data_4RDU # _entry.id 4RDU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4RDU pdb_00004rdu 10.2210/pdb4rdu/pdb NDB NA3178 ? ? RCSB RCSB087222 ? ? WWPDB D_1000087222 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-430652 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4RDU _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-09-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for Stem Cell Biology (STEMCELL)' 2 # _citation.id primary _citation.title 'Crystal structure of a distal-less homeobox protein 5 (Dlx5) from Homo sapiens at 1.85 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for Stem Cell Biology (STEMCELL)' 2 ? # _cell.entry_id 4RDU _cell.length_a 34.182 _cell.length_b 42.913 _cell.length_c 56.104 _cell.angle_alpha 84.130 _cell.angle_beta 77.330 _cell.angle_gamma 67.130 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RDU _symmetry.Int_Tables_number 1 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Homeobox protein DLX-5' 7663.090 2 ? ? 'DNA binding residues 137-198' ? 2 polymer syn '(DC)(DG)(DA)(DC)(DT)(DA)(DA)(DT)(DT)(DA)(DG)(DT)(DC)(DG)' 4279.804 4 ? ? ? ? 3 water nat water 18.015 233 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GHMVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKN GHMVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKN A,D JCSG-430652 2 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DC)(DT)(DA)(DA)(DT)(DT)(DA)(DG)(DT)(DC)(DG)' CGACTAATTAGTCG B,C,E,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 VAL n 1 5 ARG n 1 6 LYS n 1 7 PRO n 1 8 ARG n 1 9 THR n 1 10 ILE n 1 11 TYR n 1 12 SER n 1 13 SER n 1 14 PHE n 1 15 GLN n 1 16 LEU n 1 17 ALA n 1 18 ALA n 1 19 LEU n 1 20 GLN n 1 21 ARG n 1 22 ARG n 1 23 PHE n 1 24 GLN n 1 25 LYS n 1 26 THR n 1 27 GLN n 1 28 TYR n 1 29 LEU n 1 30 ALA n 1 31 LEU n 1 32 PRO n 1 33 GLU n 1 34 ARG n 1 35 ALA n 1 36 GLU n 1 37 LEU n 1 38 ALA n 1 39 ALA n 1 40 SER n 1 41 LEU n 1 42 GLY n 1 43 LEU n 1 44 THR n 1 45 GLN n 1 46 THR n 1 47 GLN n 1 48 VAL n 1 49 LYS n 1 50 ILE n 1 51 TRP n 1 52 PHE n 1 53 GLN n 1 54 ASN n 1 55 LYS n 1 56 ARG n 1 57 SER n 1 58 LYS n 1 59 ILE n 1 60 LYS n 1 61 LYS n 1 62 ILE n 1 63 MET n 1 64 LYS n 1 65 ASN n 2 1 DC n 2 2 DG n 2 3 DA n 2 4 DC n 2 5 DT n 2 6 DA n 2 7 DA n 2 8 DT n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DT n 2 13 DC n 2 14 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC006226, DLX5' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28bGB1Tev _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DLX5_HUMAN P56178 1 KKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKN 135 ? 2 PDB 4RDU 4RDU 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4RDU A 2 ? 65 ? P56178 135 ? 198 ? 135 198 2 1 4RDU D 2 ? 65 ? P56178 135 ? 198 ? 135 198 3 2 4RDU B 1 ? 14 ? 4RDU 1 ? 14 ? 1 14 4 2 4RDU C 1 ? 14 ? 4RDU 1 ? 14 ? 1 14 5 2 4RDU E 1 ? 14 ? 4RDU 1 ? 14 ? 1 14 6 2 4RDU F 1 ? 14 ? 4RDU 1 ? 14 ? 1 14 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RDU GLY A 1 ? UNP P56178 ? ? 'expression tag' 0 1 1 4RDU HIS A 2 ? UNP P56178 LYS 135 'engineered mutation' 135 2 1 4RDU MET A 3 ? UNP P56178 LYS 136 'engineered mutation' 136 3 2 4RDU GLY D 1 ? UNP P56178 ? ? 'expression tag' 0 4 2 4RDU HIS D 2 ? UNP P56178 LYS 135 'engineered mutation' 135 5 2 4RDU MET D 3 ? UNP P56178 LYS 136 'engineered mutation' 136 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4RDU # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details ;0.08M sodium chloride, 45.00% 2-methyl-2,4-pentanediol, 0.012M spermine tetrahydrochloride, 0.1M sodium cacodylate pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 289K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Vertical focusing mirror; double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2014-07-24 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL14-1 _diffrn_source.type 'SSRL BEAMLINE BL14-1' _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4RDU _reflns.d_resolution_high 1.85 _reflns.d_resolution_low 22.303 _reflns.number_all 23348 _reflns.number_obs 23348 _reflns.pdbx_netI_over_sigmaI 8.000 _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_redundancy 1.900 _reflns.percent_possible_obs 95.500 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate 33.646 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.850 1.900 ? 3315 ? 0.271 2.5 0.271 ? 1.900 ? 1723 94.100 1 1 1.900 1.950 ? 3173 ? 0.230 3.0 0.230 ? 1.900 ? 1655 95.000 2 1 1.950 2.010 ? 3145 ? 0.184 3.5 0.184 ? 1.900 ? 1635 95.100 3 1 2.010 2.070 ? 3048 ? 0.141 4.6 0.141 ? 1.900 ? 1590 94.900 4 1 2.070 2.140 ? 2954 ? 0.114 5.8 0.114 ? 1.900 ? 1533 95.200 5 1 2.140 2.210 ? 2825 ? 0.094 6.7 0.094 ? 1.900 ? 1468 95.800 6 1 2.210 2.290 ? 2789 ? 0.093 5.6 0.093 ? 1.900 ? 1452 95.700 7 1 2.290 2.390 ? 2722 ? 0.075 8.7 0.075 ? 1.900 ? 1422 96.300 8 1 2.390 2.490 ? 2530 ? 0.067 8.5 0.067 ? 1.900 ? 1305 95.600 9 1 2.490 2.620 ? 2460 ? 0.062 9.9 0.062 ? 1.900 ? 1280 96.000 10 1 2.620 2.760 ? 2296 ? 0.055 10.4 0.055 ? 1.900 ? 1195 96.400 11 1 2.760 2.930 ? 2256 ? 0.052 11.1 0.052 ? 1.900 ? 1172 96.700 12 1 2.930 3.130 ? 2123 ? 0.042 14.2 0.042 ? 1.900 ? 1099 96.600 13 1 3.130 3.380 ? 1912 ? 0.043 5.1 0.043 ? 1.900 ? 997 96.900 14 1 3.380 3.700 ? 1806 ? 0.040 7.6 0.040 ? 1.900 ? 934 97.100 15 1 3.700 4.140 ? 1624 ? 0.030 18.2 0.030 ? 1.900 ? 843 97.100 16 1 4.140 4.780 ? 1477 ? 0.038 13.3 0.038 ? 1.900 ? 763 97.700 17 1 4.780 5.850 ? 1189 ? 0.038 13.3 0.038 ? 1.900 ? 616 97.300 18 1 5.850 8.270 ? 938 ? 0.050 10.9 0.050 ? 1.900 ? 486 96.400 19 1 8.270 22.303 ? 322 ? 0.047 14.4 0.047 ? 1.800 ? 180 66.100 20 1 # _refine.entry_id 4RDU _refine.ls_d_res_high 1.8500 _refine.ls_d_res_low 22.303 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.1400 _refine.ls_number_reflns_obs 23315 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3.TLS GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD (MOTION DETERMINATION) SERVER. 4. WATERS WERE EXCLUDED FROM TLS ASSIGNMENT. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1850 _refine.ls_R_factor_R_work 0.1829 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2252 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1188 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 47.0789 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.7900 _refine.aniso_B[2][2] -3.4400 _refine.aniso_B[3][3] 3.5300 _refine.aniso_B[1][2] 1.6800 _refine.aniso_B[1][3] 0.9400 _refine.aniso_B[2][3] -1.4100 _refine.correlation_coeff_Fo_to_Fc 0.9710 _refine.correlation_coeff_Fo_to_Fc_free 0.9560 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1530 _refine.pdbx_overall_ESU_R_Free 0.1420 _refine.overall_SU_ML 0.1020 _refine.overall_SU_B 6.4920 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1IG7 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 158.200 _refine.B_iso_min 20.440 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.330 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1008 _refine_hist.pdbx_number_atoms_nucleic_acid 1114 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 233 _refine_hist.number_atoms_total 2355 _refine_hist.d_res_high 1.8500 _refine_hist.d_res_low 22.303 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2313 0.011 0.015 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1732 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3352 1.316 1.515 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 4015 1.409 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 133 4.955 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 47 30.428 21.915 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 224 13.370 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 13 23.005 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 324 0.100 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1830 0.009 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 527 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 'X-RAY DIFFRACTION' 1 1 'MEDIUM POSITIONAL' A 916 0.370 0.500 1 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM THERMAL' A 916 5.210 2.000 2 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 'MEDIUM POSITIONAL' B 443 0.380 0.500 3 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 'MEDIUM THERMAL' B 443 11.360 2.000 4 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 3 1 'MEDIUM POSITIONAL' C 410 0.350 0.500 5 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 3 1 'MEDIUM THERMAL' C 410 6.410 2.000 6 ? ? ? ? ? ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.8970 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 90.8400 _refine_ls_shell.number_reflns_R_work 1571 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3070 _refine_ls_shell.R_factor_R_free 0.2930 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1656 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 D 2 1 B 2 2 E 3 1 C 3 2 F # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A ARG 5 . A ASN 65 . A ARG 138 A ASN 198 4 ? 1 2 1 D ARG 5 . D ASN 65 . D ARG 138 D ASN 198 4 ? 2 1 1 B DC 1 . B DG 14 . B DC 1 B DG 14 4 ? 2 2 1 E DC 1 . E DG 14 . E DC 1 E DG 14 4 ? 3 1 1 C DC 1 . C DC 13 . C DC 1 C DC 13 4 ? 3 2 1 F DC 1 . F DC 13 . F DC 1 F DC 13 4 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? # _struct.entry_id 4RDU _struct.title 'Crystal structure of a distal-less homeobox protein 5 (Dlx5) from Homo sapiens at 1.85 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PF00046 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSCRIPTION, TRANSCRIPTION-DNA complex, Partnership for Stem Cell Biology, STEMCELL ; _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.entry_id 4RDU # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 12 ? THR A 26 ? SER A 145 THR A 159 1 ? 15 HELX_P HELX_P2 2 ALA A 30 ? LEU A 41 ? ALA A 163 LEU A 174 1 ? 12 HELX_P HELX_P3 3 THR A 44 ? LYS A 64 ? THR A 177 LYS A 197 1 ? 21 HELX_P HELX_P4 4 SER D 12 ? THR D 26 ? SER D 145 THR D 159 1 ? 15 HELX_P HELX_P5 5 ALA D 30 ? LEU D 41 ? ALA D 163 LEU D 174 1 ? 12 HELX_P HELX_P6 6 THR D 44 ? ASN D 65 ? THR D 177 ASN D 198 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 13 N3 ? ? B DG 2 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 13 O2 ? ? B DG 2 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 13 N4 ? ? B DG 2 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 12 N3 ? ? B DA 3 C DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 12 O4 ? ? B DA 3 C DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 4 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 4 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 4 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 6 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 6 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 7 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 7 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 7 N1 ? ? B DT 8 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 7 N6 ? ? B DT 8 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 9 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 9 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 10 C DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 10 C DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 12 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 12 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 13 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 13 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 13 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 14 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 14 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 14 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 13 N3 ? ? E DG 2 F DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 13 O2 ? ? E DG 2 F DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 13 N4 ? ? E DG 2 F DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DA 3 N1 ? ? ? 1_555 F DT 12 N3 ? ? E DA 3 F DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DA 3 N6 ? ? ? 1_555 F DT 12 O4 ? ? E DA 3 F DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DC 4 N3 ? ? ? 1_555 F DG 11 N1 ? ? E DC 4 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DC 4 N4 ? ? ? 1_555 F DG 11 O6 ? ? E DC 4 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DC 4 O2 ? ? ? 1_555 F DG 11 N2 ? ? E DC 4 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DT 5 N3 ? ? ? 1_555 F DA 10 N1 ? ? E DT 5 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DT 5 O4 ? ? ? 1_555 F DA 10 N6 ? ? E DT 5 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DA 6 N1 ? ? ? 1_555 F DT 9 N3 ? ? E DA 6 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DA 6 N6 ? ? ? 1_555 F DT 9 O4 ? ? E DA 6 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DA 7 N1 ? ? ? 1_555 F DT 8 N3 ? ? E DA 7 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DA 7 N6 ? ? ? 1_555 F DT 8 O4 ? ? E DA 7 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DT 8 N3 ? ? ? 1_555 F DA 7 N1 ? ? E DT 8 F DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DT 8 O4 ? ? ? 1_555 F DA 7 N6 ? ? E DT 8 F DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DT 9 N3 ? ? ? 1_555 F DA 6 N1 ? ? E DT 9 F DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DT 9 O4 ? ? ? 1_555 F DA 6 N6 ? ? E DT 9 F DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DA 10 N1 ? ? ? 1_555 F DT 5 N3 ? ? E DA 10 F DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DA 10 N6 ? ? ? 1_555 F DT 5 O4 ? ? E DA 10 F DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E DG 11 N1 ? ? ? 1_555 F DC 4 N3 ? ? E DG 11 F DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E DG 11 N2 ? ? ? 1_555 F DC 4 O2 ? ? E DG 11 F DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DG 11 O6 ? ? ? 1_555 F DC 4 N4 ? ? E DG 11 F DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DT 12 N3 ? ? ? 1_555 F DA 3 N1 ? ? E DT 12 F DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DT 12 O4 ? ? ? 1_555 F DA 3 N6 ? ? E DT 12 F DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DC 13 N3 ? ? ? 1_555 F DG 2 N1 ? ? E DC 13 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DC 13 N4 ? ? ? 1_555 F DG 2 O6 ? ? E DC 13 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DC 13 O2 ? ? ? 1_555 F DG 2 N2 ? ? E DC 13 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DG 14 N1 ? ? ? 1_555 F DC 1 N3 ? ? E DG 14 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DG 14 N2 ? ? ? 1_555 F DC 1 O2 ? ? E DG 14 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DG 14 O6 ? ? ? 1_555 F DC 1 N4 ? ? E DG 14 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 4RDU _atom_sites.fract_transf_matrix[1][1] 0.029255 _atom_sites.fract_transf_matrix[1][2] -0.012341 _atom_sites.fract_transf_matrix[1][3] -0.006344 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025291 _atom_sites.fract_transf_matrix[2][3] -0.000479 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018272 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 HIS 2 135 ? ? ? A . n A 1 3 MET 3 136 ? ? ? A . n A 1 4 VAL 4 137 ? ? ? A . n A 1 5 ARG 5 138 138 ARG ARG A . n A 1 6 LYS 6 139 139 LYS LYS A . n A 1 7 PRO 7 140 140 PRO PRO A . n A 1 8 ARG 8 141 141 ARG ARG A . n A 1 9 THR 9 142 142 THR THR A . n A 1 10 ILE 10 143 143 ILE ILE A . n A 1 11 TYR 11 144 144 TYR TYR A . n A 1 12 SER 12 145 145 SER SER A . n A 1 13 SER 13 146 146 SER SER A . n A 1 14 PHE 14 147 147 PHE PHE A . n A 1 15 GLN 15 148 148 GLN GLN A . n A 1 16 LEU 16 149 149 LEU LEU A . n A 1 17 ALA 17 150 150 ALA ALA A . n A 1 18 ALA 18 151 151 ALA ALA A . n A 1 19 LEU 19 152 152 LEU LEU A . n A 1 20 GLN 20 153 153 GLN GLN A . n A 1 21 ARG 21 154 154 ARG ARG A . n A 1 22 ARG 22 155 155 ARG ARG A . n A 1 23 PHE 23 156 156 PHE PHE A . n A 1 24 GLN 24 157 157 GLN GLN A . n A 1 25 LYS 25 158 158 LYS LYS A . n A 1 26 THR 26 159 159 THR THR A . n A 1 27 GLN 27 160 160 GLN GLN A . n A 1 28 TYR 28 161 161 TYR TYR A . n A 1 29 LEU 29 162 162 LEU LEU A . n A 1 30 ALA 30 163 163 ALA ALA A . n A 1 31 LEU 31 164 164 LEU LEU A . n A 1 32 PRO 32 165 165 PRO PRO A . n A 1 33 GLU 33 166 166 GLU GLU A . n A 1 34 ARG 34 167 167 ARG ARG A . n A 1 35 ALA 35 168 168 ALA ALA A . n A 1 36 GLU 36 169 169 GLU GLU A . n A 1 37 LEU 37 170 170 LEU LEU A . n A 1 38 ALA 38 171 171 ALA ALA A . n A 1 39 ALA 39 172 172 ALA ALA A . n A 1 40 SER 40 173 173 SER SER A . n A 1 41 LEU 41 174 174 LEU LEU A . n A 1 42 GLY 42 175 175 GLY GLY A . n A 1 43 LEU 43 176 176 LEU LEU A . n A 1 44 THR 44 177 177 THR THR A . n A 1 45 GLN 45 178 178 GLN GLN A . n A 1 46 THR 46 179 179 THR THR A . n A 1 47 GLN 47 180 180 GLN GLN A . n A 1 48 VAL 48 181 181 VAL VAL A . n A 1 49 LYS 49 182 182 LYS LYS A . n A 1 50 ILE 50 183 183 ILE ILE A . n A 1 51 TRP 51 184 184 TRP TRP A . n A 1 52 PHE 52 185 185 PHE PHE A . n A 1 53 GLN 53 186 186 GLN GLN A . n A 1 54 ASN 54 187 187 ASN ASN A . n A 1 55 LYS 55 188 188 LYS LYS A . n A 1 56 ARG 56 189 189 ARG ARG A . n A 1 57 SER 57 190 190 SER SER A . n A 1 58 LYS 58 191 191 LYS LYS A . n A 1 59 ILE 59 192 192 ILE ILE A . n A 1 60 LYS 60 193 193 LYS LYS A . n A 1 61 LYS 61 194 194 LYS LYS A . n A 1 62 ILE 62 195 195 ILE ILE A . n A 1 63 MET 63 196 196 MET MET A . n A 1 64 LYS 64 197 197 LYS LYS A . n A 1 65 ASN 65 198 198 ASN ASN A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DC 4 4 4 DC DC B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DA 10 10 10 DA DA B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DT 12 12 12 DT DT B . n B 2 13 DC 13 13 13 DC DC B . n B 2 14 DG 14 14 14 DG DG B . n C 2 1 DC 1 1 1 DC DC C . n C 2 2 DG 2 2 2 DG DG C . n C 2 3 DA 3 3 3 DA DA C . n C 2 4 DC 4 4 4 DC DC C . n C 2 5 DT 5 5 5 DT DT C . n C 2 6 DA 6 6 6 DA DA C . n C 2 7 DA 7 7 7 DA DA C . n C 2 8 DT 8 8 8 DT DT C . n C 2 9 DT 9 9 9 DT DT C . n C 2 10 DA 10 10 10 DA DA C . n C 2 11 DG 11 11 11 DG DG C . n C 2 12 DT 12 12 12 DT DT C . n C 2 13 DC 13 13 13 DC DC C . n C 2 14 DG 14 14 14 DG DG C . n D 1 1 GLY 1 0 ? ? ? D . n D 1 2 HIS 2 135 ? ? ? D . n D 1 3 MET 3 136 ? ? ? D . n D 1 4 VAL 4 137 137 VAL VAL D . n D 1 5 ARG 5 138 138 ARG ARG D . n D 1 6 LYS 6 139 139 LYS LYS D . n D 1 7 PRO 7 140 140 PRO PRO D . n D 1 8 ARG 8 141 141 ARG ARG D . n D 1 9 THR 9 142 142 THR THR D . n D 1 10 ILE 10 143 143 ILE ILE D . n D 1 11 TYR 11 144 144 TYR TYR D . n D 1 12 SER 12 145 145 SER SER D . n D 1 13 SER 13 146 146 SER SER D . n D 1 14 PHE 14 147 147 PHE PHE D . n D 1 15 GLN 15 148 148 GLN GLN D . n D 1 16 LEU 16 149 149 LEU LEU D . n D 1 17 ALA 17 150 150 ALA ALA D . n D 1 18 ALA 18 151 151 ALA ALA D . n D 1 19 LEU 19 152 152 LEU LEU D . n D 1 20 GLN 20 153 153 GLN GLN D . n D 1 21 ARG 21 154 154 ARG ARG D . n D 1 22 ARG 22 155 155 ARG ARG D . n D 1 23 PHE 23 156 156 PHE PHE D . n D 1 24 GLN 24 157 157 GLN GLN D . n D 1 25 LYS 25 158 158 LYS LYS D . n D 1 26 THR 26 159 159 THR THR D . n D 1 27 GLN 27 160 160 GLN GLN D . n D 1 28 TYR 28 161 161 TYR TYR D . n D 1 29 LEU 29 162 162 LEU LEU D . n D 1 30 ALA 30 163 163 ALA ALA D . n D 1 31 LEU 31 164 164 LEU LEU D . n D 1 32 PRO 32 165 165 PRO PRO D . n D 1 33 GLU 33 166 166 GLU GLU D . n D 1 34 ARG 34 167 167 ARG ARG D . n D 1 35 ALA 35 168 168 ALA ALA D . n D 1 36 GLU 36 169 169 GLU GLU D . n D 1 37 LEU 37 170 170 LEU LEU D . n D 1 38 ALA 38 171 171 ALA ALA D . n D 1 39 ALA 39 172 172 ALA ALA D . n D 1 40 SER 40 173 173 SER SER D . n D 1 41 LEU 41 174 174 LEU LEU D . n D 1 42 GLY 42 175 175 GLY GLY D . n D 1 43 LEU 43 176 176 LEU LEU D . n D 1 44 THR 44 177 177 THR THR D . n D 1 45 GLN 45 178 178 GLN GLN D . n D 1 46 THR 46 179 179 THR THR D . n D 1 47 GLN 47 180 180 GLN GLN D . n D 1 48 VAL 48 181 181 VAL VAL D . n D 1 49 LYS 49 182 182 LYS LYS D . n D 1 50 ILE 50 183 183 ILE ILE D . n D 1 51 TRP 51 184 184 TRP TRP D . n D 1 52 PHE 52 185 185 PHE PHE D . n D 1 53 GLN 53 186 186 GLN GLN D . n D 1 54 ASN 54 187 187 ASN ASN D . n D 1 55 LYS 55 188 188 LYS LYS D . n D 1 56 ARG 56 189 189 ARG ARG D . n D 1 57 SER 57 190 190 SER SER D . n D 1 58 LYS 58 191 191 LYS LYS D . n D 1 59 ILE 59 192 192 ILE ILE D . n D 1 60 LYS 60 193 193 LYS LYS D . n D 1 61 LYS 61 194 194 LYS LYS D . n D 1 62 ILE 62 195 195 ILE ILE D . n D 1 63 MET 63 196 196 MET MET D . n D 1 64 LYS 64 197 197 LYS LYS D . n D 1 65 ASN 65 198 198 ASN ASN D . n E 2 1 DC 1 1 1 DC DC E . n E 2 2 DG 2 2 2 DG DG E . n E 2 3 DA 3 3 3 DA DA E . n E 2 4 DC 4 4 4 DC DC E . n E 2 5 DT 5 5 5 DT DT E . n E 2 6 DA 6 6 6 DA DA E . n E 2 7 DA 7 7 7 DA DA E . n E 2 8 DT 8 8 8 DT DT E . n E 2 9 DT 9 9 9 DT DT E . n E 2 10 DA 10 10 10 DA DA E . n E 2 11 DG 11 11 11 DG DG E . n E 2 12 DT 12 12 12 DT DT E . n E 2 13 DC 13 13 13 DC DC E . n E 2 14 DG 14 14 14 DG DG E . n F 2 1 DC 1 1 1 DC DC F . n F 2 2 DG 2 2 2 DG DG F . n F 2 3 DA 3 3 3 DA DA F . n F 2 4 DC 4 4 4 DC DC F . n F 2 5 DT 5 5 5 DT DT F . n F 2 6 DA 6 6 6 DA DA F . n F 2 7 DA 7 7 7 DA DA F . n F 2 8 DT 8 8 8 DT DT F . n F 2 9 DT 9 9 9 DT DT F . n F 2 10 DA 10 10 10 DA DA F . n F 2 11 DG 11 11 11 DG DG F . n F 2 12 DT 12 12 12 DT DT F . n F 2 13 DC 13 13 13 DC DC F . n F 2 14 DG 14 14 ? ? ? F . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for Stem Cell Biology' 2 STEMCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 HOH 1 201 205 HOH HOH A . G 3 HOH 2 202 211 HOH HOH A . G 3 HOH 3 203 215 HOH HOH A . G 3 HOH 4 204 219 HOH HOH A . G 3 HOH 5 205 222 HOH HOH A . G 3 HOH 6 206 228 HOH HOH A . G 3 HOH 7 207 231 HOH HOH A . G 3 HOH 8 208 239 HOH HOH A . G 3 HOH 9 209 240 HOH HOH A . G 3 HOH 10 210 241 HOH HOH A . G 3 HOH 11 211 244 HOH HOH A . G 3 HOH 12 212 246 HOH HOH A . G 3 HOH 13 213 247 HOH HOH A . G 3 HOH 14 214 249 HOH HOH A . G 3 HOH 15 215 252 HOH HOH A . G 3 HOH 16 216 253 HOH HOH A . G 3 HOH 17 217 255 HOH HOH A . G 3 HOH 18 218 257 HOH HOH A . G 3 HOH 19 219 271 HOH HOH A . G 3 HOH 20 220 273 HOH HOH A . G 3 HOH 21 221 281 HOH HOH A . G 3 HOH 22 222 284 HOH HOH A . G 3 HOH 23 223 286 HOH HOH A . G 3 HOH 24 224 287 HOH HOH A . G 3 HOH 25 225 288 HOH HOH A . G 3 HOH 26 226 296 HOH HOH A . G 3 HOH 27 227 297 HOH HOH A . G 3 HOH 28 228 299 HOH HOH A . G 3 HOH 29 229 301 HOH HOH A . G 3 HOH 30 230 303 HOH HOH A . G 3 HOH 31 231 305 HOH HOH A . G 3 HOH 32 232 310 HOH HOH A . G 3 HOH 33 233 312 HOH HOH A . G 3 HOH 34 234 313 HOH HOH A . G 3 HOH 35 235 316 HOH HOH A . G 3 HOH 36 236 320 HOH HOH A . G 3 HOH 37 237 321 HOH HOH A . G 3 HOH 38 238 323 HOH HOH A . G 3 HOH 39 239 324 HOH HOH A . G 3 HOH 40 240 325 HOH HOH A . G 3 HOH 41 241 326 HOH HOH A . G 3 HOH 42 242 327 HOH HOH A . G 3 HOH 43 243 328 HOH HOH A . G 3 HOH 44 244 329 HOH HOH A . G 3 HOH 45 245 330 HOH HOH A . G 3 HOH 46 246 331 HOH HOH A . G 3 HOH 47 247 332 HOH HOH A . G 3 HOH 48 248 333 HOH HOH A . G 3 HOH 49 249 334 HOH HOH A . G 3 HOH 50 250 335 HOH HOH A . G 3 HOH 51 251 336 HOH HOH A . G 3 HOH 52 252 337 HOH HOH A . G 3 HOH 53 253 342 HOH HOH A . G 3 HOH 54 254 343 HOH HOH A . G 3 HOH 55 255 344 HOH HOH A . G 3 HOH 56 256 346 HOH HOH A . G 3 HOH 57 257 347 HOH HOH A . G 3 HOH 58 258 348 HOH HOH A . G 3 HOH 59 259 349 HOH HOH A . G 3 HOH 60 260 350 HOH HOH A . G 3 HOH 61 261 351 HOH HOH A . G 3 HOH 62 262 353 HOH HOH A . G 3 HOH 63 263 355 HOH HOH A . G 3 HOH 64 264 356 HOH HOH A . G 3 HOH 65 265 359 HOH HOH A . G 3 HOH 66 266 360 HOH HOH A . G 3 HOH 67 267 362 HOH HOH A . G 3 HOH 68 268 367 HOH HOH A . G 3 HOH 69 269 370 HOH HOH A . G 3 HOH 70 270 372 HOH HOH A . G 3 HOH 71 271 376 HOH HOH A . G 3 HOH 72 272 378 HOH HOH A . G 3 HOH 73 273 379 HOH HOH A . G 3 HOH 74 274 383 HOH HOH A . G 3 HOH 75 275 384 HOH HOH A . G 3 HOH 76 276 385 HOH HOH A . G 3 HOH 77 277 386 HOH HOH A . G 3 HOH 78 278 387 HOH HOH A . G 3 HOH 79 279 388 HOH HOH A . G 3 HOH 80 280 389 HOH HOH A . G 3 HOH 81 281 390 HOH HOH A . G 3 HOH 82 282 396 HOH HOH A . G 3 HOH 83 283 397 HOH HOH A . G 3 HOH 84 284 404 HOH HOH A . G 3 HOH 85 285 405 HOH HOH A . G 3 HOH 86 286 406 HOH HOH A . G 3 HOH 87 287 407 HOH HOH A . G 3 HOH 88 288 408 HOH HOH A . G 3 HOH 89 289 409 HOH HOH A . G 3 HOH 90 290 410 HOH HOH A . G 3 HOH 91 291 412 HOH HOH A . G 3 HOH 92 292 413 HOH HOH A . G 3 HOH 93 293 415 HOH HOH A . G 3 HOH 94 294 417 HOH HOH A . G 3 HOH 95 295 425 HOH HOH A . G 3 HOH 96 296 428 HOH HOH A . G 3 HOH 97 297 429 HOH HOH A . G 3 HOH 98 298 430 HOH HOH A . G 3 HOH 99 299 212 HOH HOH A . G 3 HOH 100 300 216 HOH HOH A . G 3 HOH 101 301 214 HOH HOH A . H 3 HOH 1 101 203 HOH HOH B . H 3 HOH 2 102 204 HOH HOH B . H 3 HOH 3 103 208 HOH HOH B . H 3 HOH 4 104 217 HOH HOH B . H 3 HOH 5 105 225 HOH HOH B . H 3 HOH 6 106 227 HOH HOH B . H 3 HOH 7 107 229 HOH HOH B . H 3 HOH 8 108 232 HOH HOH B . H 3 HOH 9 109 234 HOH HOH B . H 3 HOH 10 110 242 HOH HOH B . H 3 HOH 11 111 258 HOH HOH B . H 3 HOH 12 112 266 HOH HOH B . H 3 HOH 13 113 280 HOH HOH B . H 3 HOH 14 114 298 HOH HOH B . H 3 HOH 15 115 307 HOH HOH B . H 3 HOH 16 116 314 HOH HOH B . H 3 HOH 17 117 357 HOH HOH B . H 3 HOH 18 118 358 HOH HOH B . H 3 HOH 19 119 363 HOH HOH B . H 3 HOH 20 120 368 HOH HOH B . H 3 HOH 21 121 369 HOH HOH B . H 3 HOH 22 122 391 HOH HOH B . H 3 HOH 23 123 392 HOH HOH B . H 3 HOH 24 124 393 HOH HOH B . H 3 HOH 25 125 394 HOH HOH B . H 3 HOH 26 126 395 HOH HOH B . H 3 HOH 27 127 402 HOH HOH B . H 3 HOH 28 128 411 HOH HOH B . H 3 HOH 29 129 419 HOH HOH B . H 3 HOH 30 130 420 HOH HOH B . H 3 HOH 31 131 421 HOH HOH B . H 3 HOH 32 132 422 HOH HOH B . H 3 HOH 33 133 423 HOH HOH B . H 3 HOH 34 134 424 HOH HOH B . H 3 HOH 35 135 426 HOH HOH B . I 3 HOH 1 101 199 HOH HOH C . I 3 HOH 2 102 201 HOH HOH C . I 3 HOH 3 103 206 HOH HOH C . I 3 HOH 4 104 209 HOH HOH C . I 3 HOH 5 105 210 HOH HOH C . I 3 HOH 6 106 218 HOH HOH C . I 3 HOH 7 107 226 HOH HOH C . I 3 HOH 8 108 243 HOH HOH C . I 3 HOH 9 109 254 HOH HOH C . I 3 HOH 10 110 260 HOH HOH C . I 3 HOH 11 111 261 HOH HOH C . I 3 HOH 12 112 264 HOH HOH C . I 3 HOH 13 113 265 HOH HOH C . I 3 HOH 14 114 269 HOH HOH C . I 3 HOH 15 115 270 HOH HOH C . I 3 HOH 16 116 291 HOH HOH C . I 3 HOH 17 117 294 HOH HOH C . I 3 HOH 18 118 302 HOH HOH C . I 3 HOH 19 119 306 HOH HOH C . I 3 HOH 20 120 315 HOH HOH C . I 3 HOH 21 121 361 HOH HOH C . I 3 HOH 22 122 373 HOH HOH C . I 3 HOH 23 123 374 HOH HOH C . I 3 HOH 24 124 377 HOH HOH C . I 3 HOH 25 125 382 HOH HOH C . I 3 HOH 26 126 403 HOH HOH C . I 3 HOH 27 127 416 HOH HOH C . I 3 HOH 28 128 431 HOH HOH C . J 3 HOH 1 201 202 HOH HOH D . J 3 HOH 2 202 221 HOH HOH D . J 3 HOH 3 203 223 HOH HOH D . J 3 HOH 4 204 230 HOH HOH D . J 3 HOH 5 205 233 HOH HOH D . J 3 HOH 6 206 235 HOH HOH D . J 3 HOH 7 207 238 HOH HOH D . J 3 HOH 8 208 245 HOH HOH D . J 3 HOH 9 209 248 HOH HOH D . J 3 HOH 10 210 251 HOH HOH D . J 3 HOH 11 211 256 HOH HOH D . J 3 HOH 12 212 259 HOH HOH D . J 3 HOH 13 213 262 HOH HOH D . J 3 HOH 14 214 268 HOH HOH D . J 3 HOH 15 215 272 HOH HOH D . J 3 HOH 16 216 274 HOH HOH D . J 3 HOH 17 217 275 HOH HOH D . J 3 HOH 18 218 276 HOH HOH D . J 3 HOH 19 219 277 HOH HOH D . J 3 HOH 20 220 278 HOH HOH D . J 3 HOH 21 221 282 HOH HOH D . J 3 HOH 22 222 283 HOH HOH D . J 3 HOH 23 223 289 HOH HOH D . J 3 HOH 24 224 292 HOH HOH D . J 3 HOH 25 225 293 HOH HOH D . J 3 HOH 26 226 295 HOH HOH D . J 3 HOH 27 227 300 HOH HOH D . J 3 HOH 28 228 304 HOH HOH D . J 3 HOH 29 229 308 HOH HOH D . J 3 HOH 30 230 318 HOH HOH D . J 3 HOH 31 231 338 HOH HOH D . J 3 HOH 32 232 345 HOH HOH D . J 3 HOH 33 233 352 HOH HOH D . J 3 HOH 34 234 354 HOH HOH D . J 3 HOH 35 235 364 HOH HOH D . J 3 HOH 36 236 365 HOH HOH D . J 3 HOH 37 237 375 HOH HOH D . J 3 HOH 38 238 380 HOH HOH D . J 3 HOH 39 239 381 HOH HOH D . J 3 HOH 40 240 398 HOH HOH D . J 3 HOH 41 241 399 HOH HOH D . J 3 HOH 42 242 401 HOH HOH D . J 3 HOH 43 243 414 HOH HOH D . J 3 HOH 44 244 418 HOH HOH D . K 3 HOH 1 101 250 HOH HOH E . K 3 HOH 2 102 267 HOH HOH E . K 3 HOH 3 103 279 HOH HOH E . K 3 HOH 4 104 290 HOH HOH E . K 3 HOH 5 105 309 HOH HOH E . K 3 HOH 6 106 319 HOH HOH E . K 3 HOH 7 107 366 HOH HOH E . K 3 HOH 8 108 371 HOH HOH E . K 3 HOH 9 109 400 HOH HOH E . L 3 HOH 1 101 200 HOH HOH F . L 3 HOH 2 102 207 HOH HOH F . L 3 HOH 3 103 213 HOH HOH F . L 3 HOH 4 104 220 HOH HOH F . L 3 HOH 5 105 224 HOH HOH F . L 3 HOH 6 106 236 HOH HOH F . L 3 HOH 7 107 237 HOH HOH F . L 3 HOH 8 108 263 HOH HOH F . L 3 HOH 9 109 285 HOH HOH F . L 3 HOH 10 110 311 HOH HOH F . L 3 HOH 11 111 317 HOH HOH F . L 3 HOH 12 112 322 HOH HOH F . L 3 HOH 13 113 339 HOH HOH F . L 3 HOH 14 114 340 HOH HOH F . L 3 HOH 15 115 341 HOH HOH F . L 3 HOH 16 116 427 HOH HOH F . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,G,H,I 2 1 D,E,F,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3310 ? 1 MORE -17 ? 1 'SSA (A^2)' 8020 ? 2 'ABSA (A^2)' 3100 ? 2 MORE -16 ? 2 'SSA (A^2)' 8010 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-19 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2023-02-01 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 2 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_entity_src_syn 2 2 'Structure model' software 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' pdbx_initial_refinement_model 8 4 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 7 4 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 8 4 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 9 4 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 10 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 11 4 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 12 4 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 13 4 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 43.5709 18.6864 64.8952 0.0661 0.2269 0.0670 0.0266 -0.0565 -0.0080 2.2604 1.7535 1.5004 -0.2119 -0.3260 -0.1581 -0.0456 0.0240 0.0215 -0.0001 0.1175 0.0004 0.1013 -0.1491 0.0356 'X-RAY DIFFRACTION' 2 ? refined 47.0531 18.3199 53.3141 0.1109 0.3359 0.1155 0.0242 -0.0739 -0.0032 1.4100 6.7192 3.1087 0.4243 -0.9798 -1.0038 -0.0893 0.0728 0.0164 0.0722 0.0750 0.0460 -0.4759 0.0542 -0.0889 'X-RAY DIFFRACTION' 3 ? refined 48.6210 16.1753 52.5788 0.0888 0.3008 0.0782 0.0292 -0.0227 0.0221 2.4302 7.8270 3.6764 0.4885 -0.0219 1.2875 -0.0845 0.0446 0.0399 0.1058 -0.1050 -0.4550 -0.3058 0.1033 0.1779 'X-RAY DIFFRACTION' 4 ? refined 45.0864 1.1239 76.8714 0.1259 0.2034 0.0413 0.0372 -0.0672 -0.0046 2.5654 2.8222 2.7639 0.1825 0.1324 0.2273 0.0777 -0.0356 -0.0421 -0.0157 -0.0653 -0.0668 0.2301 0.2059 0.0216 'X-RAY DIFFRACTION' 5 ? refined 40.1001 3.2042 88.1196 0.2473 0.1712 0.0198 -0.0043 0.0050 -0.0164 5.5024 8.7214 3.0855 2.9492 0.0154 0.2655 0.2491 -0.2764 0.0273 -0.1552 -0.2222 0.1367 0.7125 0.4237 -0.2555 'X-RAY DIFFRACTION' 6 ? refined 38.4843 5.0608 89.0283 0.2296 0.2456 0.0974 -0.0046 0.0095 -0.0303 3.6647 5.0134 3.2435 0.5540 0.2111 -0.0515 0.1789 -0.2378 0.0589 -0.3262 0.0116 0.5197 0.7119 0.1669 -0.2804 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 138 A 198 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 1 B 14 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 1 C 14 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 D 137 D 198 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 E 1 E 14 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 F 1 F 13 ? . . . . ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 PHASER 2.3.0 ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 5 REFMAC 5.7.0029 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # _pdbx_entry_details.entry_id 4RDU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (135-198) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. IN THE CONSTRUCT LYS 135 WAS MUTATED TO HIS AND LYS 136 WAS MUTATED TO MET. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 271 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 113 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 189 ? ? CZ A ARG 189 ? ? NH2 A ARG 189 ? ? 116.95 120.30 -3.35 0.50 N 2 1 "C5'" C DC 1 ? ? "C4'" C DC 1 ? ? "C3'" C DC 1 ? ? 123.25 115.70 7.55 1.20 N 3 1 "C5'" C DC 1 ? ? "C4'" C DC 1 ? ? "O4'" C DC 1 ? ? 119.53 109.80 9.73 1.10 N 4 1 NE D ARG 154 ? ? CZ D ARG 154 ? ? NH1 D ARG 154 ? ? 123.38 120.30 3.08 0.50 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 154 ? CD ? A ARG 21 CD 2 1 Y 1 A ARG 154 ? NE ? A ARG 21 NE 3 1 Y 1 A ARG 154 ? CZ ? A ARG 21 CZ 4 1 Y 1 A ARG 154 ? NH1 ? A ARG 21 NH1 5 1 Y 1 A ARG 154 ? NH2 ? A ARG 21 NH2 6 1 Y 1 A LYS 193 ? CE ? A LYS 60 CE 7 1 Y 1 A LYS 193 ? NZ ? A LYS 60 NZ 8 1 Y 1 D VAL 137 ? CG1 ? D VAL 4 CG1 9 1 Y 1 D VAL 137 ? CG2 ? D VAL 4 CG2 10 1 Y 1 D LYS 193 ? CD ? D LYS 60 CD 11 1 Y 1 D LYS 193 ? CE ? D LYS 60 CE 12 1 Y 1 D LYS 193 ? NZ ? D LYS 60 NZ 13 1 Y 1 D LYS 197 ? CG ? D LYS 64 CG 14 1 Y 1 D LYS 197 ? CD ? D LYS 64 CD 15 1 Y 1 D LYS 197 ? CE ? D LYS 64 CE 16 1 Y 1 D LYS 197 ? NZ ? D LYS 64 NZ 17 1 Y 1 D ASN 198 ? CG ? D ASN 65 CG 18 1 Y 1 D ASN 198 ? OD1 ? D ASN 65 OD1 19 1 Y 1 D ASN 198 ? ND2 ? D ASN 65 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A HIS 135 ? A HIS 2 3 1 Y 1 A MET 136 ? A MET 3 4 1 Y 1 A VAL 137 ? A VAL 4 5 1 Y 1 D GLY 0 ? D GLY 1 6 1 Y 1 D HIS 135 ? D HIS 2 7 1 Y 1 D MET 136 ? D MET 3 8 1 Y 1 F DG 14 ? F DG 14 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 DA OP3 O N N 58 DA P P N N 59 DA OP1 O N N 60 DA OP2 O N N 61 DA "O5'" O N N 62 DA "C5'" C N N 63 DA "C4'" C N R 64 DA "O4'" O N N 65 DA "C3'" C N S 66 DA "O3'" O N N 67 DA "C2'" C N N 68 DA "C1'" C N R 69 DA N9 N Y N 70 DA C8 C Y N 71 DA N7 N Y N 72 DA C5 C Y N 73 DA C6 C Y N 74 DA N6 N N N 75 DA N1 N Y N 76 DA C2 C Y N 77 DA N3 N Y N 78 DA C4 C Y N 79 DA HOP3 H N N 80 DA HOP2 H N N 81 DA "H5'" H N N 82 DA "H5''" H N N 83 DA "H4'" H N N 84 DA "H3'" H N N 85 DA "HO3'" H N N 86 DA "H2'" H N N 87 DA "H2''" H N N 88 DA "H1'" H N N 89 DA H8 H N N 90 DA H61 H N N 91 DA H62 H N N 92 DA H2 H N N 93 DC OP3 O N N 94 DC P P N N 95 DC OP1 O N N 96 DC OP2 O N N 97 DC "O5'" O N N 98 DC "C5'" C N N 99 DC "C4'" C N R 100 DC "O4'" O N N 101 DC "C3'" C N S 102 DC "O3'" O N N 103 DC "C2'" C N N 104 DC "C1'" C N R 105 DC N1 N N N 106 DC C2 C N N 107 DC O2 O N N 108 DC N3 N N N 109 DC C4 C N N 110 DC N4 N N N 111 DC C5 C N N 112 DC C6 C N N 113 DC HOP3 H N N 114 DC HOP2 H N N 115 DC "H5'" H N N 116 DC "H5''" H N N 117 DC "H4'" H N N 118 DC "H3'" H N N 119 DC "HO3'" H N N 120 DC "H2'" H N N 121 DC "H2''" H N N 122 DC "H1'" H N N 123 DC H41 H N N 124 DC H42 H N N 125 DC H5 H N N 126 DC H6 H N N 127 DG OP3 O N N 128 DG P P N N 129 DG OP1 O N N 130 DG OP2 O N N 131 DG "O5'" O N N 132 DG "C5'" C N N 133 DG "C4'" C N R 134 DG "O4'" O N N 135 DG "C3'" C N S 136 DG "O3'" O N N 137 DG "C2'" C N N 138 DG "C1'" C N R 139 DG N9 N Y N 140 DG C8 C Y N 141 DG N7 N Y N 142 DG C5 C Y N 143 DG C6 C N N 144 DG O6 O N N 145 DG N1 N N N 146 DG C2 C N N 147 DG N2 N N N 148 DG N3 N N N 149 DG C4 C Y N 150 DG HOP3 H N N 151 DG HOP2 H N N 152 DG "H5'" H N N 153 DG "H5''" H N N 154 DG "H4'" H N N 155 DG "H3'" H N N 156 DG "HO3'" H N N 157 DG "H2'" H N N 158 DG "H2''" H N N 159 DG "H1'" H N N 160 DG H8 H N N 161 DG H1 H N N 162 DG H21 H N N 163 DG H22 H N N 164 DT OP3 O N N 165 DT P P N N 166 DT OP1 O N N 167 DT OP2 O N N 168 DT "O5'" O N N 169 DT "C5'" C N N 170 DT "C4'" C N R 171 DT "O4'" O N N 172 DT "C3'" C N S 173 DT "O3'" O N N 174 DT "C2'" C N N 175 DT "C1'" C N R 176 DT N1 N N N 177 DT C2 C N N 178 DT O2 O N N 179 DT N3 N N N 180 DT C4 C N N 181 DT O4 O N N 182 DT C5 C N N 183 DT C7 C N N 184 DT C6 C N N 185 DT HOP3 H N N 186 DT HOP2 H N N 187 DT "H5'" H N N 188 DT "H5''" H N N 189 DT "H4'" H N N 190 DT "H3'" H N N 191 DT "HO3'" H N N 192 DT "H2'" H N N 193 DT "H2''" H N N 194 DT "H1'" H N N 195 DT H3 H N N 196 DT H71 H N N 197 DT H72 H N N 198 DT H73 H N N 199 DT H6 H N N 200 GLN N N N N 201 GLN CA C N S 202 GLN C C N N 203 GLN O O N N 204 GLN CB C N N 205 GLN CG C N N 206 GLN CD C N N 207 GLN OE1 O N N 208 GLN NE2 N N N 209 GLN OXT O N N 210 GLN H H N N 211 GLN H2 H N N 212 GLN HA H N N 213 GLN HB2 H N N 214 GLN HB3 H N N 215 GLN HG2 H N N 216 GLN HG3 H N N 217 GLN HE21 H N N 218 GLN HE22 H N N 219 GLN HXT H N N 220 GLU N N N N 221 GLU CA C N S 222 GLU C C N N 223 GLU O O N N 224 GLU CB C N N 225 GLU CG C N N 226 GLU CD C N N 227 GLU OE1 O N N 228 GLU OE2 O N N 229 GLU OXT O N N 230 GLU H H N N 231 GLU H2 H N N 232 GLU HA H N N 233 GLU HB2 H N N 234 GLU HB3 H N N 235 GLU HG2 H N N 236 GLU HG3 H N N 237 GLU HE2 H N N 238 GLU HXT H N N 239 GLY N N N N 240 GLY CA C N N 241 GLY C C N N 242 GLY O O N N 243 GLY OXT O N N 244 GLY H H N N 245 GLY H2 H N N 246 GLY HA2 H N N 247 GLY HA3 H N N 248 GLY HXT H N N 249 HIS N N N N 250 HIS CA C N S 251 HIS C C N N 252 HIS O O N N 253 HIS CB C N N 254 HIS CG C Y N 255 HIS ND1 N Y N 256 HIS CD2 C Y N 257 HIS CE1 C Y N 258 HIS NE2 N Y N 259 HIS OXT O N N 260 HIS H H N N 261 HIS H2 H N N 262 HIS HA H N N 263 HIS HB2 H N N 264 HIS HB3 H N N 265 HIS HD1 H N N 266 HIS HD2 H N N 267 HIS HE1 H N N 268 HIS HE2 H N N 269 HIS HXT H N N 270 HOH O O N N 271 HOH H1 H N N 272 HOH H2 H N N 273 ILE N N N N 274 ILE CA C N S 275 ILE C C N N 276 ILE O O N N 277 ILE CB C N S 278 ILE CG1 C N N 279 ILE CG2 C N N 280 ILE CD1 C N N 281 ILE OXT O N N 282 ILE H H N N 283 ILE H2 H N N 284 ILE HA H N N 285 ILE HB H N N 286 ILE HG12 H N N 287 ILE HG13 H N N 288 ILE HG21 H N N 289 ILE HG22 H N N 290 ILE HG23 H N N 291 ILE HD11 H N N 292 ILE HD12 H N N 293 ILE HD13 H N N 294 ILE HXT H N N 295 LEU N N N N 296 LEU CA C N S 297 LEU C C N N 298 LEU O O N N 299 LEU CB C N N 300 LEU CG C N N 301 LEU CD1 C N N 302 LEU CD2 C N N 303 LEU OXT O N N 304 LEU H H N N 305 LEU H2 H N N 306 LEU HA H N N 307 LEU HB2 H N N 308 LEU HB3 H N N 309 LEU HG H N N 310 LEU HD11 H N N 311 LEU HD12 H N N 312 LEU HD13 H N N 313 LEU HD21 H N N 314 LEU HD22 H N N 315 LEU HD23 H N N 316 LEU HXT H N N 317 LYS N N N N 318 LYS CA C N S 319 LYS C C N N 320 LYS O O N N 321 LYS CB C N N 322 LYS CG C N N 323 LYS CD C N N 324 LYS CE C N N 325 LYS NZ N N N 326 LYS OXT O N N 327 LYS H H N N 328 LYS H2 H N N 329 LYS HA H N N 330 LYS HB2 H N N 331 LYS HB3 H N N 332 LYS HG2 H N N 333 LYS HG3 H N N 334 LYS HD2 H N N 335 LYS HD3 H N N 336 LYS HE2 H N N 337 LYS HE3 H N N 338 LYS HZ1 H N N 339 LYS HZ2 H N N 340 LYS HZ3 H N N 341 LYS HXT H N N 342 MET N N N N 343 MET CA C N S 344 MET C C N N 345 MET O O N N 346 MET CB C N N 347 MET CG C N N 348 MET SD S N N 349 MET CE C N N 350 MET OXT O N N 351 MET H H N N 352 MET H2 H N N 353 MET HA H N N 354 MET HB2 H N N 355 MET HB3 H N N 356 MET HG2 H N N 357 MET HG3 H N N 358 MET HE1 H N N 359 MET HE2 H N N 360 MET HE3 H N N 361 MET HXT H N N 362 PHE N N N N 363 PHE CA C N S 364 PHE C C N N 365 PHE O O N N 366 PHE CB C N N 367 PHE CG C Y N 368 PHE CD1 C Y N 369 PHE CD2 C Y N 370 PHE CE1 C Y N 371 PHE CE2 C Y N 372 PHE CZ C Y N 373 PHE OXT O N N 374 PHE H H N N 375 PHE H2 H N N 376 PHE HA H N N 377 PHE HB2 H N N 378 PHE HB3 H N N 379 PHE HD1 H N N 380 PHE HD2 H N N 381 PHE HE1 H N N 382 PHE HE2 H N N 383 PHE HZ H N N 384 PHE HXT H N N 385 PRO N N N N 386 PRO CA C N S 387 PRO C C N N 388 PRO O O N N 389 PRO CB C N N 390 PRO CG C N N 391 PRO CD C N N 392 PRO OXT O N N 393 PRO H H N N 394 PRO HA H N N 395 PRO HB2 H N N 396 PRO HB3 H N N 397 PRO HG2 H N N 398 PRO HG3 H N N 399 PRO HD2 H N N 400 PRO HD3 H N N 401 PRO HXT H N N 402 SER N N N N 403 SER CA C N S 404 SER C C N N 405 SER O O N N 406 SER CB C N N 407 SER OG O N N 408 SER OXT O N N 409 SER H H N N 410 SER H2 H N N 411 SER HA H N N 412 SER HB2 H N N 413 SER HB3 H N N 414 SER HG H N N 415 SER HXT H N N 416 THR N N N N 417 THR CA C N S 418 THR C C N N 419 THR O O N N 420 THR CB C N R 421 THR OG1 O N N 422 THR CG2 C N N 423 THR OXT O N N 424 THR H H N N 425 THR H2 H N N 426 THR HA H N N 427 THR HB H N N 428 THR HG1 H N N 429 THR HG21 H N N 430 THR HG22 H N N 431 THR HG23 H N N 432 THR HXT H N N 433 TRP N N N N 434 TRP CA C N S 435 TRP C C N N 436 TRP O O N N 437 TRP CB C N N 438 TRP CG C Y N 439 TRP CD1 C Y N 440 TRP CD2 C Y N 441 TRP NE1 N Y N 442 TRP CE2 C Y N 443 TRP CE3 C Y N 444 TRP CZ2 C Y N 445 TRP CZ3 C Y N 446 TRP CH2 C Y N 447 TRP OXT O N N 448 TRP H H N N 449 TRP H2 H N N 450 TRP HA H N N 451 TRP HB2 H N N 452 TRP HB3 H N N 453 TRP HD1 H N N 454 TRP HE1 H N N 455 TRP HE3 H N N 456 TRP HZ2 H N N 457 TRP HZ3 H N N 458 TRP HH2 H N N 459 TRP HXT H N N 460 TYR N N N N 461 TYR CA C N S 462 TYR C C N N 463 TYR O O N N 464 TYR CB C N N 465 TYR CG C Y N 466 TYR CD1 C Y N 467 TYR CD2 C Y N 468 TYR CE1 C Y N 469 TYR CE2 C Y N 470 TYR CZ C Y N 471 TYR OH O N N 472 TYR OXT O N N 473 TYR H H N N 474 TYR H2 H N N 475 TYR HA H N N 476 TYR HB2 H N N 477 TYR HB3 H N N 478 TYR HD1 H N N 479 TYR HD2 H N N 480 TYR HE1 H N N 481 TYR HE2 H N N 482 TYR HH H N N 483 TYR HXT H N N 484 VAL N N N N 485 VAL CA C N S 486 VAL C C N N 487 VAL O O N N 488 VAL CB C N N 489 VAL CG1 C N N 490 VAL CG2 C N N 491 VAL OXT O N N 492 VAL H H N N 493 VAL H2 H N N 494 VAL HA H N N 495 VAL HB H N N 496 VAL HG11 H N N 497 VAL HG12 H N N 498 VAL HG13 H N N 499 VAL HG21 H N N 500 VAL HG22 H N N 501 VAL HG23 H N N 502 VAL HXT H N N 503 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 DA OP3 P sing N N 55 DA OP3 HOP3 sing N N 56 DA P OP1 doub N N 57 DA P OP2 sing N N 58 DA P "O5'" sing N N 59 DA OP2 HOP2 sing N N 60 DA "O5'" "C5'" sing N N 61 DA "C5'" "C4'" sing N N 62 DA "C5'" "H5'" sing N N 63 DA "C5'" "H5''" sing N N 64 DA "C4'" "O4'" sing N N 65 DA "C4'" "C3'" sing N N 66 DA "C4'" "H4'" sing N N 67 DA "O4'" "C1'" sing N N 68 DA "C3'" "O3'" sing N N 69 DA "C3'" "C2'" sing N N 70 DA "C3'" "H3'" sing N N 71 DA "O3'" "HO3'" sing N N 72 DA "C2'" "C1'" sing N N 73 DA "C2'" "H2'" sing N N 74 DA "C2'" "H2''" sing N N 75 DA "C1'" N9 sing N N 76 DA "C1'" "H1'" sing N N 77 DA N9 C8 sing Y N 78 DA N9 C4 sing Y N 79 DA C8 N7 doub Y N 80 DA C8 H8 sing N N 81 DA N7 C5 sing Y N 82 DA C5 C6 sing Y N 83 DA C5 C4 doub Y N 84 DA C6 N6 sing N N 85 DA C6 N1 doub Y N 86 DA N6 H61 sing N N 87 DA N6 H62 sing N N 88 DA N1 C2 sing Y N 89 DA C2 N3 doub Y N 90 DA C2 H2 sing N N 91 DA N3 C4 sing Y N 92 DC OP3 P sing N N 93 DC OP3 HOP3 sing N N 94 DC P OP1 doub N N 95 DC P OP2 sing N N 96 DC P "O5'" sing N N 97 DC OP2 HOP2 sing N N 98 DC "O5'" "C5'" sing N N 99 DC "C5'" "C4'" sing N N 100 DC "C5'" "H5'" sing N N 101 DC "C5'" "H5''" sing N N 102 DC "C4'" "O4'" sing N N 103 DC "C4'" "C3'" sing N N 104 DC "C4'" "H4'" sing N N 105 DC "O4'" "C1'" sing N N 106 DC "C3'" "O3'" sing N N 107 DC "C3'" "C2'" sing N N 108 DC "C3'" "H3'" sing N N 109 DC "O3'" "HO3'" sing N N 110 DC "C2'" "C1'" sing N N 111 DC "C2'" "H2'" sing N N 112 DC "C2'" "H2''" sing N N 113 DC "C1'" N1 sing N N 114 DC "C1'" "H1'" sing N N 115 DC N1 C2 sing N N 116 DC N1 C6 sing N N 117 DC C2 O2 doub N N 118 DC C2 N3 sing N N 119 DC N3 C4 doub N N 120 DC C4 N4 sing N N 121 DC C4 C5 sing N N 122 DC N4 H41 sing N N 123 DC N4 H42 sing N N 124 DC C5 C6 doub N N 125 DC C5 H5 sing N N 126 DC C6 H6 sing N N 127 DG OP3 P sing N N 128 DG OP3 HOP3 sing N N 129 DG P OP1 doub N N 130 DG P OP2 sing N N 131 DG P "O5'" sing N N 132 DG OP2 HOP2 sing N N 133 DG "O5'" "C5'" sing N N 134 DG "C5'" "C4'" sing N N 135 DG "C5'" "H5'" sing N N 136 DG "C5'" "H5''" sing N N 137 DG "C4'" "O4'" sing N N 138 DG "C4'" "C3'" sing N N 139 DG "C4'" "H4'" sing N N 140 DG "O4'" "C1'" sing N N 141 DG "C3'" "O3'" sing N N 142 DG "C3'" "C2'" sing N N 143 DG "C3'" "H3'" sing N N 144 DG "O3'" "HO3'" sing N N 145 DG "C2'" "C1'" sing N N 146 DG "C2'" "H2'" sing N N 147 DG "C2'" "H2''" sing N N 148 DG "C1'" N9 sing N N 149 DG "C1'" "H1'" sing N N 150 DG N9 C8 sing Y N 151 DG N9 C4 sing Y N 152 DG C8 N7 doub Y N 153 DG C8 H8 sing N N 154 DG N7 C5 sing Y N 155 DG C5 C6 sing N N 156 DG C5 C4 doub Y N 157 DG C6 O6 doub N N 158 DG C6 N1 sing N N 159 DG N1 C2 sing N N 160 DG N1 H1 sing N N 161 DG C2 N2 sing N N 162 DG C2 N3 doub N N 163 DG N2 H21 sing N N 164 DG N2 H22 sing N N 165 DG N3 C4 sing N N 166 DT OP3 P sing N N 167 DT OP3 HOP3 sing N N 168 DT P OP1 doub N N 169 DT P OP2 sing N N 170 DT P "O5'" sing N N 171 DT OP2 HOP2 sing N N 172 DT "O5'" "C5'" sing N N 173 DT "C5'" "C4'" sing N N 174 DT "C5'" "H5'" sing N N 175 DT "C5'" "H5''" sing N N 176 DT "C4'" "O4'" sing N N 177 DT "C4'" "C3'" sing N N 178 DT "C4'" "H4'" sing N N 179 DT "O4'" "C1'" sing N N 180 DT "C3'" "O3'" sing N N 181 DT "C3'" "C2'" sing N N 182 DT "C3'" "H3'" sing N N 183 DT "O3'" "HO3'" sing N N 184 DT "C2'" "C1'" sing N N 185 DT "C2'" "H2'" sing N N 186 DT "C2'" "H2''" sing N N 187 DT "C1'" N1 sing N N 188 DT "C1'" "H1'" sing N N 189 DT N1 C2 sing N N 190 DT N1 C6 sing N N 191 DT C2 O2 doub N N 192 DT C2 N3 sing N N 193 DT N3 C4 sing N N 194 DT N3 H3 sing N N 195 DT C4 O4 doub N N 196 DT C4 C5 sing N N 197 DT C5 C7 sing N N 198 DT C5 C6 doub N N 199 DT C7 H71 sing N N 200 DT C7 H72 sing N N 201 DT C7 H73 sing N N 202 DT C6 H6 sing N N 203 GLN N CA sing N N 204 GLN N H sing N N 205 GLN N H2 sing N N 206 GLN CA C sing N N 207 GLN CA CB sing N N 208 GLN CA HA sing N N 209 GLN C O doub N N 210 GLN C OXT sing N N 211 GLN CB CG sing N N 212 GLN CB HB2 sing N N 213 GLN CB HB3 sing N N 214 GLN CG CD sing N N 215 GLN CG HG2 sing N N 216 GLN CG HG3 sing N N 217 GLN CD OE1 doub N N 218 GLN CD NE2 sing N N 219 GLN NE2 HE21 sing N N 220 GLN NE2 HE22 sing N N 221 GLN OXT HXT sing N N 222 GLU N CA sing N N 223 GLU N H sing N N 224 GLU N H2 sing N N 225 GLU CA C sing N N 226 GLU CA CB sing N N 227 GLU CA HA sing N N 228 GLU C O doub N N 229 GLU C OXT sing N N 230 GLU CB CG sing N N 231 GLU CB HB2 sing N N 232 GLU CB HB3 sing N N 233 GLU CG CD sing N N 234 GLU CG HG2 sing N N 235 GLU CG HG3 sing N N 236 GLU CD OE1 doub N N 237 GLU CD OE2 sing N N 238 GLU OE2 HE2 sing N N 239 GLU OXT HXT sing N N 240 GLY N CA sing N N 241 GLY N H sing N N 242 GLY N H2 sing N N 243 GLY CA C sing N N 244 GLY CA HA2 sing N N 245 GLY CA HA3 sing N N 246 GLY C O doub N N 247 GLY C OXT sing N N 248 GLY OXT HXT sing N N 249 HIS N CA sing N N 250 HIS N H sing N N 251 HIS N H2 sing N N 252 HIS CA C sing N N 253 HIS CA CB sing N N 254 HIS CA HA sing N N 255 HIS C O doub N N 256 HIS C OXT sing N N 257 HIS CB CG sing N N 258 HIS CB HB2 sing N N 259 HIS CB HB3 sing N N 260 HIS CG ND1 sing Y N 261 HIS CG CD2 doub Y N 262 HIS ND1 CE1 doub Y N 263 HIS ND1 HD1 sing N N 264 HIS CD2 NE2 sing Y N 265 HIS CD2 HD2 sing N N 266 HIS CE1 NE2 sing Y N 267 HIS CE1 HE1 sing N N 268 HIS NE2 HE2 sing N N 269 HIS OXT HXT sing N N 270 HOH O H1 sing N N 271 HOH O H2 sing N N 272 ILE N CA sing N N 273 ILE N H sing N N 274 ILE N H2 sing N N 275 ILE CA C sing N N 276 ILE CA CB sing N N 277 ILE CA HA sing N N 278 ILE C O doub N N 279 ILE C OXT sing N N 280 ILE CB CG1 sing N N 281 ILE CB CG2 sing N N 282 ILE CB HB sing N N 283 ILE CG1 CD1 sing N N 284 ILE CG1 HG12 sing N N 285 ILE CG1 HG13 sing N N 286 ILE CG2 HG21 sing N N 287 ILE CG2 HG22 sing N N 288 ILE CG2 HG23 sing N N 289 ILE CD1 HD11 sing N N 290 ILE CD1 HD12 sing N N 291 ILE CD1 HD13 sing N N 292 ILE OXT HXT sing N N 293 LEU N CA sing N N 294 LEU N H sing N N 295 LEU N H2 sing N N 296 LEU CA C sing N N 297 LEU CA CB sing N N 298 LEU CA HA sing N N 299 LEU C O doub N N 300 LEU C OXT sing N N 301 LEU CB CG sing N N 302 LEU CB HB2 sing N N 303 LEU CB HB3 sing N N 304 LEU CG CD1 sing N N 305 LEU CG CD2 sing N N 306 LEU CG HG sing N N 307 LEU CD1 HD11 sing N N 308 LEU CD1 HD12 sing N N 309 LEU CD1 HD13 sing N N 310 LEU CD2 HD21 sing N N 311 LEU CD2 HD22 sing N N 312 LEU CD2 HD23 sing N N 313 LEU OXT HXT sing N N 314 LYS N CA sing N N 315 LYS N H sing N N 316 LYS N H2 sing N N 317 LYS CA C sing N N 318 LYS CA CB sing N N 319 LYS CA HA sing N N 320 LYS C O doub N N 321 LYS C OXT sing N N 322 LYS CB CG sing N N 323 LYS CB HB2 sing N N 324 LYS CB HB3 sing N N 325 LYS CG CD sing N N 326 LYS CG HG2 sing N N 327 LYS CG HG3 sing N N 328 LYS CD CE sing N N 329 LYS CD HD2 sing N N 330 LYS CD HD3 sing N N 331 LYS CE NZ sing N N 332 LYS CE HE2 sing N N 333 LYS CE HE3 sing N N 334 LYS NZ HZ1 sing N N 335 LYS NZ HZ2 sing N N 336 LYS NZ HZ3 sing N N 337 LYS OXT HXT sing N N 338 MET N CA sing N N 339 MET N H sing N N 340 MET N H2 sing N N 341 MET CA C sing N N 342 MET CA CB sing N N 343 MET CA HA sing N N 344 MET C O doub N N 345 MET C OXT sing N N 346 MET CB CG sing N N 347 MET CB HB2 sing N N 348 MET CB HB3 sing N N 349 MET CG SD sing N N 350 MET CG HG2 sing N N 351 MET CG HG3 sing N N 352 MET SD CE sing N N 353 MET CE HE1 sing N N 354 MET CE HE2 sing N N 355 MET CE HE3 sing N N 356 MET OXT HXT sing N N 357 PHE N CA sing N N 358 PHE N H sing N N 359 PHE N H2 sing N N 360 PHE CA C sing N N 361 PHE CA CB sing N N 362 PHE CA HA sing N N 363 PHE C O doub N N 364 PHE C OXT sing N N 365 PHE CB CG sing N N 366 PHE CB HB2 sing N N 367 PHE CB HB3 sing N N 368 PHE CG CD1 doub Y N 369 PHE CG CD2 sing Y N 370 PHE CD1 CE1 sing Y N 371 PHE CD1 HD1 sing N N 372 PHE CD2 CE2 doub Y N 373 PHE CD2 HD2 sing N N 374 PHE CE1 CZ doub Y N 375 PHE CE1 HE1 sing N N 376 PHE CE2 CZ sing Y N 377 PHE CE2 HE2 sing N N 378 PHE CZ HZ sing N N 379 PHE OXT HXT sing N N 380 PRO N CA sing N N 381 PRO N CD sing N N 382 PRO N H sing N N 383 PRO CA C sing N N 384 PRO CA CB sing N N 385 PRO CA HA sing N N 386 PRO C O doub N N 387 PRO C OXT sing N N 388 PRO CB CG sing N N 389 PRO CB HB2 sing N N 390 PRO CB HB3 sing N N 391 PRO CG CD sing N N 392 PRO CG HG2 sing N N 393 PRO CG HG3 sing N N 394 PRO CD HD2 sing N N 395 PRO CD HD3 sing N N 396 PRO OXT HXT sing N N 397 SER N CA sing N N 398 SER N H sing N N 399 SER N H2 sing N N 400 SER CA C sing N N 401 SER CA CB sing N N 402 SER CA HA sing N N 403 SER C O doub N N 404 SER C OXT sing N N 405 SER CB OG sing N N 406 SER CB HB2 sing N N 407 SER CB HB3 sing N N 408 SER OG HG sing N N 409 SER OXT HXT sing N N 410 THR N CA sing N N 411 THR N H sing N N 412 THR N H2 sing N N 413 THR CA C sing N N 414 THR CA CB sing N N 415 THR CA HA sing N N 416 THR C O doub N N 417 THR C OXT sing N N 418 THR CB OG1 sing N N 419 THR CB CG2 sing N N 420 THR CB HB sing N N 421 THR OG1 HG1 sing N N 422 THR CG2 HG21 sing N N 423 THR CG2 HG22 sing N N 424 THR CG2 HG23 sing N N 425 THR OXT HXT sing N N 426 TRP N CA sing N N 427 TRP N H sing N N 428 TRP N H2 sing N N 429 TRP CA C sing N N 430 TRP CA CB sing N N 431 TRP CA HA sing N N 432 TRP C O doub N N 433 TRP C OXT sing N N 434 TRP CB CG sing N N 435 TRP CB HB2 sing N N 436 TRP CB HB3 sing N N 437 TRP CG CD1 doub Y N 438 TRP CG CD2 sing Y N 439 TRP CD1 NE1 sing Y N 440 TRP CD1 HD1 sing N N 441 TRP CD2 CE2 doub Y N 442 TRP CD2 CE3 sing Y N 443 TRP NE1 CE2 sing Y N 444 TRP NE1 HE1 sing N N 445 TRP CE2 CZ2 sing Y N 446 TRP CE3 CZ3 doub Y N 447 TRP CE3 HE3 sing N N 448 TRP CZ2 CH2 doub Y N 449 TRP CZ2 HZ2 sing N N 450 TRP CZ3 CH2 sing Y N 451 TRP CZ3 HZ3 sing N N 452 TRP CH2 HH2 sing N N 453 TRP OXT HXT sing N N 454 TYR N CA sing N N 455 TYR N H sing N N 456 TYR N H2 sing N N 457 TYR CA C sing N N 458 TYR CA CB sing N N 459 TYR CA HA sing N N 460 TYR C O doub N N 461 TYR C OXT sing N N 462 TYR CB CG sing N N 463 TYR CB HB2 sing N N 464 TYR CB HB3 sing N N 465 TYR CG CD1 doub Y N 466 TYR CG CD2 sing Y N 467 TYR CD1 CE1 sing Y N 468 TYR CD1 HD1 sing N N 469 TYR CD2 CE2 doub Y N 470 TYR CD2 HD2 sing N N 471 TYR CE1 CZ doub Y N 472 TYR CE1 HE1 sing N N 473 TYR CE2 CZ sing Y N 474 TYR CE2 HE2 sing N N 475 TYR CZ OH sing N N 476 TYR OH HH sing N N 477 TYR OXT HXT sing N N 478 VAL N CA sing N N 479 VAL N H sing N N 480 VAL N H2 sing N N 481 VAL CA C sing N N 482 VAL CA CB sing N N 483 VAL CA HA sing N N 484 VAL C O doub N N 485 VAL C OXT sing N N 486 VAL CB CG1 sing N N 487 VAL CB CG2 sing N N 488 VAL CB HB sing N N 489 VAL CG1 HG11 sing N N 490 VAL CG1 HG12 sing N N 491 VAL CG1 HG13 sing N N 492 VAL CG2 HG21 sing N N 493 VAL CG2 HG22 sing N N 494 VAL CG2 HG23 sing N N 495 VAL OXT HXT sing N N 496 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4RDU 'double helix' 4RDU 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 2 1_555 C DC 13 1_555 -0.362 -0.241 -0.190 7.868 -0.065 -0.137 1 B_DG2:DC13_C B 2 ? C 13 ? 19 1 1 B DA 3 1_555 C DT 12 1_555 -0.048 -0.120 0.271 3.022 -13.654 -1.542 2 B_DA3:DT12_C B 3 ? C 12 ? 20 1 1 B DC 4 1_555 C DG 11 1_555 0.130 -0.213 0.461 1.157 -15.114 -1.185 3 B_DC4:DG11_C B 4 ? C 11 ? 19 1 1 B DT 5 1_555 C DA 10 1_555 -0.078 -0.117 0.086 -3.170 -12.692 2.980 4 B_DT5:DA10_C B 5 ? C 10 ? 20 1 1 B DA 6 1_555 C DT 9 1_555 0.054 -0.097 -0.162 7.465 -9.803 4.793 5 B_DA6:DT9_C B 6 ? C 9 ? 20 1 1 B DA 7 1_555 C DT 8 1_555 0.050 -0.174 0.092 7.589 -14.117 3.250 6 B_DA7:DT8_C B 7 ? C 8 ? 20 1 1 B DT 8 1_555 C DA 7 1_555 0.067 -0.043 0.000 4.404 -14.580 6.649 7 B_DT8:DA7_C B 8 ? C 7 ? 20 1 1 B DT 9 1_555 C DA 6 1_555 -0.070 -0.123 -0.341 3.370 -15.084 4.027 8 B_DT9:DA6_C B 9 ? C 6 ? 20 1 1 B DA 10 1_555 C DT 5 1_555 -0.045 -0.190 -0.231 -7.868 -7.934 5.037 9 B_DA10:DT5_C B 10 ? C 5 ? 20 1 1 B DG 11 1_555 C DC 4 1_555 -0.327 -0.219 -0.027 -10.015 -7.467 0.329 10 B_DG11:DC4_C B 11 ? C 4 ? 19 1 1 B DT 12 1_555 C DA 3 1_555 0.114 -0.037 0.122 -7.766 -7.203 -0.880 11 B_DT12:DA3_C B 12 ? C 3 ? 20 1 1 B DC 13 1_555 C DG 2 1_555 0.415 -0.152 -0.103 3.860 -4.931 2.401 12 B_DC13:DG2_C B 13 ? C 2 ? 19 1 1 B DG 14 1_555 C DC 1 1_555 0.192 -0.139 0.473 7.643 -16.037 -7.425 13 B_DG14:DC1_C B 14 ? C 1 ? 19 1 1 E DG 2 1_555 F DC 13 1_555 -0.414 0.205 -0.082 6.232 -2.407 5.895 14 E_DG2:DC13_F E 2 ? F 13 ? 19 1 1 E DA 3 1_555 F DT 12 1_555 0.441 0.023 0.096 10.331 -13.373 0.932 15 E_DA3:DT12_F E 3 ? F 12 ? 20 1 1 E DC 4 1_555 F DG 11 1_555 0.058 -0.080 0.145 4.824 -18.090 5.351 16 E_DC4:DG11_F E 4 ? F 11 ? 19 1 1 E DT 5 1_555 F DA 10 1_555 0.220 -0.359 0.124 3.650 -6.665 1.723 17 E_DT5:DA10_F E 5 ? F 10 ? 20 1 1 E DA 6 1_555 F DT 9 1_555 -0.199 -0.136 0.004 6.120 -14.221 3.500 18 E_DA6:DT9_F E 6 ? F 9 ? 20 1 1 E DA 7 1_555 F DT 8 1_555 -0.130 -0.040 0.134 3.015 -14.700 1.219 19 E_DA7:DT8_F E 7 ? F 8 ? 20 1 1 E DT 8 1_555 F DA 7 1_555 -0.073 -0.078 0.298 1.012 -16.242 6.029 20 E_DT8:DA7_F E 8 ? F 7 ? 20 1 1 E DT 9 1_555 F DA 6 1_555 -0.099 -0.079 -0.071 -0.240 -13.267 2.709 21 E_DT9:DA6_F E 9 ? F 6 ? 20 1 1 E DA 10 1_555 F DT 5 1_555 0.096 -0.167 -0.293 -12.526 -6.452 6.245 22 E_DA10:DT5_F E 10 ? F 5 ? 20 1 1 E DG 11 1_555 F DC 4 1_555 -0.196 -0.122 0.006 -8.620 -5.830 -0.787 23 E_DG11:DC4_F E 11 ? F 4 ? 19 1 1 E DT 12 1_555 F DA 3 1_555 -0.019 0.042 0.220 -6.150 -6.410 -1.284 24 E_DT12:DA3_F E 12 ? F 3 ? 20 1 1 E DC 13 1_555 F DG 2 1_555 0.208 -0.073 -0.001 -0.037 -0.931 3.578 25 E_DC13:DG2_F E 13 ? F 2 ? 19 1 1 E DG 14 1_555 F DC 1 1_555 0.104 -0.131 0.153 4.441 -10.550 -10.064 26 E_DG14:DC1_F E 14 ? F 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 2 1_555 C DC 13 1_555 B DA 3 1_555 C DT 12 1_555 -0.650 -0.249 3.408 -5.834 -2.763 39.346 -0.027 0.239 3.474 -4.070 8.594 39.851 1 BB_DG2DA3:DT12DC13_CC B 2 ? C 13 ? B 3 ? C 12 ? 1 B DA 3 1_555 C DT 12 1_555 B DC 4 1_555 C DG 11 1_555 0.492 -1.300 3.298 -2.022 4.748 35.092 -2.816 -1.098 3.069 7.823 3.331 35.458 2 BB_DA3DC4:DG11DT12_CC B 3 ? C 12 ? B 4 ? C 11 ? 1 B DC 4 1_555 C DG 11 1_555 B DT 5 1_555 C DA 10 1_555 -0.138 -0.745 3.349 6.234 3.033 32.619 -1.808 1.288 3.189 5.325 -10.945 33.328 3 BB_DC4DT5:DA10DG11_CC B 4 ? C 11 ? B 5 ? C 10 ? 1 B DT 5 1_555 C DA 10 1_555 B DA 6 1_555 C DT 9 1_555 -0.298 0.763 3.186 3.216 7.661 33.007 0.085 1.021 3.234 13.224 -5.551 34.008 4 BB_DT5DA6:DT9DA10_CC B 5 ? C 10 ? B 6 ? C 9 ? 1 B DA 6 1_555 C DT 9 1_555 B DA 7 1_555 C DT 8 1_555 0.211 -0.532 3.193 -2.921 2.805 32.628 -1.404 -0.856 3.107 4.969 5.175 32.871 5 BB_DA6DA7:DT8DT9_CC B 6 ? C 9 ? B 7 ? C 8 ? 1 B DA 7 1_555 C DT 8 1_555 B DT 8 1_555 C DA 7 1_555 0.677 -0.921 3.265 1.327 0.417 32.738 -1.704 -0.972 3.278 0.740 -2.353 32.766 6 BB_DA7DT8:DA7DT8_CC B 7 ? C 8 ? B 8 ? C 7 ? 1 B DT 8 1_555 C DA 7 1_555 B DT 9 1_555 C DA 6 1_555 -0.169 -0.353 3.209 4.056 4.811 34.517 -1.287 0.871 3.095 8.026 -6.765 35.069 7 BB_DT8DT9:DA6DA7_CC B 8 ? C 7 ? B 9 ? C 6 ? 1 B DT 9 1_555 C DA 6 1_555 B DA 10 1_555 C DT 5 1_555 1.201 0.635 3.521 3.209 8.456 38.436 -0.170 -1.358 3.659 12.632 -4.794 39.446 8 BB_DT9DA10:DT5DA6_CC B 9 ? C 6 ? B 10 ? C 5 ? 1 B DA 10 1_555 C DT 5 1_555 B DG 11 1_555 C DC 4 1_555 -1.345 -0.005 3.283 -7.626 8.615 33.105 -1.373 1.028 3.395 14.582 12.908 34.995 9 BB_DA10DG11:DC4DT5_CC B 10 ? C 5 ? B 11 ? C 4 ? 1 B DG 11 1_555 C DC 4 1_555 B DT 12 1_555 C DA 3 1_555 -0.806 -0.721 3.256 0.301 0.269 34.901 -1.242 1.390 3.244 0.448 -0.502 34.904 10 BB_DG11DT12:DA3DC4_CC B 11 ? C 4 ? B 12 ? C 3 ? 1 B DT 12 1_555 C DA 3 1_555 B DC 13 1_555 C DG 2 1_555 0.983 0.833 3.076 3.737 1.950 35.819 1.080 -1.078 3.198 3.158 -6.050 36.058 11 BB_DT12DC13:DG2DA3_CC B 12 ? C 3 ? B 13 ? C 2 ? 1 B DC 13 1_555 C DG 2 1_555 B DG 14 1_555 C DC 1 1_555 -0.952 0.807 3.213 -4.879 2.783 38.250 0.874 0.832 3.353 4.220 7.396 38.645 12 BB_DC13DG14:DC1DG2_CC B 13 ? C 2 ? B 14 ? C 1 ? 1 E DG 2 1_555 F DC 13 1_555 E DA 3 1_555 F DT 12 1_555 -0.533 0.327 3.239 -3.335 0.213 41.632 0.436 0.399 3.271 0.298 4.683 41.760 13 EE_DG2DA3:DT12DC13_FF E 2 ? F 13 ? E 3 ? F 12 ? 1 E DA 3 1_555 F DT 12 1_555 E DC 4 1_555 F DG 11 1_555 0.649 -0.943 3.394 -0.487 -2.308 29.059 -1.346 -1.400 3.445 -4.591 0.969 29.153 14 EE_DA3DC4:DG11DT12_FF E 3 ? F 12 ? E 4 ? F 11 ? 1 E DC 4 1_555 F DG 11 1_555 E DT 5 1_555 F DA 10 1_555 -0.266 -0.560 3.297 1.718 4.773 35.201 -1.610 0.685 3.180 7.842 -2.822 35.553 15 EE_DC4DT5:DA10DG11_FF E 4 ? F 11 ? E 5 ? F 10 ? 1 E DT 5 1_555 F DA 10 1_555 E DA 6 1_555 F DT 9 1_555 0.078 0.258 3.221 2.984 5.529 33.868 -0.419 0.329 3.217 9.391 -5.068 34.429 16 EE_DT5DA6:DT9DA10_FF E 5 ? F 10 ? E 6 ? F 9 ? 1 E DA 6 1_555 F DT 9 1_555 E DA 7 1_555 F DT 8 1_555 0.132 -0.447 3.239 -2.807 1.973 33.462 -1.091 -0.679 3.187 3.415 4.860 33.632 17 EE_DA6DA7:DT8DT9_FF E 6 ? F 9 ? E 7 ? F 8 ? 1 E DA 7 1_555 F DT 8 1_555 E DT 8 1_555 F DA 7 1_555 0.516 -0.911 3.281 -0.172 -0.844 33.917 -1.426 -0.911 3.299 -1.447 0.295 33.928 18 EE_DA7DT8:DA7DT8_FF E 7 ? F 8 ? E 8 ? F 7 ? 1 E DT 8 1_555 F DA 7 1_555 E DT 9 1_555 F DA 6 1_555 -0.213 -0.291 3.183 2.929 -0.011 35.510 -0.474 0.762 3.156 -0.018 -4.793 35.626 19 EE_DT8DT9:DA6DA7_FF E 8 ? F 7 ? E 9 ? F 6 ? 1 E DT 9 1_555 F DA 6 1_555 E DA 10 1_555 F DT 5 1_555 1.330 0.621 3.596 5.906 6.561 40.297 0.073 -1.161 3.797 9.388 -8.450 41.213 20 EE_DT9DA10:DT5DA6_FF E 9 ? F 6 ? E 10 ? F 5 ? 1 E DA 10 1_555 F DT 5 1_555 E DG 11 1_555 F DC 4 1_555 -1.578 0.196 3.105 -7.674 7.135 33.490 -0.757 1.457 3.345 12.022 12.929 35.046 21 EE_DA10DG11:DC4DT5_FF E 10 ? F 5 ? E 11 ? F 4 ? 1 E DG 11 1_555 F DC 4 1_555 E DT 12 1_555 F DA 3 1_555 -0.798 -0.671 3.209 -1.658 -1.234 33.906 -0.954 1.104 3.265 -2.113 2.841 33.967 22 EE_DG11DT12:DA3DC4_FF E 11 ? F 4 ? E 12 ? F 3 ? 1 E DT 12 1_555 F DA 3 1_555 E DC 13 1_555 F DG 2 1_555 1.233 0.662 3.183 3.161 2.353 36.195 0.734 -1.536 3.311 3.773 -5.070 36.401 23 EE_DT12DC13:DG2DA3_FF E 12 ? F 3 ? E 13 ? F 2 ? 1 E DC 13 1_555 F DG 2 1_555 E DG 14 1_555 F DC 1 1_555 -1.470 0.714 3.267 -3.537 1.093 34.771 1.020 1.900 3.416 1.822 5.898 34.962 24 EE_DC13DG14:DC1DG2_FF E 13 ? F 2 ? E 14 ? F 1 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1IG7 _pdbx_initial_refinement_model.details ? #