HEADER ISOMERASE 17-SEP-14 4RCX TITLE TRICHOMONAS VAGINALIS TRIOSEPHOSPHATE ISOMERASE TVAG_497370 GENE (ILE- TITLE 2 45 VARIANT) LOOP 3 DELETION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 3 ORGANISM_TAXID: 5722; SOURCE 4 GENE: TVAG_497370; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS TIM BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LARA-GONZALEZ,P.JIMENEZ-SANDOVAL,P.ESTRELLA-HERNANDEZ,L.G.BRIEBA REVDAT 2 28-FEB-24 4RCX 1 REMARK SEQADV LINK REVDAT 1 30-SEP-15 4RCX 0 JRNL AUTH S.LARA-GONZALEZ,P.JIMENEZ-SANDOVAL,P.ESTRELLA-HERNANDEZ, JRNL AUTH 2 L.G.BRIEBA JRNL TITL TRICHOMONAS VAGINALIS TRIOSEPHOSPHATE ISOMERASE LOOP 3 JRNL TITL 2 DELETION PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1730) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9676 - 4.0036 0.93 2292 147 0.1668 0.1690 REMARK 3 2 4.0036 - 3.1789 1.00 2324 149 0.1624 0.1829 REMARK 3 3 3.1789 - 2.7774 1.00 2322 147 0.1850 0.2401 REMARK 3 4 2.7774 - 2.5236 1.00 2296 147 0.1803 0.1953 REMARK 3 5 2.5236 - 2.3428 1.00 2277 145 0.1827 0.2051 REMARK 3 6 2.3428 - 2.2047 1.00 2287 146 0.1693 0.2360 REMARK 3 7 2.2047 - 2.0943 1.00 2273 145 0.1693 0.2457 REMARK 3 8 2.0943 - 2.0032 1.00 2264 145 0.1697 0.2019 REMARK 3 9 2.0032 - 1.9261 1.00 2243 143 0.1752 0.1936 REMARK 3 10 1.9261 - 1.8596 1.00 2270 146 0.1758 0.2145 REMARK 3 11 1.8596 - 1.8015 1.00 2248 142 0.1831 0.2422 REMARK 3 12 1.8015 - 1.7500 1.00 2248 144 0.1952 0.2722 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1804 REMARK 3 ANGLE : 1.626 2452 REMARK 3 CHIRALITY : 0.091 283 REMARK 3 PLANARITY : 0.008 320 REMARK 3 DIHEDRAL : 11.286 631 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6675 10.6846 -20.9597 REMARK 3 T TENSOR REMARK 3 T11: 0.1307 T22: 0.1356 REMARK 3 T33: 0.1779 T12: -0.0071 REMARK 3 T13: 0.0672 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 4.9064 L22: 0.7644 REMARK 3 L33: 2.0312 L12: -1.8813 REMARK 3 L13: 1.4932 L23: -0.4375 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.1115 S13: -0.3957 REMARK 3 S21: 0.1537 S22: -0.0640 S23: 0.3693 REMARK 3 S31: 0.1355 S32: -0.0334 S33: 0.9345 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 8:35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3918 27.6940 -15.7882 REMARK 3 T TENSOR REMARK 3 T11: 0.2319 T22: 0.2320 REMARK 3 T33: 0.3127 T12: 0.0028 REMARK 3 T13: 0.0409 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.8205 L22: 0.7753 REMARK 3 L33: 1.7729 L12: -0.0700 REMARK 3 L13: 0.3703 L23: -1.1541 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: 0.0057 S13: 0.0957 REMARK 3 S21: 0.1307 S22: -0.0192 S23: -0.0533 REMARK 3 S31: -0.4251 S32: -0.1483 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 36:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0051 21.6162 -8.7404 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.2069 REMARK 3 T33: 0.2103 T12: -0.0278 REMARK 3 T13: 0.0555 T23: -0.0734 REMARK 3 L TENSOR REMARK 3 L11: 0.8308 L22: 1.7799 REMARK 3 L33: 0.9749 L12: 0.0046 REMARK 3 L13: -0.7786 L23: -0.1818 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.2550 S13: 0.0567 REMARK 3 S21: 0.3813 S22: -0.1416 S23: -0.0394 REMARK 3 S31: 0.0532 S32: -0.1316 S33: -0.0231 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 72:93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0651 19.1038 -3.8455 REMARK 3 T TENSOR REMARK 3 T11: 0.3402 T22: 0.2839 REMARK 3 T33: 0.2727 T12: -0.0813 REMARK 3 T13: 0.0724 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 0.6631 L22: 1.2297 REMARK 3 L33: 1.4669 L12: -0.8678 REMARK 3 L13: 0.1082 L23: 0.2324 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: -0.0091 S13: 0.2752 REMARK 3 S21: 0.1115 S22: 0.0143 S23: -0.1098 REMARK 3 S31: -0.0746 S32: 0.1705 S33: 0.0012 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 101:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8866 11.3722 -0.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.5284 T22: 0.4757 REMARK 3 T33: 0.1619 T12: -0.0708 REMARK 3 T13: -0.0284 T23: 0.0912 REMARK 3 L TENSOR REMARK 3 L11: 0.6774 L22: 0.4438 REMARK 3 L33: 0.4718 L12: -0.4925 REMARK 3 L13: 0.5017 L23: -0.2722 REMARK 3 S TENSOR REMARK 3 S11: -0.2257 S12: -0.1888 S13: 0.0367 REMARK 3 S21: 0.4529 S22: 0.0622 S23: -0.0761 REMARK 3 S31: -0.2311 S32: 0.0610 S33: -0.2308 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 115:127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8169 18.5157 -15.4463 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.2739 REMARK 3 T33: 0.2062 T12: -0.0188 REMARK 3 T13: 0.0053 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.2948 L22: 0.1793 REMARK 3 L33: 0.2967 L12: -0.1217 REMARK 3 L13: -0.1230 L23: 0.1509 REMARK 3 S TENSOR REMARK 3 S11: 0.1171 S12: -0.2064 S13: 0.0125 REMARK 3 S21: 0.1351 S22: -0.0303 S23: -0.1622 REMARK 3 S31: 0.0533 S32: 0.1322 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 128:160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0488 10.2200 -13.1608 REMARK 3 T TENSOR REMARK 3 T11: 0.2299 T22: 0.2355 REMARK 3 T33: 0.2561 T12: 0.0186 REMARK 3 T13: -0.0233 T23: 0.0841 REMARK 3 L TENSOR REMARK 3 L11: 0.9178 L22: 0.5725 REMARK 3 L33: 0.8441 L12: 0.1794 REMARK 3 L13: 0.0744 L23: 0.1844 REMARK 3 S TENSOR REMARK 3 S11: 0.0839 S12: -0.3646 S13: -0.2811 REMARK 3 S21: 0.3612 S22: -0.1196 S23: -0.3290 REMARK 3 S31: 0.1326 S32: 0.2127 S33: 0.0124 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 161:186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0997 17.0030 -24.1312 REMARK 3 T TENSOR REMARK 3 T11: 0.2246 T22: 0.2137 REMARK 3 T33: 0.2458 T12: -0.0048 REMARK 3 T13: 0.0207 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.7971 L22: 0.6640 REMARK 3 L33: 1.0288 L12: 0.6980 REMARK 3 L13: -0.0919 L23: -0.3131 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: -0.0094 S13: 0.0195 REMARK 3 S21: -0.1868 S22: 0.1644 S23: -0.2770 REMARK 3 S31: -0.1453 S32: 0.0621 S33: 0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 187:217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2664 11.5934 -22.4117 REMARK 3 T TENSOR REMARK 3 T11: 0.1137 T22: 0.1695 REMARK 3 T33: 0.1452 T12: 0.0008 REMARK 3 T13: 0.0317 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.4133 L22: 0.7035 REMARK 3 L33: 2.2940 L12: 0.3488 REMARK 3 L13: -0.2858 L23: 1.1734 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.0393 S13: -0.0443 REMARK 3 S21: -0.0144 S22: -0.0418 S23: -0.0151 REMARK 3 S31: 0.1068 S32: 0.1556 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 218:246 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8629 19.2400 -24.7477 REMARK 3 T TENSOR REMARK 3 T11: 0.1895 T22: 0.2023 REMARK 3 T33: 0.1991 T12: -0.0028 REMARK 3 T13: 0.0216 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.7541 L22: 0.5026 REMARK 3 L33: 2.0103 L12: 0.5514 REMARK 3 L13: -0.1340 L23: -0.2362 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: 0.1969 S13: 0.1938 REMARK 3 S21: -0.0770 S22: -0.1268 S23: 0.0420 REMARK 3 S31: -0.1082 S32: -0.1097 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4RCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29120 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.963 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE, 18 % PEG 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.93000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 56.73000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 68 REMARK 465 PRO A 69 REMARK 465 ASN A 70 REMARK 465 GLY A 71 REMARK 465 ILE A 94 REMARK 465 LEU A 95 REMARK 465 LYS A 96 REMARK 465 GLU A 97 REMARK 465 ASP A 98 REMARK 465 ASP A 99 REMARK 465 GLU A 100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 PHE A 66 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 67 OG1 CG2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 93 CG OD1 OD2 REMARK 470 PHE A 101 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 GLN A 174 CG CD OE1 NE2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -140.08 54.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 216 O REMARK 620 2 CYS A 218 O 94.1 REMARK 620 3 VAL A 221 O 111.1 93.4 REMARK 620 4 SER A 245 OG 83.7 157.9 108.0 REMARK 620 5 HOH A 483 O 158.3 94.1 88.3 81.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O4V RELATED DB: PDB REMARK 900 LOOP 3 DELETION PROTEIN DBREF 4RCX A 1 246 UNP A2EGX9 A2EGX9_TRIVA 1 252 SEQADV 4RCX GLY A -2 UNP A2EGX9 EXPRESSION TAG SEQADV 4RCX PRO A -1 UNP A2EGX9 EXPRESSION TAG SEQADV 4RCX HIS A 0 UNP A2EGX9 EXPRESSION TAG SEQADV 4RCX A UNP A2EGX9 ALA 72 DELETION SEQADV 4RCX A UNP A2EGX9 PHE 73 DELETION SEQADV 4RCX A UNP A2EGX9 THR 74 DELETION SEQADV 4RCX A UNP A2EGX9 GLY 75 DELETION SEQADV 4RCX A UNP A2EGX9 GLU 76 DELETION SEQADV 4RCX A UNP A2EGX9 VAL 77 DELETION SEQRES 1 A 249 GLY PRO HIS MET ARG THR PHE PHE VAL GLY GLY ASN TRP SEQRES 2 A 249 LYS ALA ASN PRO LYS THR VAL GLU GLU ALA GLU LYS LEU SEQRES 3 A 249 ILE GLU MET LEU ASN GLY ALA LYS VAL GLU GLY ASN VAL SEQRES 4 A 249 GLU VAL VAL VAL ALA ALA PRO PHE ILE PHE LEU PRO THR SEQRES 5 A 249 LEU GLN GLN LYS LEU ARG LYS ASP TRP LYS VAL SER ALA SEQRES 6 A 249 GLU ASN VAL PHE THR LYS PRO ASN GLY THR VAL PRO MET SEQRES 7 A 249 ILE LYS SER PHE GLY ILE GLU TRP THR ILE LEU GLY HIS SEQRES 8 A 249 SER GLU ARG ARG ASP ILE LEU LYS GLU ASP ASP GLU PHE SEQRES 9 A 249 LEU ALA ALA LYS ALA LYS PHE ALA LEU GLU ASN GLY MET SEQRES 10 A 249 LYS ILE ILE TYR CYS CYS GLY GLU HIS LEU SER GLU ARG SEQRES 11 A 249 GLU ALA GLY LYS ALA SER GLU PHE VAL SER ALA GLN ILE SEQRES 12 A 249 GLU LYS MET ILE PRO ALA ILE PRO ALA GLY LYS TRP ASP SEQRES 13 A 249 ASP VAL VAL ILE ALA TYR GLU PRO ILE TRP ALA ILE GLY SEQRES 14 A 249 THR GLY LYS VAL ALA SER THR GLN ASP ALA GLN GLU MET SEQRES 15 A 249 CYS LYS VAL ILE ARG ASP ILE LEU ALA ALA LYS VAL GLY SEQRES 16 A 249 ALA ASP ILE ALA ASN LYS VAL ARG ILE LEU TYR GLY GLY SEQRES 17 A 249 SER VAL LYS PRO ASN ASN CYS ASN GLU LEU ALA ALA CYS SEQRES 18 A 249 PRO ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER LEU SEQRES 19 A 249 GLU PRO GLY PHE ILE ASN ILE VAL ASN SER ASN VAL HIS SEQRES 20 A 249 SER LYS HET NA A 301 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *140(H2 O) HELIX 1 1 THR A 16 GLY A 29 1 14 HELIX 2 2 PRO A 43 ILE A 45 5 3 HELIX 3 3 PHE A 46 LEU A 54 1 9 HELIX 4 4 VAL A 73 PHE A 79 1 7 HELIX 5 5 HIS A 88 ASP A 93 1 6 HELIX 6 6 LEU A 102 ASN A 112 1 11 HELIX 7 7 HIS A 123 ALA A 129 1 7 HELIX 8 8 LYS A 131 ILE A 144 1 14 HELIX 9 9 PRO A 145 ILE A 147 5 3 HELIX 10 10 LYS A 151 ASP A 153 5 3 HELIX 11 11 PRO A 161 ILE A 165 5 5 HELIX 12 12 SER A 172 GLY A 192 1 21 HELIX 13 13 GLY A 192 VAL A 199 1 8 HELIX 14 14 ASN A 211 ALA A 217 1 7 HELIX 15 15 GLY A 227 GLU A 232 5 6 HELIX 16 16 PRO A 233 ASN A 240 1 8 HELIX 17 17 SER A 241 SER A 245 5 5 SHEET 1 A 9 PHE A 4 ASN A 9 0 SHEET 2 A 9 VAL A 36 ALA A 42 1 O ALA A 41 N GLY A 8 SHEET 3 A 9 LYS A 59 ALA A 62 1 O SER A 61 N VAL A 40 SHEET 4 A 9 TRP A 83 LEU A 86 1 O TRP A 83 N ALA A 62 SHEET 5 A 9 LYS A 115 CYS A 120 1 O CYS A 119 N LEU A 86 SHEET 6 A 9 VAL A 155 TYR A 159 1 O VAL A 156 N TYR A 118 SHEET 7 A 9 ARG A 200 TYR A 203 1 O LEU A 202 N ILE A 157 SHEET 8 A 9 GLY A 223 VAL A 226 1 O GLY A 223 N TYR A 203 SHEET 9 A 9 PHE A 4 ASN A 9 1 N GLY A 7 O VAL A 226 LINK O ALA A 216 NA NA A 301 1555 1555 2.37 LINK O CYS A 218 NA NA A 301 1555 1555 2.41 LINK O VAL A 221 NA NA A 301 1555 1555 2.28 LINK OG SER A 245 NA NA A 301 1555 1555 2.41 LINK NA NA A 301 O HOH A 483 1555 1555 2.43 CISPEP 1 ASN A 13 PRO A 14 0 -10.58 SITE 1 AC1 5 ALA A 216 CYS A 218 VAL A 221 SER A 245 SITE 2 AC1 5 HOH A 483 CRYST1 46.970 56.730 105.860 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021290 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009446 0.00000