HEADER SIGNALING PROTEIN 17-SEP-14 4RCW TITLE CRYSTAL STRUCTURE OF HUMAN SLITRK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SLIT AND NTRK-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLITRK1, KIAA1910, LRRC12, UNQ233/PRO266; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS LEUCINE RICH-REPEAT, SYNAPTIC ADHESION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.M.KIM,B.S.PARK,D.KIM,S.G.LEE REVDAT 4 06-NOV-24 4RCW 1 REMARK REVDAT 3 20-SEP-23 4RCW 1 REMARK REVDAT 2 26-NOV-14 4RCW 1 JRNL REVDAT 1 19-NOV-14 4RCW 0 JRNL AUTH J.W.UM,K.H.KIM,B.S.PARK,Y.CHOI,D.KIM,C.Y.KIM,S.J.KIM,M.KIM, JRNL AUTH 2 J.S.KO,S.G.LEE,G.CHOII,J.NAM,W.D.HEO,E.KIM,J.O.LEE,J.KO, JRNL AUTH 3 H.M.KIM JRNL TITL STRUCTURAL BASIS FOR LAR-RPTP/SLITRK COMPLEX-MEDIATED JRNL TITL 2 SYNAPTIC ADHESION. JRNL REF NAT COMMUN V. 5 5423 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 25394468 JRNL DOI 10.1038/NCOMMS6423 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 10568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5727 - 5.0664 1.00 2749 132 0.2631 0.2751 REMARK 3 2 5.0664 - 4.0219 1.00 2526 128 0.2291 0.3102 REMARK 3 3 4.0219 - 3.5137 0.99 2458 128 0.2651 0.3049 REMARK 3 4 3.5137 - 3.1925 0.95 2326 121 0.3093 0.3412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 107.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3797 REMARK 3 ANGLE : 0.600 5136 REMARK 3 CHIRALITY : 0.023 587 REMARK 3 PLANARITY : 0.003 660 REMARK 3 DIHEDRAL : 11.077 1403 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 342 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8786 19.2537 -4.3838 REMARK 3 T TENSOR REMARK 3 T11: 1.1141 T22: 0.7441 REMARK 3 T33: 0.5600 T12: 0.2848 REMARK 3 T13: -0.1427 T23: -0.0978 REMARK 3 L TENSOR REMARK 3 L11: -0.0021 L22: -0.0006 REMARK 3 L33: -0.0050 L12: 0.0063 REMARK 3 L13: 0.0066 L23: -0.0040 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: -0.0675 S13: -0.1202 REMARK 3 S21: 0.0871 S22: 0.0525 S23: 0.1226 REMARK 3 S31: 0.0328 S32: -0.0939 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 359 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3094 9.4070 2.8950 REMARK 3 T TENSOR REMARK 3 T11: 1.1309 T22: 0.4949 REMARK 3 T33: -0.1248 T12: 0.3463 REMARK 3 T13: -0.2759 T23: -1.0824 REMARK 3 L TENSOR REMARK 3 L11: -0.0009 L22: 0.0057 REMARK 3 L33: 0.0126 L12: 0.0160 REMARK 3 L13: 0.0148 L23: 0.0133 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.0221 S13: 0.1165 REMARK 3 S21: -0.0419 S22: 0.0156 S23: -0.0520 REMARK 3 S31: -0.0020 S32: -0.0449 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4353 12.7106 5.2547 REMARK 3 T TENSOR REMARK 3 T11: 1.1905 T22: 0.3940 REMARK 3 T33: 0.4646 T12: 0.2868 REMARK 3 T13: -0.2007 T23: -0.4947 REMARK 3 L TENSOR REMARK 3 L11: 0.0078 L22: 0.0123 REMARK 3 L33: 0.0219 L12: -0.0270 REMARK 3 L13: -0.0191 L23: 0.0067 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: 0.0815 S13: -0.3555 REMARK 3 S21: -0.1386 S22: 0.2965 S23: 0.2426 REMARK 3 S31: -0.0239 S32: 0.0107 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 403 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9302 12.2895 11.0117 REMARK 3 T TENSOR REMARK 3 T11: 0.9495 T22: 0.1276 REMARK 3 T33: 0.6508 T12: 0.0718 REMARK 3 T13: -0.1542 T23: -0.3096 REMARK 3 L TENSOR REMARK 3 L11: -0.0014 L22: 0.0154 REMARK 3 L33: 0.0079 L12: 0.0020 REMARK 3 L13: -0.0149 L23: 0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.2062 S12: 0.1457 S13: -0.1557 REMARK 3 S21: -0.1824 S22: -0.1524 S23: 0.2109 REMARK 3 S31: 0.1003 S32: 0.0689 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 423 THROUGH 525 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2442 22.4539 21.4059 REMARK 3 T TENSOR REMARK 3 T11: 0.5869 T22: 0.0544 REMARK 3 T33: 0.5028 T12: 0.1700 REMARK 3 T13: -0.0004 T23: -0.2600 REMARK 3 L TENSOR REMARK 3 L11: 0.0515 L22: 0.0650 REMARK 3 L33: 0.0149 L12: -0.0735 REMARK 3 L13: -0.0247 L23: -0.0236 REMARK 3 S TENSOR REMARK 3 S11: 0.3978 S12: -0.8842 S13: -0.5647 REMARK 3 S21: -0.3947 S22: -0.3792 S23: -0.1785 REMARK 3 S31: -0.0155 S32: 0.0954 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 526 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7282 27.5119 39.8850 REMARK 3 T TENSOR REMARK 3 T11: 0.7106 T22: 0.3503 REMARK 3 T33: 0.1677 T12: 0.2219 REMARK 3 T13: -0.0279 T23: -0.5642 REMARK 3 L TENSOR REMARK 3 L11: -0.0025 L22: 0.0053 REMARK 3 L33: 0.0018 L12: -0.0110 REMARK 3 L13: 0.0036 L23: 0.0132 REMARK 3 S TENSOR REMARK 3 S11: -0.0895 S12: -0.0640 S13: -0.1273 REMARK 3 S21: 0.0189 S22: -0.0692 S23: -0.0678 REMARK 3 S31: -0.0031 S32: -0.0126 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 538 THROUGH 579 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9327 34.8662 40.5136 REMARK 3 T TENSOR REMARK 3 T11: 0.8482 T22: 0.4014 REMARK 3 T33: 0.6654 T12: 0.0281 REMARK 3 T13: -0.0266 T23: -0.1973 REMARK 3 L TENSOR REMARK 3 L11: 0.0196 L22: 0.0269 REMARK 3 L33: 0.0151 L12: 0.0248 REMARK 3 L13: 0.0173 L23: 0.0067 REMARK 3 S TENSOR REMARK 3 S11: -0.3143 S12: -0.1185 S13: 0.1956 REMARK 3 S21: 0.0534 S22: 0.1051 S23: 0.0419 REMARK 3 S31: -0.3362 S32: -0.0562 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 343 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1864 36.5703 -0.7266 REMARK 3 T TENSOR REMARK 3 T11: 1.2844 T22: 0.8845 REMARK 3 T33: 0.9238 T12: 0.0301 REMARK 3 T13: 0.3246 T23: -0.3212 REMARK 3 L TENSOR REMARK 3 L11: 0.0001 L22: -0.0011 REMARK 3 L33: -0.0045 L12: 0.0020 REMARK 3 L13: -0.0091 L23: 0.0056 REMARK 3 S TENSOR REMARK 3 S11: 0.1015 S12: 0.0105 S13: 0.0539 REMARK 3 S21: -0.0392 S22: 0.0410 S23: -0.0296 REMARK 3 S31: 0.0506 S32: 0.0225 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 359 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4715 45.0787 6.0076 REMARK 3 T TENSOR REMARK 3 T11: 1.3666 T22: 0.3988 REMARK 3 T33: 0.8663 T12: -0.0146 REMARK 3 T13: 0.1086 T23: 0.0588 REMARK 3 L TENSOR REMARK 3 L11: 0.0045 L22: 0.0031 REMARK 3 L33: 0.0089 L12: 0.0070 REMARK 3 L13: 0.0043 L23: -0.0233 REMARK 3 S TENSOR REMARK 3 S11: -0.1451 S12: -0.0496 S13: 0.0181 REMARK 3 S21: -0.1107 S22: -0.1779 S23: -0.0446 REMARK 3 S31: -0.0354 S32: 0.0344 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 379 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2980 43.6922 7.3625 REMARK 3 T TENSOR REMARK 3 T11: 2.0368 T22: -0.0213 REMARK 3 T33: 0.3998 T12: 0.1715 REMARK 3 T13: 0.1601 T23: 0.4694 REMARK 3 L TENSOR REMARK 3 L11: -0.0061 L22: 0.0079 REMARK 3 L33: 0.0117 L12: 0.0093 REMARK 3 L13: -0.0359 L23: -0.0436 REMARK 3 S TENSOR REMARK 3 S11: -0.3175 S12: 0.1788 S13: 0.0143 REMARK 3 S21: -0.0429 S22: -0.1792 S23: -0.2877 REMARK 3 S31: -0.0509 S32: 0.1924 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 423 THROUGH 440 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5558 38.2188 11.9542 REMARK 3 T TENSOR REMARK 3 T11: 1.6839 T22: 0.5438 REMARK 3 T33: 0.2535 T12: 0.6759 REMARK 3 T13: -0.0200 T23: 0.2740 REMARK 3 L TENSOR REMARK 3 L11: -0.0134 L22: 0.0016 REMARK 3 L33: 0.0260 L12: -0.0184 REMARK 3 L13: 0.0126 L23: -0.0267 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: -0.1615 S13: 0.0440 REMARK 3 S21: 0.1482 S22: -0.0929 S23: -0.0547 REMARK 3 S31: -0.0634 S32: 0.0006 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 441 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5072 35.5772 7.2988 REMARK 3 T TENSOR REMARK 3 T11: 1.2061 T22: 0.7504 REMARK 3 T33: 0.4426 T12: 0.4926 REMARK 3 T13: -0.1158 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: -0.0079 L22: 0.0087 REMARK 3 L33: 0.0134 L12: -0.0023 REMARK 3 L13: 0.0039 L23: 0.0017 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: 0.0936 S13: 0.0132 REMARK 3 S21: 0.0142 S22: 0.0993 S23: -0.0838 REMARK 3 S31: 0.0373 S32: -0.0905 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 454 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4934 33.2618 18.3729 REMARK 3 T TENSOR REMARK 3 T11: 0.9528 T22: 0.3044 REMARK 3 T33: 0.4970 T12: 0.4539 REMARK 3 T13: -0.2194 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: -0.0013 L22: 0.0427 REMARK 3 L33: 0.0312 L12: -0.0668 REMARK 3 L13: 0.0153 L23: -0.0327 REMARK 3 S TENSOR REMARK 3 S11: 0.1335 S12: 0.0908 S13: 0.0159 REMARK 3 S21: 0.0087 S22: -0.1913 S23: 0.1377 REMARK 3 S31: -0.0166 S32: 0.0723 S33: -0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 506 THROUGH 525 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2994 25.6719 21.9673 REMARK 3 T TENSOR REMARK 3 T11: 0.4706 T22: -0.3592 REMARK 3 T33: 0.9333 T12: 0.9324 REMARK 3 T13: -0.3604 T23: -0.2312 REMARK 3 L TENSOR REMARK 3 L11: -0.0069 L22: 0.0115 REMARK 3 L33: -0.0043 L12: -0.0122 REMARK 3 L13: 0.0080 L23: 0.0107 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: 0.0833 S13: 0.0976 REMARK 3 S21: 0.0576 S22: 0.1806 S23: 0.0656 REMARK 3 S31: -0.0678 S32: -0.0675 S33: -0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 526 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4327 27.0694 34.0965 REMARK 3 T TENSOR REMARK 3 T11: 0.7165 T22: 0.6262 REMARK 3 T33: 0.5008 T12: 0.1070 REMARK 3 T13: -0.0408 T23: -0.0669 REMARK 3 L TENSOR REMARK 3 L11: 0.0018 L22: -0.0139 REMARK 3 L33: 0.0020 L12: 0.0014 REMARK 3 L13: 0.0031 L23: -0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: 0.1028 S13: -0.0397 REMARK 3 S21: 0.0220 S22: 0.0065 S23: 0.0237 REMARK 3 S31: -0.0202 S32: 0.0939 S33: -0.0000 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 538 THROUGH 579 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9223 19.7293 34.4104 REMARK 3 T TENSOR REMARK 3 T11: 0.6456 T22: 0.5162 REMARK 3 T33: 0.8705 T12: 0.2374 REMARK 3 T13: -0.0672 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: -0.0139 L22: 0.0363 REMARK 3 L33: 0.0074 L12: -0.0265 REMARK 3 L13: 0.0044 L23: -0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.1582 S12: 0.0543 S13: 0.0560 REMARK 3 S21: -0.0289 S22: 0.1652 S23: 0.1685 REMARK 3 S31: 0.0925 S32: 0.0649 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99362 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10569 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.193 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3M18 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA-CITRATE, PH 5.5, 16% REMARK 280 ISOPROPANOL, AND 12% PEG4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.64867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 273.29733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 204.97300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 341.62167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.32433 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 136.64867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 273.29733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 341.62167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 204.97300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.32433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 341 REMARK 465 SER A 353 REMARK 465 PRO A 372 REMARK 465 LYS A 373 REMARK 465 LEU A 374 REMARK 465 GLN A 580 REMARK 465 CYS B 341 REMARK 465 PRO B 342 REMARK 465 LEU B 370 REMARK 465 LYS B 371 REMARK 465 PRO B 372 REMARK 465 LYS B 373 REMARK 465 LEU B 374 REMARK 465 GLN B 580 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS B 345 SG CYS B 359 2.13 REMARK 500 SG CYS B 535 CB CYS B 578 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 359 65.83 -118.55 REMARK 500 ASN A 361 15.81 57.93 REMARK 500 ASN A 363 94.67 -63.90 REMARK 500 ASN A 385 -166.50 -106.04 REMARK 500 TYR A 434 75.62 -115.87 REMARK 500 ASN A 481 -163.67 -123.88 REMARK 500 ASN A 504 -151.00 -111.71 REMARK 500 ASN B 361 13.93 57.27 REMARK 500 ASN B 363 96.58 -55.42 REMARK 500 LEU B 422 79.75 -106.45 REMARK 500 TYR B 434 76.84 -115.41 REMARK 500 ALA B 458 64.89 -107.17 REMARK 500 ASN B 481 -166.98 -115.80 REMARK 500 ASN B 504 -154.58 -111.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RCA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PTPDELTA AND HUMAN SLITRK1 COMPLEX DBREF 4RCW A 341 580 UNP Q96PX8 SLIK1_HUMAN 341 580 DBREF 4RCW B 341 580 UNP Q96PX8 SLIK1_HUMAN 341 580 SEQRES 1 A 240 CYS PRO GLY GLY CYS SER CYS ASP HIS ILE PRO GLY SER SEQRES 2 A 240 GLY LEU LYS MET ASN CYS ASN ASN ARG ASN VAL SER SER SEQRES 3 A 240 LEU ALA ASP LEU LYS PRO LYS LEU SER ASN VAL GLN GLU SEQRES 4 A 240 LEU PHE LEU ARG ASP ASN LYS ILE HIS SER ILE ARG LYS SEQRES 5 A 240 SER HIS PHE VAL ASP TYR LYS ASN LEU ILE LEU LEU ASP SEQRES 6 A 240 LEU GLY ASN ASN ASN ILE ALA THR VAL GLU ASN ASN THR SEQRES 7 A 240 PHE LYS ASN LEU LEU ASP LEU ARG TRP LEU TYR MET ASP SEQRES 8 A 240 SER ASN TYR LEU ASP THR LEU SER ARG GLU LYS PHE ALA SEQRES 9 A 240 GLY LEU GLN ASN LEU GLU TYR LEU ASN VAL GLU TYR ASN SEQRES 10 A 240 ALA ILE GLN LEU ILE LEU PRO GLY THR PHE ASN ALA MET SEQRES 11 A 240 PRO LYS LEU ARG ILE LEU ILE LEU ASN ASN ASN LEU LEU SEQRES 12 A 240 ARG SER LEU PRO VAL ASP VAL PHE ALA GLY VAL SER LEU SEQRES 13 A 240 SER LYS LEU SER LEU HIS ASN ASN TYR PHE MET TYR LEU SEQRES 14 A 240 PRO VAL ALA GLY VAL LEU ASP GLN LEU THR SER ILE ILE SEQRES 15 A 240 GLN ILE ASP LEU HIS GLY ASN PRO TRP GLU CYS SER CYS SEQRES 16 A 240 THR ILE VAL PRO PHE LYS GLN TRP ALA GLU ARG LEU GLY SEQRES 17 A 240 SER GLU VAL LEU MET SER ASP LEU LYS CYS GLU THR PRO SEQRES 18 A 240 VAL ASN PHE PHE ARG LYS ASP PHE MET LEU LEU SER ASN SEQRES 19 A 240 ASP GLU ILE CYS PRO GLN SEQRES 1 B 240 CYS PRO GLY GLY CYS SER CYS ASP HIS ILE PRO GLY SER SEQRES 2 B 240 GLY LEU LYS MET ASN CYS ASN ASN ARG ASN VAL SER SER SEQRES 3 B 240 LEU ALA ASP LEU LYS PRO LYS LEU SER ASN VAL GLN GLU SEQRES 4 B 240 LEU PHE LEU ARG ASP ASN LYS ILE HIS SER ILE ARG LYS SEQRES 5 B 240 SER HIS PHE VAL ASP TYR LYS ASN LEU ILE LEU LEU ASP SEQRES 6 B 240 LEU GLY ASN ASN ASN ILE ALA THR VAL GLU ASN ASN THR SEQRES 7 B 240 PHE LYS ASN LEU LEU ASP LEU ARG TRP LEU TYR MET ASP SEQRES 8 B 240 SER ASN TYR LEU ASP THR LEU SER ARG GLU LYS PHE ALA SEQRES 9 B 240 GLY LEU GLN ASN LEU GLU TYR LEU ASN VAL GLU TYR ASN SEQRES 10 B 240 ALA ILE GLN LEU ILE LEU PRO GLY THR PHE ASN ALA MET SEQRES 11 B 240 PRO LYS LEU ARG ILE LEU ILE LEU ASN ASN ASN LEU LEU SEQRES 12 B 240 ARG SER LEU PRO VAL ASP VAL PHE ALA GLY VAL SER LEU SEQRES 13 B 240 SER LYS LEU SER LEU HIS ASN ASN TYR PHE MET TYR LEU SEQRES 14 B 240 PRO VAL ALA GLY VAL LEU ASP GLN LEU THR SER ILE ILE SEQRES 15 B 240 GLN ILE ASP LEU HIS GLY ASN PRO TRP GLU CYS SER CYS SEQRES 16 B 240 THR ILE VAL PRO PHE LYS GLN TRP ALA GLU ARG LEU GLY SEQRES 17 B 240 SER GLU VAL LEU MET SER ASP LEU LYS CYS GLU THR PRO SEQRES 18 B 240 VAL ASN PHE PHE ARG LYS ASP PHE MET LEU LEU SER ASN SEQRES 19 B 240 ASP GLU ILE CYS PRO GLN FORMUL 3 HOH *3(H2 O) HELIX 1 1 ARG A 391 VAL A 396 5 6 HELIX 2 2 ARG A 440 ALA A 444 5 5 HELIX 3 3 GLY A 465 ALA A 469 5 5 HELIX 4 4 ILE A 537 ARG A 546 1 10 HELIX 5 5 PRO A 561 PHE A 565 5 5 HELIX 6 6 SER A 573 CYS A 578 1 6 HELIX 7 7 ARG B 391 PHE B 395 5 5 HELIX 8 8 ARG B 440 ALA B 444 5 5 HELIX 9 9 GLY B 465 ALA B 469 5 5 HELIX 10 10 ILE B 537 ARG B 546 1 10 HELIX 11 11 PRO B 561 PHE B 565 5 5 HELIX 12 12 SER B 573 CYS B 578 1 6 SHEET 1 A 9 SER A 346 HIS A 349 0 SHEET 2 A 9 LEU A 355 ASN A 358 -1 O LYS A 356 N ASP A 348 SHEET 3 A 9 VAL A 377 PHE A 381 1 O GLU A 379 N MET A 357 SHEET 4 A 9 LEU A 403 ASP A 405 1 O ASP A 405 N LEU A 380 SHEET 5 A 9 TRP A 427 TYR A 429 1 O TRP A 427 N LEU A 404 SHEET 6 A 9 TYR A 451 ASN A 453 1 O TYR A 451 N LEU A 428 SHEET 7 A 9 ILE A 475 ILE A 477 1 O ILE A 477 N LEU A 452 SHEET 8 A 9 LYS A 498 SER A 500 1 O SER A 500 N LEU A 476 SHEET 9 A 9 GLN A 523 ASP A 525 1 O ASP A 525 N LEU A 499 SHEET 1 B 2 SER A 389 ILE A 390 0 SHEET 2 B 2 THR A 413 VAL A 414 1 O THR A 413 N ILE A 390 SHEET 1 C 2 THR A 437 LEU A 438 0 SHEET 2 C 2 LEU A 461 ILE A 462 1 O LEU A 461 N LEU A 438 SHEET 1 D 2 TRP A 531 GLU A 532 0 SHEET 2 D 2 CYS A 558 THR A 560 1 O GLU A 559 N TRP A 531 SHEET 1 E 9 SER B 346 ASP B 348 0 SHEET 2 E 9 LYS B 356 ASN B 358 -1 O ASN B 358 N SER B 346 SHEET 3 E 9 GLU B 379 ARG B 383 1 O PHE B 381 N MET B 357 SHEET 4 E 9 LEU B 403 GLY B 407 1 O LEU B 403 N LEU B 380 SHEET 5 E 9 TRP B 427 TYR B 429 1 O TYR B 429 N LEU B 404 SHEET 6 E 9 TYR B 451 ASN B 453 1 O TYR B 451 N LEU B 428 SHEET 7 E 9 ILE B 475 ILE B 477 1 O ILE B 477 N LEU B 452 SHEET 8 E 9 LYS B 498 SER B 500 1 O LYS B 498 N LEU B 476 SHEET 9 E 9 GLN B 523 ASP B 525 1 O GLN B 523 N LEU B 499 SHEET 1 F 2 SER B 389 ILE B 390 0 SHEET 2 F 2 THR B 413 VAL B 414 1 O THR B 413 N ILE B 390 SHEET 1 G 2 THR B 437 LEU B 438 0 SHEET 2 G 2 LEU B 461 ILE B 462 1 O LEU B 461 N LEU B 438 SHEET 1 H 2 TRP B 531 GLU B 532 0 SHEET 2 H 2 CYS B 558 THR B 560 1 O GLU B 559 N TRP B 531 SSBOND 1 CYS A 345 CYS A 359 1555 1555 2.03 SSBOND 2 CYS A 533 CYS A 558 1555 1555 2.03 SSBOND 3 CYS A 535 CYS A 578 1555 1555 2.35 SSBOND 4 CYS B 345 CYS B 359 1555 1555 2.47 SSBOND 5 CYS B 533 CYS B 558 1555 1555 2.03 SSBOND 6 CYS B 535 CYS B 578 1555 1555 2.03 CISPEP 1 PRO A 342 GLY A 343 0 -0.45 CISPEP 2 PRO A 351 GLY A 352 0 2.19 CISPEP 3 THR A 560 PRO A 561 0 0.79 CISPEP 4 SER B 353 GLY B 354 0 -6.14 CISPEP 5 LYS B 420 ASN B 421 0 0.59 CISPEP 6 LEU B 423 ASP B 424 0 -0.58 CISPEP 7 THR B 560 PRO B 561 0 -1.16 CRYST1 69.607 69.607 409.946 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014366 0.008294 0.000000 0.00000 SCALE2 0.000000 0.016589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002439 0.00000