HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-SEP-14 4RDB TITLE CRYSTAL STRUCTURE OF AN IMMUNOREACTIVE 32 KDA ANTIGEN PG49 (PG_0181) TITLE 2 FROM PORPHYROMONAS GINGIVALIS W83 AT 1.45 A RESOLUTION (PSI COMMUNITY TITLE 3 TARGET, NAKAYAMA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOREACTIVE 32 KDA ANTIGEN PG49; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 STRAIN: W83; SOURCE 5 GENE: PG_0181; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE CELL ADHESION PROTEIN, PF16249 FAMILY, DUF4906, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4RDB 1 REMARK SEQADV REVDAT 4 22-APR-20 4RDB 1 JRNL LINK REVDAT 3 24-JAN-18 4RDB 1 JRNL REVDAT 2 22-NOV-17 4RDB 1 REMARK REVDAT 1 03-DEC-14 4RDB 0 JRNL AUTH Q.XU,M.SHOJI,S.SHIBATA,M.NAITO,K.SATO,M.A.ELSLIGER, JRNL AUTH 2 J.C.GRANT,H.L.AXELROD,H.J.CHIU,C.L.FARR,L.JAROSZEWSKI, JRNL AUTH 3 M.W.KNUTH,A.M.DEACON,A.GODZIK,S.A.LESLEY,M.A.CURTIS, JRNL AUTH 4 K.NAKAYAMA,I.A.WILSON JRNL TITL A DISTINCT TYPE OF PILUS FROM THE HUMAN MICROBIOME. JRNL REF CELL V. 165 690 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27062925 JRNL DOI 10.1016/J.CELL.2016.03.016 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 55846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2833 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3826 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.332 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2593 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2519 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3529 ; 1.605 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5818 ; 0.779 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 6.415 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;34.035 ;24.561 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;10.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.957 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2906 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 562 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1256 ; 1.729 ; 0.989 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1254 ; 1.728 ; 0.988 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1575 ; 1.975 ; 1.488 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5112 ;11.703 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 133 ;29.418 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5361 ; 9.542 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. EDO AND ACETONE (ACN) MODELED WAS PRESENT IN REMARK 3 CRYSTALLIZATION/CRYO CONDITIONS. REMARK 4 REMARK 4 4RDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184,0.9791 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : RHODIUM-COATED VERTICAL AND REMARK 200 HORIZONTAL FOCUSING MIRRORS; REMARK 200 LIQUID-NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE JANUARY 10, 2014 REMARK 200 BUILT=20140307 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 43.411 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.71400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17M SODIUM ACETATE, 15.0% GLYCEROL, REMARK 280 28.5% POLYETHYLENE GLYCOL 4000, 4.0% ACETONE, 0.1M TRIS PH 9.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.81800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.32250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.41050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.32250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.81800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.41050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 48 REMARK 465 VAL A 49 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 129 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 179 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACN A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-425089 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 30-333 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4RDB A 30 333 UNP Q7MXK0 Q7MXK0_PORGI 30 333 SEQADV 4RDB GLY A 0 UNP Q7MXK0 EXPRESSION TAG SEQRES 1 A 305 GLY ASP ARG SER ILE GLU ILE SER ILE ARG VAL ASP ASP SEQRES 2 A 305 PHE THR LYS THR GLY GLU ALA VAL ARG TYR GLU ARG ASN SEQRES 3 A 305 GLN GLY SER ALA ALA GLU ARG LEU ILE THR ASN LEU TYR SEQRES 4 A 305 LEU LEU LEU PHE ASP GLN SER GLY ALA ASN PRO ALA LYS SEQRES 5 A 305 TYR TYR ILE THR GLY ASN THR PHE THR GLY GLY THR TRP SEQRES 6 A 305 LEU PRO ASP ASP MSE LYS VAL LYS LEU ASP MSE THR GLN SEQRES 7 A 305 SER GLU ALA GLY GLU ARG LYS VAL TYR VAL VAL ALA ASN SEQRES 8 A 305 VAL ASP ASN ALA VAL LYS THR ALA LEU ASP ALA VAL ALA SEQRES 9 A 305 ASN GLU SER ASP LEU GLN THR VAL LYS ARG THR THR ALA SEQRES 10 A 305 MSE PRO TRP SER THR ASP ILE ALA SER PRO PHE LEU MSE SEQRES 11 A 305 SER GLY ASN LYS THR HIS ASP PHE LEU ALA ASN ARG LEU SEQRES 12 A 305 LEU ASP ASN VAL PRO LEU VAL ARG ALA ILE ALA LYS VAL SEQRES 13 A 305 GLU LEU ASN ILE SER LEU SER GLU LYS PHE GLN ILE VAL SEQRES 14 A 305 PRO ILE ILE VAL ASN GLY SER LEU SER GLU PHE LYS PHE SEQRES 15 A 305 ARG TYR VAL ASN PHE ASP LYS GLU THR TYR VAL VAL LYS SEQRES 16 A 305 PRO THR THR LYS PRO ASP ASN LEU ILE SER SER ALA ASN SEQRES 17 A 305 GLY VAL TRP PRO GLN ILE THR ASP TRP THR VAL TRP GLY SEQRES 18 A 305 ALA SER LEU ASN THR SER PRO ALA PRO ASP ALA GLY THR SEQRES 19 A 305 GLY TYR THR LEU ASP ALA ASN GLY LYS VAL THR ALA LEU SEQRES 20 A 305 ARG ILE VAL THR TYR LEU ASN GLU ARG ASP SER LYS GLY SEQRES 21 A 305 ALA THR VAL GLU VAL ALA LEU PRO ARG VAL ASP ASP GLY SEQRES 22 A 305 THR LEU PRO PRO PRO GLU PHE GLY PRO GLU LEU TYR ARG SEQRES 23 A 305 LEU PRO LEU PRO ASP LYS ILE LEU ARG ASN HIS TRP TYR SEQRES 24 A 305 LYS TYR GLU VAL GLU ILE MODRES 4RDB MSE A 98 MET SELENOMETHIONINE MODRES 4RDB MSE A 104 MET SELENOMETHIONINE MODRES 4RDB MSE A 146 MET SELENOMETHIONINE MODRES 4RDB MSE A 158 MET SELENOMETHIONINE HET MSE A 98 13 HET MSE A 104 8 HET MSE A 146 8 HET MSE A 158 8 HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET ACN A 414 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACN ACETONE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 EDO 13(C2 H6 O2) FORMUL 15 ACN C3 H6 O FORMUL 16 HOH *420(H2 O) HELIX 1 1 SER A 57 LEU A 62 1 6 HELIX 2 2 PRO A 95 ASP A 97 5 3 HELIX 3 3 GLN A 106 GLY A 110 1 5 HELIX 4 4 ASP A 121 VAL A 131 1 11 HELIX 5 5 ASN A 133 THR A 139 5 7 HELIX 6 6 GLU A 192 GLN A 195 5 4 HELIX 7 7 ALA A 250 THR A 254 5 5 HELIX 8 8 PRO A 304 PHE A 308 5 5 SHEET 1 A 9 ALA A 79 ILE A 83 0 SHEET 2 A 9 LEU A 66 PHE A 71 -1 N LEU A 66 O ILE A 83 SHEET 3 A 9 GLU A 111 ALA A 118 -1 O TYR A 115 N LEU A 69 SHEET 4 A 9 MSE A 158 ASP A 165 -1 O HIS A 164 N ARG A 112 SHEET 5 A 9 LEU A 171 ARG A 179 -1 O VAL A 178 N SER A 159 SHEET 6 A 9 SER A 32 VAL A 39 1 N ARG A 38 O LEU A 177 SHEET 7 A 9 LYS A 99 THR A 105 -1 O VAL A 100 N ILE A 35 SHEET 8 A 9 GLY A 91 LEU A 94 -1 N THR A 92 O LYS A 101 SHEET 9 A 9 THR A 87 PHE A 88 -1 N PHE A 88 O GLY A 91 SHEET 1 B 6 GLU A 52 ASN A 54 0 SHEET 2 B 6 PHE A 42 THR A 45 -1 N LYS A 44 O GLU A 52 SHEET 3 B 6 HIS A 325 ILE A 333 1 O TRP A 326 N THR A 43 SHEET 4 B 6 ILE A 181 LEU A 190 1 N GLU A 185 O TYR A 327 SHEET 5 B 6 VAL A 272 ASN A 282 -1 O LEU A 281 N ALA A 182 SHEET 6 B 6 GLY A 261 LEU A 266 -1 N THR A 265 O THR A 273 SHEET 1 C 2 LYS A 141 THR A 143 0 SHEET 2 C 2 GLU A 218 TYR A 220 -1 O THR A 219 N ARG A 142 SHEET 1 D 3 ILE A 200 VAL A 201 0 SHEET 2 D 3 SER A 204 VAL A 213 -1 O SER A 204 N VAL A 201 SHEET 3 D 3 THR A 246 TRP A 248 -1 O THR A 246 N PHE A 210 SHEET 1 E 4 ILE A 200 VAL A 201 0 SHEET 2 E 4 SER A 204 VAL A 213 -1 O SER A 204 N VAL A 201 SHEET 3 E 4 THR A 290 LEU A 295 -1 O ALA A 294 N LYS A 209 SHEET 4 E 4 GLU A 311 PRO A 316 -1 O LEU A 315 N VAL A 291 SHEET 1 F 2 PHE A 215 ASP A 216 0 SHEET 2 F 2 LEU A 231 ILE A 232 -1 O ILE A 232 N PHE A 215 LINK C ASP A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N LYS A 99 1555 1555 1.33 LINK C ASP A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N THR A 105 1555 1555 1.34 LINK C ALA A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N PRO A 147 1555 1555 1.35 LINK C LEU A 157 N MSE A 158 1555 1555 1.34 LINK C MSE A 158 N SER A 159 1555 1555 1.34 CISPEP 1 SER A 149 THR A 150 0 7.26 CISPEP 2 SER A 154 PRO A 155 0 0.79 CISPEP 3 ASP A 173 ASN A 174 0 9.24 CISPEP 4 TRP A 239 PRO A 240 0 7.46 CISPEP 5 SER A 255 PRO A 256 0 -7.37 SITE 1 AC1 6 TRP A 148 PHE A 210 THR A 246 ACN A 414 SITE 2 AC1 6 HOH A 634 HOH A 790 SITE 1 AC2 4 ASN A 77 MSE A 104 GLU A 108 ARG A 112 SITE 1 AC3 6 TYR A 81 TYR A 82 THR A 89 EDO A 408 SITE 2 AC3 6 EDO A 409 HOH A 612 SITE 1 AC4 8 PHE A 194 GLU A 311 LEU A 312 TYR A 313 SITE 2 AC4 8 ILE A 333 EDO A 412 HOH A 695 HOH A 900 SITE 1 AC5 6 SER A 36 ILE A 37 ARG A 38 MSE A 98 SITE 2 AC5 6 THR A 254 HOH A 876 SITE 1 AC6 7 ARG A 142 ASP A 151 ALA A 153 PRO A 155 SITE 2 AC6 7 HOH A 691 HOH A 736 HOH A 897 SITE 1 AC7 4 ASP A 72 GLN A 73 ALA A 109 GLU A 111 SITE 1 AC8 6 TYR A 67 LYS A 125 ASP A 129 EDO A 403 SITE 2 AC8 6 HOH A 713 HOH A 832 SITE 1 AC9 8 TYR A 82 ILE A 83 THR A 84 GLY A 85 SITE 2 AC9 8 PHE A 88 PRO A 306 EDO A 403 HOH A 737 SITE 1 BC1 6 THR A 139 LYS A 141 ILE A 199 ILE A 200 SITE 2 BC1 6 TYR A 220 HOH A 564 SITE 1 BC2 5 ARG A 31 PRO A 198 GLY A 270 HOH A 774 SITE 2 BC2 5 HOH A 891 SITE 1 BC3 6 GLN A 73 LEU A 312 TYR A 313 ARG A 314 SITE 2 BC3 6 EDO A 404 HOH A 742 SITE 1 BC4 8 ARG A 38 ASP A 40 ASP A 41 ARG A 53 SITE 2 BC4 8 PRO A 256 HOH A 598 HOH A 715 HOH A 875 SITE 1 BC5 6 SER A 149 TYR A 212 GLY A 261 VAL A 278 SITE 2 BC5 6 EDO A 401 HOH A 616 CRYST1 39.636 86.821 90.645 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025230 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011032 0.00000