SER B 204 -124.19 -152.46 REMARK 500 MET B 205 83.08 -69.45 REMARK 500 PRO B 207 -96.99 -20.88 REMARK 500 SER B 249 173.01 172.16 REMARK 500 ASP B 266 115.11 -176.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NDP B 402 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 151 OD1 REMARK 620 2 GLU A 153 OE2 95.4 REMARK 620 3 GLU A 222 OE2 106.1 93.6 REMARK 620 4 DE2 A 403 O5 86.0 96.9 163.2 REMARK 620 5 DE2 A 403 O3 155.7 99.0 92.4 73.0 REMARK 620 6 DE2 A 403 O2 94.1 170.5 83.9 83.6 72.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 151 OD1 REMARK 620 2 GLU B 153 OE2 99.9 REMARK 620 3 GLU B 222 OE2 115.6 99.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DE2 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO3 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO3 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OOE RELATED DB: PDB REMARK 900 RELATED ID: 4OOF RELATED DB: PDB DBREF 4RCV A 1 389 UNP I6YAH0 I6YAH0_MYCTU 1 389 DBREF 4RCV B 1 389 UNP I6YAH0 I6YAH0_MYCTU 1 389 SEQADV 4RCV MET A -14 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS A -13 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS A -12 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS A -11 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS A -10 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS A -9 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS A -8 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV LEU A -7 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV VAL A -6 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV ARG A -5 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV PRO A -4 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV ARG A -3 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV GLY A -2 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV SER A -1 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS A 0 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV MET B -14 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS B -13 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS B -12 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS B -11 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS B -10 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS B -9 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS B -8 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV LEU B -7 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV VAL B -6 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV ARG B -5 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV PRO B -4 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV ARG B -3 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV GLY B -2 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV SER B -1 UNP I6YAH0 EXPRESSION TAG SEQADV 4RCV HIS B 0 UNP I6YAH0 EXPRESSION TAG SEQRES 1 A 404 MET HIS HIS HIS HIS HIS HIS LEU VAL ARG PRO ARG GLY SEQRES 2 A 404 SER HIS MET THR ASN SER THR ASP GLY ARG ALA ASP GLY SEQRES 3 A 404 ARG LEU ARG VAL VAL VAL LEU GLY SER THR GLY SER ILE SEQRES 4 A 404 GLY THR GLN ALA LEU GLN VAL ILE ALA ASP ASN PRO ASP SEQRES 5 A 404 ARG PHE GLU VAL VAL GLY LEU ALA ALA GLY GLY ALA HIS SEQRES 6 A 404 LEU ASP THR LEU LEU ARG GLN ARG ALA GLN THR GLY VAL SEQRES 7 A 404 THR ASN ILE ALA VAL ALA ASP GLU HIS ALA ALA GLN ARG SEQRES 8 A 404 VAL GLY ASP ILE PRO TYR HIS GLY SER ASP ALA ALA THR SEQRES 9 A 404 ARG LEU VAL GLU GLN THR GLU ALA ASP VAL VAL LEU ASN SEQRES 10 A 404 ALA LEU VAL GLY ALA LEU GLY LEU ARG PRO THR LEU ALA SEQRES 11 A 404 ALA LEU LYS THR GLY ALA ARG LEU ALA LEU ALA ASN LYS SEQRES 12 A 404 GLU SER LEU VAL ALA GLY GLY SER LEU VAL LEU ARG ALA SEQRES 13 A 404 ALA ARG PRO GLY GLN ILE VAL PRO VAL ASP SER GLU HIS SEQRES 14 A 404 SER ALA LEU ALA GLN CYS LEU ARG GLY GLY THR PRO ASP SEQRES 15 A 404 GLU VAL ALA LYS LEU VAL LEU THR ALA SER GLY GLY PRO SEQRES 16 A 404 PHE ARG GLY TRP SER ALA ALA ASP LEU GLU HIS VAL THR SEQRES 17 A 404 PRO GLU GLN ALA GLY ALA HIS PRO THR TRP SER MET GLY SEQRES 18 A 404 PRO MET ASN THR LEU ASN SER ALA SER LEU VAL ASN LYS SEQRES 19 A 404 GLY LEU GLU VAL ILE GLU THR HIS LEU LEU PHE GLY ILE SEQRES 20 A 404 PRO TYR ASP ARG ILE ASP VAL VAL VAL HIS PRO GLN SER SEQRES 21 A 404 ILE ILE HIS SER MET VAL THR PHE ILE ASP GLY SER THR SEQRES 22 A 404 ILE ALA GLN ALA SER PRO PRO ASP MET LYS LEU PRO ILE SEQRES 23 A 404 SER LEU ALA LEU GLY TRP PRO ARG ARG VAL SER GLY ALA SEQRES 24 A 404 ALA ALA ALA CYS ASP PHE HIS THR ALA SER SER TRP GLU SEQRES 25 A 404 PHE GLU PRO LEU ASP THR ASP VAL PHE PRO ALA VAL GLU SEQRES 26 A 404 LEU ALA ARG GLN ALA GLY VAL ALA GLY GLY CYS MET THR SEQRES 27 A 404 ALA VAL TYR ASN ALA ALA ASN GLU GLU ALA ALA ALA ALA SEQRES 28 A 404 PHE LEU ALA GLY ARG ILE GLY PHE PRO ALA ILE VAL GLY SEQRES 29 A 404 ILE ILE ALA ASP VAL LEU HIS ALA ALA ASP GLN TRP ALA SEQRES 30 A 404 VAL GLU PRO ALA THR VAL ASP ASP VAL LEU ASP ALA GLN SEQRES 31 A 404 ARG TRP ALA ARG GLU ARG ALA GLN ARG ALA VAL SER GLY SEQRES 32 A 404 MET SEQRES 1 B 404 MET HIS HIS HIS HIS HIS HIS LEU VAL ARG PRO ARG GLY SEQRES 2 B 404 SER HIS MET THR ASN SER THR ASP GLY ARG ALA ASP GLY SEQRES 3 B 404 ARG LEU ARG VAL VAL VAL LEU GLY SER THR GLY SER ILE SEQRES 4 B 404 GLY THR GLN ALA LEU GLN VAL ILE ALA ASP ASN PRO ASP SEQRES 5 B 404 ARG PHE GLU VAL VAL GLY LEU ALA ALA GLY GLY ALA HIS SEQRES 6 B 404 LEU ASP THR LEU LEU ARG GLN ARG ALA GLN THR GLY VAL SEQRES 7 B 404 THR ASN ILE ALA VAL ALA ASP GLU HIS ALA ALA GLN ARG SEQRES 8 B 404 VAL GLY ASP ILE PRO TYR HIS GLY SER ASP ALA ALA THR SEQRES 9 B 404 ARG LEU VAL GLU GLN THR GLU ALA ASP VAL VAL LEU ASN SEQRES 10 B 404 ALA LEU VAL GLY ALA LEU GLY LEU ARG PRO THR LEU ALA SEQRES 11 B 404 ALA LEU LYS THR GLY ALA ARG LEU ALA LEU ALA ASN LYS SEQRES 12 B 404 GLU SER LEU VAL ALA GLY GLY SER LEU VAL LEU ARG ALA SEQRES 13 B 404 ALA ARG PRO GLY GLN ILE VAL PRO VAL ASP SER GLU HIS SEQRES 14 B 404 SER ALA LEU ALA GLN CYS LEU ARG GLY GLY THR PRO ASP SEQRES 15 B 404 GLU VAL ALA LYS LEU VAL LEU THR ALA SER GLY GLY PRO SEQRES 16 B 404 PHE ARG GLY TRP SER ALA ALA ASP LEU GLU HIS VAL THR SEQRES 17 B 404 PRO GLU GLN ALA GLY ALA HIS PRO THR TRP SER MET GLY SEQRES 18 B 404 PRO MET ASN THR LEU ASN SER ALA SER LEU VAL ASN LYS SEQRES 19 B 404 GLY LEU GLU VAL ILE GLU THR HIS LEU LEU PHE GLY ILE SEQRES 20 B 404 PRO TYR ASP ARG ILE ASP VAL VAL VAL HIS PRO GLN SER SEQRES 21 B 404 ILE ILE HIS SER MET VAL THR PHE ILE ASP GLY SER THR SEQRES 22 B 404 ILE ALA GLN ALA SER PRO PRO ASP MET LYS LEU PRO ILE SEQRES 23 B 404 SER LEU ALA LEU GLY TRP PRO ARG ARG VAL SER GLY ALA SEQRES 24 B 404 ALA ALA ALA CYS ASP PHE HIS THR ALA SER SER TRP GLU SEQRES 25 B 404 PHE GLU PRO LEU ASP THR ASP VAL PHE PRO ALA VAL GLU SEQRES 26 B 404 LEU ALA ARG GLN ALA GLY VAL ALA GLY GLY CYS MET THR SEQRES 27 B 404 ALA VAL TYR ASN ALA ALA ASN GLU GLU ALA ALA ALA ALA SEQRES 28 B 404 PHE LEU ALA GLY ARG ILE GLY PHE PRO ALA ILE VAL GLY SEQRES 29 B 404 ILE ILE ALA ASP VAL LEU HIS ALA ALA ASP GLN TRP ALA SEQRES 30 B 404 VAL GLU PRO ALA THR VAL ASP ASP VAL LEU ASP ALA GLN SEQRES 31 B 404 ARG TRP ALA ARG GLU ARG ALA GLN ARG ALA VAL SER GLY SEQRES 32 B 404 MET HET MN A 401 1 HET NDP A 402 48 HET DE2 A 403 7 HET PO3 A 404 4 HET MN B 401 1 HET NDP B 402 22 HET PO3 B 403 4 HETNAM MN MANGANESE (II) ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM DE2 1-DEOXY-L-ERYTHRULOSE HETNAM PO3 PHOSPHITE ION FORMUL 3 MN 2(MN 2+) FORMUL 4 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 DE2 C4 H8 O3 FORMUL 6 PO3 2(O3 P 3-) FORMUL 10 HOH *133(H2 O) HELIX 1 1 GLY A 22 ASN A 35 1 14 HELIX 2 2 HIS A 50 GLY A 62 1 13 HELIX 3 3 ASP A 70 GLY A 78 1 9 HELIX 4 4 ASP A 86 THR A 95 1 10 HELIX 5 5 GLY A 106 LEU A 108 5 3 HELIX 6 6 GLY A 109 THR A 119 1 11 HELIX 7 7 ASN A 127 GLY A 135 1 9 HELIX 8 8 GLY A 135 ALA A 142 1 8 HELIX 9 9 ASP A 151 LEU A 161 1 11 HELIX 10 10 ARG A 162 GLY A 164 5 3 HELIX 11 11 THR A 165 ASP A 167 5 3 HELIX 12 12 SER A 185 GLU A 190 1 6 HELIX 13 13 MET A 208 LEU A 216 1 9 HELIX 14 14 LEU A 216 GLY A 231 1 16 HELIX 15 15 PRO A 233 ASP A 235 5 3 HELIX 16 16 MET A 267 TRP A 277 1 11 HELIX 17 17 PRO A 307 GLY A 319 1 13 HELIX 18 18 CYS A 321 ALA A 339 1 19 HELIX 19 19 PRO A 345 ALA A 357 1 13 HELIX 20 20 ALA A 358 VAL A 363 5 6 HELIX 21 21 THR A 367 GLY A 388 1 22 HELIX 22 22 GLY B 22 ASP B 34 1 13 HELIX 23 23 HIS B 50 GLY B 62 1 13 HELIX 24 24 ASP B 70 GLN B 75 1 6 HELIX 25 25 ASP B 86 THR B 95 1 10 HELIX 26 26 GLY B 106 LEU B 108 5 3 HELIX 27 27 GLY B 109 GLY B 120 1 12 HELIX 28 28 LYS B 128 ALA B 133 1 6 HELIX 29 29 GLY B 134 ALA B 142 1 9 HELIX 30 30 ASP B 151 LEU B 161 1 11 HELIX 31 31 ARG B 162 GLY B 164 5 3 HELIX 32 32 THR B 165 ASP B 167 5 3 HELIX 33 33 SER B 185 GLU B 190 1 6 HELIX 34 34 GLY B 206 SER B 215 1 10 HELIX 35 35 LEU B 216 GLY B 231 1 16 HELIX 36 36 PRO B 233 ASP B 235 5 3 HELIX 37 37 MET B 267 TRP B 277 1 11 HELIX 38 38 PRO B 307 GLY B 319 1 13 HELIX 39 39 CYS B 321 ALA B 339 1 19 HELIX 40 40 PRO B 345 ALA B 357 1 13 HELIX 41 41 ALA B 358 VAL B 363 5 6 HELIX 42 42 THR B 367 GLY B 388 1 22 SHEET 1 A 7 TYR A 82 HIS A 83 0 SHEET 2 A 7 ILE A 66 VAL A 68 1 N VAL A 68 O TYR A 82 SHEET 3 A 7 PHE A 39 ALA A 46 1 N LEU A 44 O ALA A 67 SHEET 4 A 7 LEU A 13 LEU A 18 1 N VAL A 15 O GLU A 40 SHEET 5 A 7 VAL A 99 ASN A 102 1 O LEU A 101 N VAL A 16 SHEET 6 A 7 ARG A 122 LEU A 125 1 O ARG A 122 N VAL A 100 SHEET 7 A 7 ILE A 147 PRO A 149 1 O VAL A 148 N LEU A 125 SHEET 1 B10 ILE A 237 VAL A 241 0 SHEET 2 B10 VAL A 169 ALA A 176 1 N LEU A 172 O ASP A 238 SHEET 3 B10 ILE A 247 PHE A 253 -1 O MET A 250 N VAL A 173 SHEET 4 B10 THR A 258 ALA A 262 -1 O ILE A 259 N VAL A 251 SHEET 5 B10 THR B 258 ALA B 262 -1 O ALA B 260 N ALA A 260 SHEET 6 B10 ILE B 247 PHE B 253 -1 N VAL B 251 O ILE B 259 SHEET 7 B10 VAL B 169 ALA B 176 -1 N ALA B 170 O THR B 252 SHEET 8 B10 ILE B 237 VAL B 241 1 O ASP B 238 N LEU B 172 SHEET 9 B10 SER B 294 PRO B 300 -1 O GLU B 299 N VAL B 241 SHEET 10 B10 SER A 294 PHE A 298 -1 N SER A 294 O PHE B 298 SHEET 1 C 7 TYR B 82 HIS B 83 0 SHEET 2 C 7 ILE B 66 VAL B 68 1 N VAL B 68 O TYR B 82 SHEET 3 C 7 PHE B 39 ALA B 46 1 N LEU B 44 O ALA B 67 SHEET 4 C 7 LEU B 13 LEU B 18 1 N VAL B 15 O GLU B 40 SHEET 5 C 7 VAL B 99 ASN B 102 1 O LEU B 101 N VAL B 16 SHEET 6 C 7 ARG B 122 LEU B 125 1 O ARG B 122 N VAL B 100 SHEET 7 C 7 ILE B 147 PRO B 149 1 O VAL B 148 N LEU B 123 LINK OD1 ASP A 151 MN MN A 401 1555 1555 2.12 LINK OE2 GLU A 153 MN MN A 401 1555 1555 2.19 LINK OE2 GLU A 222 MN MN A 401 1555 1555 2.17 LINK MN MN A 401 O5 DE2 A 403 1555 1555 2.36 LINK MN MN A 401 O3 DE2 A 403 1555 1555 2.47 LINK MN MN A 401 O2 DE2 A 403 1555 1555 2.51 LINK OD1 ASP B 151 MN MN B 401 1555 1555 2.22 LINK OE2 GLU B 153 MN MN B 401 1555 1555 2.22 LINK OE2 GLU B 222 MN MN B 401 1555 1555 2.20 CISPEP 1 TRP A 277 PRO A 278 0 5.23 CISPEP 2 TRP B 277 PRO B 278 0 1.92 SITE 1 AC1 4 ASP A 151 GLU A 153 GLU A 222 DE2 A 403 SITE 1 AC2 26 GLY A 19 THR A 21 GLY A 22 SER A 23 SITE 2 AC2 26 ILE A 24 ALA A 46 GLY A 47 GLY A 48 SITE 3 AC2 26 ALA A 49 HIS A 50 ALA A 69 ALA A 103 SITE 4 AC2 26 LEU A 104 LEU A 108 ALA A 126 ASN A 127 SITE 5 AC2 26 LYS A 128 GLU A 129 ASP A 151 ASN A 209 SITE 6 AC2 26 MET A 267 DE2 A 403 HOH A 501 HOH A 502 SITE 7 AC2 26 HOH A 521 HOH A 573 SITE 1 AC3 10 LYS A 128 ASP A 151 SER A 152 GLU A 153 SITE 2 AC3 10 ASN A 209 SER A 213 ASN A 218 GLU A 222 SITE 3 AC3 10 MN A 401 NDP A 402 SITE 1 AC4 8 ALA A 176 SER A 177 SER A 213 ASN A 218 SITE 2 AC4 8 LYS A 219 HOH A 538 HOH A 544 HOH A 562 SITE 1 AC5 3 ASP B 151 GLU B 153 GLU B 222 SITE 1 AC6 13 GLY B 19 THR B 21 GLY B 22 SER B 23 SITE 2 AC6 13 ILE B 24 GLY B 47 GLY B 48 ALA B 49 SITE 3 AC6 13 HIS B 50 ALA B 103 LEU B 104 VAL B 105 SITE 4 AC6 13 HOH B 507 SITE 1 AC7 5 ALA B 176 SER B 177 SER B 213 ASN B 218 SITE 2 AC7 5 LYS B 219 CRYST1 67.370 64.378 85.741 90.00 101.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014843 0.000000 0.003082 0.00000 SCALE2 0.000000 0.015533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011912 0.00000