data_4RDU # _entry.id 4RDU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4RDU NDB NA3178 RCSB RCSB087222 WWPDB D_1000087222 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-430652 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4RDU _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-09-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for Stem Cell Biology (STEMCELL)' 2 # _citation.id primary _citation.title 'Crystal structure of a distal-less homeobox protein 5 (Dlx5) from Homo sapiens at 1.85 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Joint Center for Structural Genomics (JCSG)' 1 primary 'Partnership for Stem Cell Biology (STEMCELL)' 2 # _cell.entry_id 4RDU _cell.length_a 34.182 _cell.length_b 42.913 _cell.length_c 56.104 _cell.angle_alpha 84.130 _cell.angle_beta 77.330 _cell.angle_gamma 67.130 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4RDU _symmetry.Int_Tables_number 1 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Homeobox protein DLX-5' 7663.090 2 ? ? 'DNA binding residues 137-198' ? 2 polymer syn '(DC)(DG)(DA)(DC)(DT)(DA)(DA)(DT)(DT)(DA)(DG)(DT)(DC)(DG)' 4279.804 4 ? ? ? ? 3 water nat water 18.015 233 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GHMVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKN GHMVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKN A,D JCSG-430652 2 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DC)(DT)(DA)(DA)(DT)(DT)(DA)(DG)(DT)(DC)(DG)' CGACTAATTAGTCG B,C,E,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 VAL n 1 5 ARG n 1 6 LYS n 1 7 PRO n 1 8 ARG n 1 9 THR n 1 10 ILE n 1 11 TYR n 1 12 SER n 1 13 SER n 1 14 PHE n 1 15 GLN n 1 16 LEU n 1 17 ALA n 1 18 ALA n 1 19 LEU n 1 20 GLN n 1 21 ARG n 1 22 ARG n 1 23 PHE n 1 24 GLN n 1 25 LYS n 1 26 THR n 1 27 GLN n 1 28 TYR n 1 29 LEU n 1 30 ALA n 1 31 LEU n 1 32 PRO n 1 33 GLU n 1 34 ARG n 1 35 ALA n 1 36 GLU n 1 37 LEU n 1 38 ALA n 1 39 ALA n 1 40 SER n 1 41 LEU n 1 42 GLY n 1 43 LEU n 1 44 THR n 1 45 GLN n 1 46 THR n 1 47 GLN n 1 48 VAL n 1 49 LYS n 1 50 ILE n 1 51 TRP n 1 52 PHE n 1 53 GLN n 1 54 ASN n 1 55 LYS n 1 56 ARG n 1 57 SER n 1 58 LYS n 1 59 ILE n 1 60 LYS n 1 61 LYS n 1 62 ILE n 1 63 MET n 1 64 LYS n 1 65 ASN n 2 1 DC n 2 2 DG n 2 3 DA n 2 4 DC n 2 5 DT n 2 6 DA n 2 7 DA n 2 8 DT n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DT n 2 13 DC n 2 14 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC006226, DLX5' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28bGB1Tev _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DLX5_HUMAN P56178 1 KKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKN 135 ? 2 PDB 4RDU 4RDU 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4RDU A 2 ? 65 ? P56178 135 ? 198 ? 135 198 2 1 4RDU D 2 ? 65 ? P56178 135 ? 198 ? 135 198 3 2 4RDU B 1 ? 14 ? 4RDU 1 ? 14 ? 1 14 4 2 4RDU C 1 ? 14 ? 4RDU 1 ? 14 ? 1 14 5 2 4RDU E 1 ? 14 ? 4RDU 1 ? 14 ? 1 14 6 2 4RDU F 1 ? 14 ? 4RDU 1 ? 14 ? 1 14 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4RDU GLY A 1 ? UNP P56178 ? ? 'LEADER SEQUENCE' 0 1 1 4RDU HIS A 2 ? UNP P56178 LYS 135 'ENGINEERED MUTATION' 135 2 1 4RDU MET A 3 ? UNP P56178 LYS 136 'ENGINEERED MUTATION' 136 3 2 4RDU GLY D 1 ? UNP P56178 ? ? 'LEADER SEQUENCE' 0 4 2 4RDU HIS D 2 ? UNP P56178 LYS 135 'ENGINEERED MUTATION' 135 5 2 4RDU MET D 3 ? UNP P56178 LYS 136 'ENGINEERED MUTATION' 136 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4RDU # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details ;0.08M sodium chloride, 45.00% 2-methyl-2,4-pentanediol, 0.012M spermine tetrahydrochloride, 0.1M sodium cacodylate pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 289K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Vertical focusing mirror; double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2014-07-24 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL14-1 _diffrn_source.type 'SSRL BEAMLINE BL14-1' _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4RDU _reflns.d_resolution_high 1.85 _reflns.d_resolution_low 22.303 _reflns.number_all 23348 _reflns.number_obs 23348 _reflns.pdbx_netI_over_sigmaI 8.000 _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_redundancy 1.900 _reflns.percent_possible_obs 95.500 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate 33.646 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.850 1.900 ? 3315 ? 0.271 2.5 0.271 ? 1.900 ? 1723 94.100 1 1 1.900 1.950 ? 3173 ? 0.230 3.0 0.230 ? 1.900 ? 1655 95.000 2 1 1.950 2.010 ? 3145 ? 0.184 3.5 0.184 ? 1.900 ? 1635 95.100 3 1 2.010 2.070 ? 3048 ? 0.141 4.6 0.141 ? 1.900 ? 1590 94.900 4 1 2.070 2.140 ? 2954 ? 0.114 5.8 0.114 ? 1.900 ? 1533 95.200 5 1 2.140 2.210 ? 2825 ? 0.094 6.7 0.094 ? 1.900 ? 1468 95.800 6 1 2.210 2.290 ? 2789 ? 0.093 5.6 0.093 ? 1.900 ? 1452 95.700 7 1 2.290 2.390 ? 2722 ? 0.075 8.7 0.075 ? 1.900 ? 1422 96.300 8 1 2.390 2.490 ? 2530 ? 0.067 8.5 0.067 ? 1.900 ? 1305 95.600 9 1 2.490 2.620 ? 2460 ? 0.062 9.9 0.062 ? 1.900 ? 1280 96.000 10 1 2.620 2.760 ? 2296 ? 0.055 10.4 0.055 ? 1.900 ? 1195 96.400 11 1 2.760 2.930 ? 2256 ? 0.052 11.1 0.052 ? 1.900 ? 1172 96.700 12 1 2.930 3.130 ? 2123 ? 0.042 14.2 0.042 ? 1.900 ? 1099 96.600 13 1 3.130 3.380 ? 1912 ? 0.043 5.1 0.043 ? 1.900 ? 997 96.900 14 1 3.380 3.700 ? 1806 ? 0.040 7.6 0.040 ? 1.900 ? 934 97.100 15 1 3.700 4.140 ? 1624 ? 0.030 18.2 0.030 ? 1.900 ? 843 97.100 16 1 4.140 4.780 ? 1477 ? 0.038 13.3 0.038 ? 1.900 ? 763 97.700 17 1 4.780 5.850 ? 1189 ? 0.038 13.3 0.038 ? 1.900 ? 616 97.300 18 1 5.850 8.270 ? 938 ? 0.050 10.9 0.050 ? 1.900 ? 486 96.400 19 1 8.270 22.303 ? 322 ? 0.047 14.4 0.047 ? 1.800 ? 180 66.100 20 1 # _refine.entry_id 4RDU _refine.ls_d_res_high 1.8500 _refine.ls_d_res_low 22.303 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.1400 _refine.ls_number_reflns_obs 23315 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3.TLS GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD (MOTION DETERMINATION) SERVER. 4. WATERS WERE EXCLUDED FROM TLS ASSIGNMENT. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1850 _refine.ls_R_factor_R_work 0.1829 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2252 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1188 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 47.0789 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.7900 _refine.aniso_B[2][2] -3.4400 _refine.aniso_B[3][3] 3.5300 _refine.aniso_B[1][2] 1.6800 _refine.aniso_B[1][3] 0.9400 _refine.aniso_B[2][3] -1.4100 _refine.correlation_coeff_Fo_to_Fc 0.9710 _refine.correlation_coeff_Fo_to_Fc_free 0.9560 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1530 _refine.pdbx_overall_ESU_R_Free 0.1420 _refine.overall_SU_ML 0.1020 _refine.overall_SU_B 6.4920 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1IG7 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 158.200 _refine.B_iso_min 20.440 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.330 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1008 _refine_hist.pdbx_number_atoms_nucleic_acid 1114 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 233 _refine_hist.number_atoms_total 2355 _refine_hist.d_res_high 1.8500 _refine_hist.d_res_low 22.303 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2313 0.011 0.015 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1732 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3352 1.316 1.515 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 4015 1.409 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 133 4.955 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 47 30.428 21.915 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 224 13.370 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 13 23.005 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 324 0.100 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1830 0.009 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 527 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 'X-RAY DIFFRACTION' 1 1 'MEDIUM POSITIONAL' A 916 0.370 0.500 1 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM THERMAL' A 916 5.210 2.000 2 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 'MEDIUM POSITIONAL' B 443 0.380 0.500 3 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 'MEDIUM THERMAL' B 443 11.360 2.000 4 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 3 1 'MEDIUM POSITIONAL' C 410 0.350 0.500 5 ? ? ? ? ? ? 'X-RAY DIFFRACTION' 3 1 'MEDIUM THERMAL' C 410 6.410 2.000 6 ? ? ? ? ? ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.8970 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 90.8400 _refine_ls_shell.number_reflns_R_work 1571 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3070 _refine_ls_shell.R_factor_R_free 0.2930 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1656 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 D 2 1 B 2 2 E 3 1 C 3 2 F # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 4 A 138 A 198 ? . . . . . . . . 1 2 1 4 D 138 D 198 ? . . . . . . . . 2 1 1 4 B 1 B 14 ? . . . . . . . . 2 2 1 4 E 1 E 14 ? . . . . . . . . 3 1 1 4 C 1 C 13 ? . . . . . . . . 3 2 1 4 F 1 F 13 ? . . . . . . . . # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? # _struct.entry_id 4RDU _struct.title 'Crystal structure of a distal-less homeobox protein 5 (Dlx5) from Homo sapiens at 1.85 A resolution' _struct.pdbx_descriptor 'Homeobox protein DLX-5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PF00046 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSCRIPTION, TRANSCRIPTION-DNA complex, Partnership for Stem Cell Biology, STEMCELL ; _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.entry_id 4RDU # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 12 ? THR A 26 ? SER A 145 THR A 159 1 ? 15 HELX_P HELX_P2 2 ALA A 30 ? LEU A 41 ? ALA A 163 LEU A 174 1 ? 12 HELX_P HELX_P3 3 THR A 44 ? LYS A 64 ? THR A 177 LYS A 197 1 ? 21 HELX_P HELX_P4 4 SER D 12 ? THR D 26 ? SER D 145 THR D 159 1 ? 15 HELX_P HELX_P5 5 ALA D 30 ? LEU D 41 ? ALA D 163 LEU D 174 1 ? 12 HELX_P HELX_P6 6 THR D 44 ? ASN D 65 ? THR D 177 ASN D 198 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 13 N3 ? ? B DG 2 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 13 O2 ? ? B DG 2 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 13 N4 ? ? B DG 2 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 12 N3 ? ? B DA 3 C DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 12 O4 ? ? B DA 3 C DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 4 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 4 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 4 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 6 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 6 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 7 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 7 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 7 N1 ? ? B DT 8 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 7 N6 ? ? B DT 8 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 9 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 9 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 10 C DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 10 C DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 11 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 12 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 12 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 13 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 13 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 13 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 14 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 14 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 14 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 13 N3 ? ? E DG 2 F DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 13 O2 ? ? E DG 2 F DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 13 N4 ? ? E DG 2 F DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? E DA 3 N1 ? ? ? 1_555 F DT 12 N3 ? ? E DA 3 F DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? E DA 3 N6 ? ? ? 1_555 F DT 12 O4 ? ? E DA 3 F DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? E DC 4 N3 ? ? ? 1_555 F DG 11 N1 ? ? E DC 4 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? E DC 4 N4 ? ? ? 1_555 F DG 11 O6 ? ? E DC 4 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? E DC 4 O2 ? ? ? 1_555 F DG 11 N2 ? ? E DC 4 F DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? E DT 5 N3 ? ? ? 1_555 F DA 10 N1 ? ? E DT 5 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? E DT 5 O4 ? ? ? 1_555 F DA 10 N6 ? ? E DT 5 F DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? E DA 6 N1 ? ? ? 1_555 F DT 9 N3 ? ? E DA 6 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? E DA 6 N6 ? ? ? 1_555 F DT 9 O4 ? ? E DA 6 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? E DA 7 N1 ? ? ? 1_555 F DT 8 N3 ? ? E DA 7 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? E DA 7 N6 ? ? ? 1_555 F DT 8 O4 ? ? E DA 7 F DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? E DT 8 N3 ? ? ? 1_555 F DA 7 N1 ? ? E DT 8 F DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? E DT 8 O4 ? ? ? 1_555 F DA 7 N6 ? ? E DT 8 F DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? E DT 9 N3 ? ? ? 1_555 F DA 6 N1 ? ? E DT 9 F DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? E DT 9 O4 ? ? ? 1_555 F DA 6 N6 ? ? E DT 9 F DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? E DA 10 N1 ? ? ? 1_555 F DT 5 N3 ? ? E DA 10 F DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? E DA 10 N6 ? ? ? 1_555 F DT 5 O4 ? ? E DA 10 F DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? E DG 11 N1 ? ? ? 1_555 F DC 4 N3 ? ? E DG 11 F DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? E DG 11 N2 ? ? ? 1_555 F DC 4 O2 ? ? E DG 11 F DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? E DG 11 O6 ? ? ? 1_555 F DC 4 N4 ? ? E DG 11 F DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? E DT 12 N3 ? ? ? 1_555 F DA 3 N1 ? ? E DT 12 F DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? E DT 12 O4 ? ? ? 1_555 F DA 3 N6 ? ? E DT 12 F DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? E DC 13 N3 ? ? ? 1_555 F DG 2 N1 ? ? E DC 13 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? E DC 13 N4 ? ? ? 1_555 F DG 2 O6 ? ? E DC 13 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? E DC 13 O2 ? ? ? 1_555 F DG 2 N2 ? ? E DC 13 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? E DG 14 N1 ? ? ? 1_555 F DC 1 N3 ? ? E DG 14 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? E DG 14 N2 ? ? ? 1_555 F DC 1 O2 ? ? E DG 14 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? E DG 14 O6 ? ? ? 1_555 F DC 1 N4 ? ? E DG 14 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 4RDU _atom_sites.fract_transf_matrix[1][1] 0.029255 _atom_sites.fract_transf_matrix[1][2] -0.012341 _atom_sites.fract_transf_matrix[1][3] -0.006344 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025291 _atom_sites.fract_transf_matrix[2][3] -0.000479 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018272 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 HIS 2 135 ? ? ? A . n A 1 3 MET 3 136 ? ? ? A . n A 1 4 VAL 4 137 ? ? ? A . n A 1 5 ARG 5 138 138 ARG ARG A . n A 1 6 LYS 6 139 139 LYS LYS A . n A 1 7 PRO 7 140 140 PRO PRO A . n A 1 8 ARG 8 141 141 ARG ARG A . n A 1 9 THR 9 142 142 THR THR A . n A 1 10 ILE 10 143 143 ILE ILE A . n A 1 11 TYR 11 144 144 TYR TYR A . n A 1 12 SER 12 145 145 SER SER A . n A 1 13 SER 13 146 146 SER SER A . n A 1 14 PHE 14 147 147 PHE PHE A . n A 1 15 GLN 15 148 148 GLN GLN A . n A 1 16 LEU 16 149 149 LEU LEU A . n A 1 17 ALA 17 150 150 ALA ALA A . n A 1 18 ALA 18 151 151 ALA ALA A . n A 1 19 LEU 19 152 152 LEU LEU A . n A 1 20 GLN 20 153 153 GLN GLN A . n A 1 21 ARG 21 154 154 ARG ARG A . n A 1 22 ARG 22 155 155 ARG ARG A . n A 1 23 PHE 23 156 156 PHE PHE A . n A 1 24 GLN 24 157 157 GLN GLN A . n A 1 25 LYS 25 158 158 LYS LYS A . n A 1 26 THR 26 159 159 THR THR A . n A 1 27 GLN 27 160 160 GLN GLN A . n A 1 28 TYR 28 161 161 TYR TYR A . n A 1 29 LEU 29 162 162 LEU LEU A . n A 1 30 ALA 30 163 163 ALA ALA A . n A 1 31 LEU 31 164 164 LEU LEU A . n A 1 32 PRO 32 165 165 PRO PRO A . n A 1 33 GLU 33 166 166 GLU GLU A . n A 1 34 ARG 34 167 167 ARG ARG A . n A 1 35 ALA 35 168 168 ALA ALA A . n A 1 36 GLU 36 169 169 GLU GLU A . n A 1 37 LEU 37 170 170 LEU LEU A . n A 1 38 ALA 38 171 171 ALA ALA A . n A 1 39 ALA 39 172 172 ALA ALA A . n A 1 40 SER 40 173 173 SER SER A . n A 1 41 LEU 41 174 174 LEU LEU A . n A 1 42 GLY 42 175 175 GLY GLY A . n A 1 43 LEU 43 176 176 LEU LEU A . n A 1 44 THR 44 177 177 THR THR A . n A 1 45 GLN 45 178 178 GLN GLN A . n A 1 46 THR 46 179 179 THR THR A . n A 1 47 GLN 47 180 180 GLN GLN A . n A 1 48 VAL 48 181 181 VAL VAL A . n A 1 49 LYS 49 182 182 LYS LYS A . n A 1 50 ILE 50 183 183 ILE ILE A . n A 1 51 TRP 51 184 184 TRP TRP A . n A 1 52 PHE 52 185 185 PHE PHE A . n A 1 53 GLN 53 186 186 GLN GLN A . n A 1 54 ASN 54 187 187 ASN ASN A . n A 1 55 LYS 55 188 188 LYS LYS A . n A 1 56 ARG 56 189 189 ARG ARG A . n A 1 57 SER 57 190 190 SER SER A . n A 1 58 LYS 58 191 191 LYS LYS A . n A 1 59 ILE 59 192 192 ILE ILE A . n A 1 60 LYS 60 193 193 LYS LYS A . n A 1 61 LYS 61 194 194 LYS LYS A . n A 1 62 ILE 62 195 195 ILE ILE A . n A 1 63 MET 63 196 196 MET MET A . n A 1 64 LYS 64 197 197 LYS LYS A . n A 1 65 ASN 65 198 198 ASN ASN A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DC 4 4 4 DC DC B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DA 10 10 10 DA DA B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DT 12 12 12 DT DT B . n B 2 13 DC 13 13 13 DC DC B . n B 2 14 DG 14 14 14 DG DG B . n C 2 1 DC 1 1 1 DC DC C . n C 2 2 DG 2 2 2 DG DG C . n C 2 3 DA 3 3 3 DA DA C . n C 2 4 DC 4 4 4 DC DC C . n C 2 5 DT 5 5 5 DT DT C . n C 2 6 DA 6 6 6 DA DA C . n C 2 7 DA 7 7 7 DA DA C . n C 2 8 DT 8 8 8 DT DT C . n C 2 9 DT 9 9 9 DT DT C . n C 2 10 DA 10 10 10 DA DA C . n C 2 11 DG 11 11 11 DG DG C . n C 2 12 DT 12 12 12 DT DT C . n C 2 13 DC 13 13 13 DC DC C . n C 2 14 DG 14 14 14 DG DG C . n D 1 1 GLY 1 0 ? ? ? D . n D 1 2 HIS 2 135 ? ? ? D . n D 1 3 MET 3 136 ? ? ? D . n D 1 4 VAL 4 137 137 VAL VAL D . n D 1 5 ARG 5 138 138 ARG ARG D . n D 1 6 LYS 6 139 139 LYS LYS D . n D 1 7 PRO 7 140 140 PRO PRO D . n D 1 8 ARG 8 141 141 ARG ARG D . n D 1 9 THR 9 142 142 THR THR D . n D 1 10 ILE 10 143 143 ILE ILE D . n D 1 11 TYR 11 144 144 TYR TYR D . n D 1 12 SER 12 145 145 SER SER D . n D 1 13 SER 13 146 146 SER SER D . n D 1 14 PHE 14 147 147 PHE PHE D . n D 1 15 GLN 15 148 148 GLN GLN D . n D 1 16 LEU 16 149 149 LEU LEU D . n D 1 17 ALA 17 150 150 ALA ALA D . n D 1 18 ALA 18 151 151 ALA ALA D . n D 1 19 LEU 19 152 152 LEU LEU D . n D 1 20 GLN 20 153 153 GLN GLN D . n D 1 21 ARG 21 154 154 ARG ARG D . n D 1 22 ARG 22 155 155 ARG ARG D . n D 1 23 PHE 23 156 156 PHE PHE D . n D 1 24 GLN 24 157 157 GLN GLN D . n D 1 25 LYS 25 158 158 LYS LYS D . n D 1 26 THR 26 159 159 THR THR D . n D 1 27 GLN 27 160 160 GLN GLN D . n D 1 28 TYR 28 161 161 TYR TYR D . n D 1 29 LEU 29 162 162 LEU LEU D . n D 1 30 ALA 30 163 163 ALA ALA D . n D 1 31 LEU 31 164 164 LEU LEU D . n D 1 32 PRO 32 165 165 PRO PRO D . n D 1 33 GLU 33 166 166 GLU GLU D . n D 1 34 ARG 34 167 167 ARG ARG D . n D 1 35 ALA 35 168 168 ALA ALA D . n D 1 36 GLU 36 169 169 GLU GLU D . n D 1 37 LEU 37 170 170 LEU LEU D . n D 1 38 ALA 38 171 171 ALA ALA D . n D 1 39 ALA 39 172 172 ALA ALA D . n D 1 40 SER 40 173 173 SER SER D . n D 1 41 LEU 41 174 174 LEU LEU D . n D 1 42 GLY 42 175 175 GLY GLY D . n D 1 43 LEU 43 176 176 LEU LEU D . n D 1 44 THR 44 177 177 THR THR D . n D 1 45 GLN 45 178 178 GLN GLN D . n D 1 46 THR 46 179 179 THR THR D . n D 1 47 GLN 47 180 180 GLN GLN D . n D 1 48 VAL 48 181 181 VAL VAL D . n D 1 49 LYS 49 182 182 LYS LYS D . n D 1 50 ILE 50 183 183 ILE ILE D . n D 1 51 TRP 51 184 184 TRP TRP D . n D 1 52 PHE 52 185 185 PHE PHE D . n D 1 53 GLN 53 186 186 GLN GLN D . n D 1 54 ASN 54 187 187 ASN ASN D . n D 1 55 LYS 55 188 188 LYS LYS D . n D 1 56 ARG 56 189 189 ARG ARG D . n D 1 57 SER 57 190 190 SER SER D . n D 1 58 LYS 58 191 191 LYS LYS D . n D 1 59 ILE 59 192 192 ILE ILE D . n D 1 60 LYS 60 193 193 LYS LYS D . n D 1 61 LYS 61 194 194 LYS LYS D . n D 1 62 ILE 62 195 195 ILE ILE D . n D 1 63 MET 63 196 196 MET MET D . n D 1 64 LYS 64 197 197 LYS LYS D . n D 1 65 ASN 65 198 198 ASN ASN D . n E 2 1 DC 1 1 1 DC DC E . n E 2 2 DG 2 2 2 DG DG E . n E 2 3 DA 3 3 3 DA DA E . n E 2 4 DC 4 4 4 DC DC E . n E 2 5 DT 5 5 5 DT DT E . n E 2 6 DA 6 6 6 DA DA E . n E 2 7 DA 7 7 7 DA DA E . n E 2 8 DT 8 8 8 DT DT E . n E 2 9 DT 9 9 9 DT DT E . n E 2 10 DA 10 10 10 DA DA E . n E 2 11 DG 11 11 11 DG DG E . n E 2 12 DT 12 12 12 DT DT E . n E 2 13 DC 13 13 13 DC DC E . n E 2 14 DG 14 14 14 DG DG E . n F 2 1 DC 1 1 1 DC DC F . n F 2 2 DG 2 2 2 DG DG F . n F 2 3 DA 3 3 3 DA DA F . n F 2 4 DC 4 4 4 DC DC F . n F 2 5 DT 5 5 5 DT DT F . n F 2 6 DA 6 6 6 DA DA F . n F 2 7 DA 7 7 7 DA DA F . n F 2 8 DT 8 8 8 DT DT F . n F 2 9 DT 9 9 9 DT DT F . n F 2 10 DA 10 10 10 DA DA F . n F 2 11 DG 11 11 11 DG DG F . n F 2 12 DT 12 12 12 DT DT F . n F 2 13 DC 13 13 13 DC DC F . n F 2 14 DG 14 14 ? ? ? F . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for Stem Cell Biology' 2 STEMCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 HOH 1 201 205 HOH HOH A . G 3 HOH 2 202 211 HOH HOH A . G 3 HOH 3 203 215 HOH HOH A . G 3 HOH 4 204 219 HOH HOH A . G 3 HOH 5 205 222 HOH HOH A . G 3 HOH 6 206 228 HOH HOH A . G 3 HOH 7 207 231 HOH HOH A . G 3 HOH 8 208 239 HOH HOH A . G 3 HOH 9 209 240 HOH HOH A . G 3 HOH 10 210 241 HOH HOH A . G 3 HOH 11 211 244 HOH HOH A . G 3 HOH 12 212 246 HOH HOH A . G 3 HOH 13 213 247 HOH HOH A . G 3 HOH 14 214 249 HOH HOH A . G 3 HOH 15 215 252 HOH HOH A . G 3 HOH 16 216 253 HOH HOH A . G 3 HOH 17 217 255 HOH HOH A . G 3 HOH 18 218 257 HOH HOH A . G 3 HOH 19 219 271 HOH HOH A . G 3 HOH 20 220 273 HOH HOH A . G 3 HOH 21 221 281 HOH HOH A . G 3 HOH 22 222 284 HOH HOH A . G 3 HOH 23 223 286 HOH HOH A . G 3 HOH 24 224 287 HOH HOH A . G 3 HOH 25 225 288 HOH HOH A . G 3 HOH 26 226 296 HOH HOH A . G 3 HOH 27 227 297 HOH HOH A . G 3 HOH 28 228 299 HOH HOH A . G 3 HOH 29 229 301 HOH HOH A . G 3 HOH 30 230 303 HOH HOH A . G 3 HOH 31 231 305 HOH HOH A . G 3 HOH 32 232 310 HOH HOH A . G 3 HOH 33 233 312 HOH HOH A . G 3 HOH 34 234 313 HOH HOH A . G 3 HOH 35 235 316 HOH HOH A . G 3 HOH 36 236 320 HOH HOH A . G 3 HOH 37 237 321 HOH HOH A . G 3 HOH 38 238 323 HOH HOH A . G 3 HOH 39 239 324 HOH HOH A . G 3 HOH 40 240 325 HOH HOH A . G 3 HOH 41 241 326 HOH HOH A . G 3 HOH 42 242 327 HOH HOH A . G 3 HOH 43 243 328 HOH HOH A . G 3 HOH 44 244 329 HOH HOH A . G 3 HOH 45 245 330 HOH HOH A . G 3 HOH 46 246 331 HOH HOH A . G 3 HOH 47 247 332 HOH HOH A . G 3 HOH 48 248 333 HOH HOH A . G 3 HOH 49 249 334 HOH HOH A . G 3 HOH 50 250 335 HOH HOH A . G 3 HOH 51 251 336 HOH HOH A . G 3 HOH 52 252 337 HOH HOH A . G 3 HOH 53 253 342 HOH HOH A . G 3 HOH 54 254 343 HOH HOH A . G 3 HOH 55 255 344 HOH HOH A . G 3 HOH 56 256 346 HOH HOH A . G 3 HOH 57 257 347 HOH HOH A . G 3 HOH 58 258 348 HOH HOH A . G 3 HOH 59 259 349 HOH HOH A . G 3 HOH 60 260 350 HOH HOH A . G 3 HOH 61 261 351 HOH HOH A . G 3 HOH 62 262 353 HOH HOH A . G 3 HOH 63 263 355 HOH HOH A . G 3 HOH 64 264 356 HOH HOH A . G 3 HOH 65 265 359 HOH HOH A . G 3 HOH 66 266 360 HOH HOH A . G 3 HOH 67 267 362 HOH HOH A . G 3 HOH 68 268 367 HOH HOH A . G 3 HOH 69 269 370 HOH HOH A . G 3 HOH 70 270 372 HOH HOH A . G 3 HOH 71 271 376 HOH HOH A . G 3 HOH 72 272 378 HOH HOH A . G 3 HOH 73 273 379 HOH HOH A . G 3 HOH 74 274 383 HOH HOH A . G 3 HOH 75 275 384 HOH HOH A . G 3 HOH 76 276 385 HOH HOH A . G 3 HOH 77 277 386 HOH HOH A . G 3 HOH 78 278 387 HOH HOH A . G 3 HOH 79 279 388 HOH HOH A . G 3 HOH 80 280 389 HOH HOH A . G 3 HOH 81 281 390 HOH HOH A . G 3 HOH 82 282 396 HOH HOH A . G 3 HOH 83 283 397 HOH HOH A . G 3 HOH 84 284 404 HOH HOH A . G 3 HOH 85 285 405 HOH HOH A . G 3 HOH 86 286 406 HOH HOH A . G 3 HOH 87 287 407 HOH HOH A . G 3 HOH 88 288 408 HOH HOH A . G 3 HOH 89 289 409 HOH HOH A . G 3 HOH 90 290 410 HOH HOH A . G 3 HOH 91 291 412 HOH HOH A . G 3 HOH 92 292 413 HOH HOH A . G 3 HOH 93 293 415 HOH HOH A . G 3 HOH 94 294 417 HOH HOH A . G 3 HOH 95 295 425 HOH HOH A . G 3 HOH 96 296 428 HOH HOH A . G 3 HOH 97 297 429 HOH HOH A . G 3 HOH 98 298 430 HOH HOH A . G 3 HOH 99 299 212 HOH HOH A . G 3 HOH 100 300 216 HOH HOH A . G 3 HOH 101 301 214 HOH HOH A . H 3 HOH 1 101 203 HOH HOH B . H 3 HOH 2 102 204 HOH HOH B . H 3 HOH 3 103 208 HOH HOH B . H 3 HOH 4 104 217 HOH HOH B . H 3 HOH 5 105 225 HOH HOH B . H 3 HOH 6 106 227 HOH HOH B . H 3 HOH 7 107 229 HOH HOH B . H 3 HOH 8 108 232 HOH HOH B . H 3 HOH 9 109 234 HOH HOH B . H 3 HOH 10 110 242 HOH HOH B . H 3 HOH 11 111 258 HOH HOH B . H 3 HOH 12 112 266 HOH HOH B . H 3 HOH 13 113 280 HOH HOH B . H 3 HOH 14 114 298 HOH HOH B . H 3 HOH 15 115 307 HOH HOH B . H 3 HOH 16 116 314 HOH HOH B . H 3 HOH 17 117 357 HOH HOH B . H 3 HOH 18 118 358 HOH HOH B . H 3 HOH 19 119 363 HOH HOH B . H 3 HOH 20 120 368 HOH HOH B . H 3 HOH 21 121 369 HOH HOH B . H 3 HOH 22 122 391 HOH HOH B . H 3 HOH 23 123 392 HOH HOH B . H 3 HOH 24 124 393 HOH HOH B . H 3 HOH 25 125 394 HOH HOH B . H 3 HOH 26 126 395 HOH HOH B . H 3 HOH 27 127 402 HOH HOH B . H 3 HOH 28 128 411 HOH HOH B . H 3 HOH 29 129 419 HOH HOH B . H 3 HOH 30 130 420 HOH HOH B . H 3 HOH 31 131 421 HOH HOH B . H 3 HOH 32 132 422 HOH HOH B . H 3 HOH 33 133 423 HOH HOH B . H 3 HOH 34 134 424 HOH HOH B . H 3 HOH 35 135 426 HOH HOH B . I 3 HOH 1 101 199 HOH HOH C . I 3 HOH 2 102 201 HOH HOH C . I 3 HOH 3 103 206 HOH HOH C . I 3 HOH 4 104 209 HOH HOH C . I 3 HOH 5 105 210 HOH HOH C . I 3 HOH 6 106 218 HOH HOH C . I 3 HOH 7 107 226 HOH HOH C . I 3 HOH 8 108 243 HOH HOH C . I 3 HOH 9 109 254 HOH HOH C . I 3 HOH 10 110 260 HOH HOH C . I 3 HOH 11 111 261 HOH HOH C . I 3 HOH 12 112 264 HOH HOH C . I 3 HOH 13 113 265 HOH HOH C . I 3 HOH 14 114 269 HOH HOH C . I 3 HOH 15 115 270 HOH HOH C . I 3 HOH 16 116 291 HOH HOH C . I 3 HOH 17 117 294 HOH HOH C . I 3 HOH 18 118 302 HOH HOH C . I 3 HOH 19 119 306 HOH HOH C . I 3 HOH 20 120 315 HOH HOH C . I 3 HOH 21 121 361 HOH HOH C . I 3 HOH 22 122 373 HOH HOH C . I 3 HOH 23 123 374 HOH HOH C . I 3 HOH 24 124 377 HOH HOH C . I 3 HOH 25 125 382 HOH HOH C . I 3 HOH 26 126 403 HOH HOH C . I 3 HOH 27 127 416 HOH HOH C . I 3 HOH 28 128 431 HOH HOH C . J 3 HOH 1 201 202 HOH HOH D . J 3 HOH 2 202 221 HOH HOH D . J 3 HOH 3 203 223 HOH HOH D . J 3 HOH 4 204 230 HOH HOH D . J 3 HOH 5 205 233 HOH HOH D . J 3 HOH 6 206 235 HOH HOH D . J 3 HOH 7 207 238 HOH HOH D . J 3 HOH 8 208 245 HOH HOH D . J 3 HOH 9 209 248 HOH HOH D . J 3 HOH 10 210 251 HOH HOH D . J 3 HOH 11 211 256 HOH HOH D . J 3 HOH 12 212 259 HOH HOH D . J 3 HOH 13 213 262 HOH HOH D . J 3 HOH 14 214 268 HOH HOH D . J 3 HOH 15 215 272 HOH HOH D . J 3 HOH 16 216 274 HOH HOH D . J 3 HOH 17 217 275 HOH HOH D . J 3 HOH 18 218 276 HOH HOH D . J 3 HOH 19 219 277 HOH HOH D . J 3 HOH 20 220 278 HOH HOH D . J 3 HOH 21 221 282 HOH HOH D . J 3 HOH 22 222 283 HOH HOH D . J 3 HOH 23 223 289 HOH HOH D . J 3 HOH 24 224 292 HOH HOH D . J 3 HOH 25 225 293 HOH HOH D . J 3 HOH 26 226 295 HOH HOH D . J 3 HOH 27 227 300 HOH HOH D . J 3 HOH 28 228 304 HOH HOH D . J 3 HOH 29 229 308 HOH HOH D . J 3 HOH 30 230 318 HOH HOH D . J 3 HOH 31 231 338 HOH HOH D . J 3 HOH 32 232 345 HOH HOH D . J 3 HOH 33 233 352 HOH HOH D . J 3 HOH 34 234 354 HOH HOH D . J 3 HOH 35 235 364 HOH HOH D . J 3 HOH 36 236 365 HOH HOH D . J 3 HOH 37 237 375 HOH HOH D . J 3 HOH 38 238 380 HOH HOH D . J 3 HOH 39 239 381 HOH HOH D . J 3 HOH 40 240 398 HOH HOH D . J 3 HOH 41 241 399 HOH HOH D . J 3 HOH 42 242 401 HOH HOH D . J 3 HOH 43 243 414 HOH HOH D . J 3 HOH 44 244 418 HOH HOH D . K 3 HOH 1 101 250 HOH HOH E . K 3 HOH 2 102 267 HOH HOH E . K 3 HOH 3 103 279 HOH HOH E . K 3 HOH 4 104 290 HOH HOH E . K 3 HOH 5 105 309 HOH HOH E . K 3 HOH 6 106 319 HOH HOH E . K 3 HOH 7 107 366 HOH HOH E . K 3 HOH 8 108 371 HOH HOH E . K 3 HOH 9 109 400 HOH HOH E . L 3 HOH 1 101 200 HOH HOH F . L 3 HOH 2 102 207 HOH HOH F . L 3 HOH 3 103 213 HOH HOH F . L 3 HOH 4 104 220 HOH HOH F . L 3 HOH 5 105 224 HOH HOH F . L 3 HOH 6 106 236 HOH HOH F . L 3 HOH 7 107 237 HOH HOH F . L 3 HOH 8 108 263 HOH HOH F . L 3 HOH 9 109 285 HOH HOH F . L 3 HOH 10 110 311 HOH HOH F . L 3 HOH 11 111 317 HOH HOH F . L 3 HOH 12 112 322 HOH HOH F . L 3 HOH 13 113 339 HOH HOH F . L 3 HOH 14 114 340 HOH HOH F . L 3 HOH 15 115 341 HOH HOH F . L 3 HOH 16 116 427 HOH HOH F . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,G,H,I 2 1 D,E,F,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3310 ? 1 MORE -17 ? 1 'SSA (A^2)' 8020 ? 2 'ABSA (A^2)' 3100 ? 2 MORE -16 ? 2 'SSA (A^2)' 8010 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-19 2 'Structure model' 1 1 2017-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 2 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_entity_src_syn 2 2 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 43.5709 18.6864 64.8952 0.0661 0.2269 0.0670 0.0266 -0.0565 -0.0080 2.2604 1.7535 1.5004 -0.2119 -0.3260 -0.1581 -0.0456 0.0240 0.0215 -0.0001 0.1175 0.0004 0.1013 -0.1491 0.0356 'X-RAY DIFFRACTION' 2 ? refined 47.0531 18.3199 53.3141 0.1109 0.3359 0.1155 0.0242 -0.0739 -0.0032 1.4100 6.7192 3.1087 0.4243 -0.9798 -1.0038 -0.0893 0.0728 0.0164 0.0722 0.0750 0.0460 -0.4759 0.0542 -0.0889 'X-RAY DIFFRACTION' 3 ? refined 48.6210 16.1753 52.5788 0.0888 0.3008 0.0782 0.0292 -0.0227 0.0221 2.4302 7.8270 3.6764 0.4885 -0.0219 1.2875 -0.0845 0.0446 0.0399 0.1058 -0.1050 -0.4550 -0.3058 0.1033 0.1779 'X-RAY DIFFRACTION' 4 ? refined 45.0864 1.1239 76.8714 0.1259 0.2034 0.0413 0.0372 -0.0672 -0.0046 2.5654 2.8222 2.7639 0.1825 0.1324 0.2273 0.0777 -0.0356 -0.0421 -0.0157 -0.0653 -0.0668 0.2301 0.2059 0.0216 'X-RAY DIFFRACTION' 5 ? refined 40.1001 3.2042 88.1196 0.2473 0.1712 0.0198 -0.0043 0.0050 -0.0164 5.5024 8.7214 3.0855 2.9492 0.0154 0.2655 0.2491 -0.2764 0.0273 -0.1552 -0.2222 0.1367 0.7125 0.4237 -0.2555 'X-RAY DIFFRACTION' 6 ? refined 38.4843 5.0608 89.0283 0.2296 0.2456 0.0974 -0.0046 0.0095 -0.0303 3.6647 5.0134 3.2435 0.5540 0.2111 -0.0515 0.1789 -0.2378 0.0589 -0.3262 0.0116 0.5197 0.7119 0.1669 -0.2804 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 138 A 198 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 1 B 14 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 1 C 14 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 D 137 D 198 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 E 1 E 14 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 F 1 F 13 ? . . . . ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 PHASER 2.3.0 ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 5 REFMAC 5.7.0029 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # _pdbx_entry_details.entry_id 4RDU _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (135-198) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. IN THE CONSTRUCT LYS 135 WAS MUTATED TO HIS AND LYS 136 WAS MUTATED TO MET. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 271 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 113 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 189 ? ? CZ A ARG 189 ? ? NH2 A ARG 189 ? ? 116.95 120.30 -3.35 0.50 N 2 1 "C5'" C DC 1 ? ? "C4'" C DC 1 ? ? "C3'" C DC 1 ? ? 123.25 115.70 7.55 1.20 N 3 1 "C5'" C DC 1 ? ? "C4'" C DC 1 ? ? "O4'" C DC 1 ? ? 119.53 109.80 9.73 1.10 N 4 1 NE D ARG 154 ? ? CZ D ARG 154 ? ? NH1 D ARG 154 ? ? 123.38 120.30 3.08 0.50 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 154 ? CD ? A ARG 21 CD 2 1 Y 1 A ARG 154 ? NE ? A ARG 21 NE 3 1 Y 1 A ARG 154 ? CZ ? A ARG 21 CZ 4 1 Y 1 A ARG 154 ? NH1 ? A ARG 21 NH1 5 1 Y 1 A ARG 154 ? NH2 ? A ARG 21 NH2 6 1 Y 1 A LYS 193 ? CE ? A LYS 60 CE 7 1 Y 1 A LYS 193 ? NZ ? A LYS 60 NZ 8 1 Y 1 D VAL 137 ? CG1 ? D VAL 4 CG1 9 1 Y 1 D VAL 137 ? CG2 ? D VAL 4 CG2 10 1 Y 1 D LYS 193 ? CD ? D LYS 60 CD 11 1 Y 1 D LYS 193 ? CE ? D LYS 60 CE 12 1 Y 1 D LYS 193 ? NZ ? D LYS 60 NZ 13 1 Y 1 D LYS 197 ? CG ? D LYS 64 CG 14 1 Y 1 D LYS 197 ? CD ? D LYS 64 CD 15 1 Y 1 D LYS 197 ? CE ? D LYS 64 CE 16 1 Y 1 D LYS 197 ? NZ ? D LYS 64 NZ 17 1 Y 1 D ASN 198 ? CG ? D ASN 65 CG 18 1 Y 1 D ASN 198 ? OD1 ? D ASN 65 OD1 19 1 Y 1 D ASN 198 ? ND2 ? D ASN 65 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A HIS 135 ? A HIS 2 3 1 Y 1 A MET 136 ? A MET 3 4 1 Y 1 A VAL 137 ? A VAL 4 5 1 Y 1 D GLY 0 ? D GLY 1 6 1 Y 1 D HIS 135 ? D HIS 2 7 1 Y 1 D MET 136 ? D MET 3 8 1 Y 1 F DG 14 ? F DG 14 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4RDU 'double helix' 4RDU 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 2 1_555 C DC 13 1_555 -0.362 -0.241 -0.190 7.868 -0.065 -0.137 1 B_DG2:DC13_C B 2 ? C 13 ? 19 1 1 B DA 3 1_555 C DT 12 1_555 -0.048 -0.120 0.271 3.022 -13.654 -1.542 2 B_DA3:DT12_C B 3 ? C 12 ? 20 1 1 B DC 4 1_555 C DG 11 1_555 0.130 -0.213 0.461 1.157 -15.114 -1.185 3 B_DC4:DG11_C B 4 ? C 11 ? 19 1 1 B DT 5 1_555 C DA 10 1_555 -0.078 -0.117 0.086 -3.170 -12.692 2.980 4 B_DT5:DA10_C B 5 ? C 10 ? 20 1 1 B DA 6 1_555 C DT 9 1_555 0.054 -0.097 -0.162 7.465 -9.803 4.793 5 B_DA6:DT9_C B 6 ? C 9 ? 20 1 1 B DA 7 1_555 C DT 8 1_555 0.050 -0.174 0.092 7.589 -14.117 3.250 6 B_DA7:DT8_C B 7 ? C 8 ? 20 1 1 B DT 8 1_555 C DA 7 1_555 0.067 -0.043 0.000 4.404 -14.580 6.649 7 B_DT8:DA7_C B 8 ? C 7 ? 20 1 1 B DT 9 1_555 C DA 6 1_555 -0.070 -0.123 -0.341 3.370 -15.084 4.027 8 B_DT9:DA6_C B 9 ? C 6 ? 20 1 1 B DA 10 1_555 C DT 5 1_555 -0.045 -0.190 -0.231 -7.868 -7.934 5.037 9 B_DA10:DT5_C B 10 ? C 5 ? 20 1 1 B DG 11 1_555 C DC 4 1_555 -0.327 -0.219 -0.027 -10.015 -7.467 0.329 10 B_DG11:DC4_C B 11 ? C 4 ? 19 1 1 B DT 12 1_555 C DA 3 1_555 0.114 -0.037 0.122 -7.766 -7.203 -0.880 11 B_DT12:DA3_C B 12 ? C 3 ? 20 1 1 B DC 13 1_555 C DG 2 1_555 0.415 -0.152 -0.103 3.860 -4.931 2.401 12 B_DC13:DG2_C B 13 ? C 2 ? 19 1 1 B DG 14 1_555 C DC 1 1_555 0.192 -0.139 0.473 7.643 -16.037 -7.425 13 B_DG14:DC1_C B 14 ? C 1 ? 19 1 1 E DG 2 1_555 F DC 13 1_555 -0.414 0.205 -0.082 6.232 -2.407 5.895 14 E_DG2:DC13_F E 2 ? F 13 ? 19 1 1 E DA 3 1_555 F DT 12 1_555 0.441 0.023 0.096 10.331 -13.373 0.932 15 E_DA3:DT12_F E 3 ? F 12 ? 20 1 1 E DC 4 1_555 F DG 11 1_555 0.058 -0.080 0.145 4.824 -18.090 5.351 16 E_DC4:DG11_F E 4 ? F 11 ? 19 1 1 E DT 5 1_555 F DA 10 1_555 0.220 -0.359 0.124 3.650 -6.665 1.723 17 E_DT5:DA10_F E 5 ? F 10 ? 20 1 1 E DA 6 1_555 F DT 9 1_555 -0.199 -0.136 0.004 6.120 -14.221 3.500 18 E_DA6:DT9_F E 6 ? F 9 ? 20 1 1 E DA 7 1_555 F DT 8 1_555 -0.130 -0.040 0.134 3.015 -14.700 1.219 19 E_DA7:DT8_F E 7 ? F 8 ? 20 1 1 E DT 8 1_555 F DA 7 1_555 -0.073 -0.078 0.298 1.012 -16.242 6.029 20 E_DT8:DA7_F E 8 ? F 7 ? 20 1 1 E DT 9 1_555 F DA 6 1_555 -0.099 -0.079 -0.071 -0.240 -13.267 2.709 21 E_DT9:DA6_F E 9 ? F 6 ? 20 1 1 E DA 10 1_555 F DT 5 1_555 0.096 -0.167 -0.293 -12.526 -6.452 6.245 22 E_DA10:DT5_F E 10 ? F 5 ? 20 1 1 E DG 11 1_555 F DC 4 1_555 -0.196 -0.122 0.006 -8.620 -5.830 -0.787 23 E_DG11:DC4_F E 11 ? F 4 ? 19 1 1 E DT 12 1_555 F DA 3 1_555 -0.019 0.042 0.220 -6.150 -6.410 -1.284 24 E_DT12:DA3_F E 12 ? F 3 ? 20 1 1 E DC 13 1_555 F DG 2 1_555 0.208 -0.073 -0.001 -0.037 -0.931 3.578 25 E_DC13:DG2_F E 13 ? F 2 ? 19 1 1 E DG 14 1_555 F DC 1 1_555 0.104 -0.131 0.153 4.441 -10.550 -10.064 26 E_DG14:DC1_F E 14 ? F 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 2 1_555 C DC 13 1_555 B DA 3 1_555 C DT 12 1_555 -0.650 -0.249 3.408 -5.834 -2.763 39.346 -0.027 0.239 3.474 -4.070 8.594 39.851 1 BB_DG2DA3:DT12DC13_CC B 2 ? C 13 ? B 3 ? C 12 ? 1 B DA 3 1_555 C DT 12 1_555 B DC 4 1_555 C DG 11 1_555 0.492 -1.300 3.298 -2.022 4.748 35.092 -2.816 -1.098 3.069 7.823 3.331 35.458 2 BB_DA3DC4:DG11DT12_CC B 3 ? C 12 ? B 4 ? C 11 ? 1 B DC 4 1_555 C DG 11 1_555 B DT 5 1_555 C DA 10 1_555 -0.138 -0.745 3.349 6.234 3.033 32.619 -1.808 1.288 3.189 5.325 -10.945 33.328 3 BB_DC4DT5:DA10DG11_CC B 4 ? C 11 ? B 5 ? C 10 ? 1 B DT 5 1_555 C DA 10 1_555 B DA 6 1_555 C DT 9 1_555 -0.298 0.763 3.186 3.216 7.661 33.007 0.085 1.021 3.234 13.224 -5.551 34.008 4 BB_DT5DA6:DT9DA10_CC B 5 ? C 10 ? B 6 ? C 9 ? 1 B DA 6 1_555 C DT 9 1_555 B DA 7 1_555 C DT 8 1_555 0.211 -0.532 3.193 -2.921 2.805 32.628 -1.404 -0.856 3.107 4.969 5.175 32.871 5 BB_DA6DA7:DT8DT9_CC B 6 ? C 9 ? B 7 ? C 8 ? 1 B DA 7 1_555 C DT 8 1_555 B DT 8 1_555 C DA 7 1_555 0.677 -0.921 3.265 1.327 0.417 32.738 -1.704 -0.972 3.278 0.740 -2.353 32.766 6 BB_DA7DT8:DA7DT8_CC B 7 ? C 8 ? B 8 ? C 7 ? 1 B DT 8 1_555 C DA 7 1_555 B DT 9 1_555 C DA 6 1_555 -0.169 -0.353 3.209 4.056 4.811 34.517 -1.287 0.871 3.095 8.026 -6.765 35.069 7 BB_DT8DT9:DA6DA7_CC B 8 ? C 7 ? B 9 ? C 6 ? 1 B DT 9 1_555 C DA 6 1_555 B DA 10 1_555 C DT 5 1_555 1.201 0.635 3.521 3.209 8.456 38.436 -0.170 -1.358 3.659 12.632 -4.794 39.446 8 BB_DT9DA10:DT5DA6_CC B 9 ? C 6 ? B 10 ? C 5 ? 1 B DA 10 1_555 C DT 5 1_555 B DG 11 1_555 C DC 4 1_555 -1.345 -0.005 3.283 -7.626 8.615 33.105 -1.373 1.028 3.395 14.582 12.908 34.995 9 BB_DA10DG11:DC4DT5_CC B 10 ? C 5 ? B 11 ? C 4 ? 1 B DG 11 1_555 C DC 4 1_555 B DT 12 1_555 C DA 3 1_555 -0.806 -0.721 3.256 0.301 0.269 34.901 -1.242 1.390 3.244 0.448 -0.502 34.904 10 BB_DG11DT12:DA3DC4_CC B 11 ? C 4 ? B 12 ? C 3 ? 1 B DT 12 1_555 C DA 3 1_555 B DC 13 1_555 C DG 2 1_555 0.983 0.833 3.076 3.737 1.950 35.819 1.080 -1.078 3.198 3.158 -6.050 36.058 11 BB_DT12DC13:DG2DA3_CC B 12 ? C 3 ? B 13 ? C 2 ? 1 B DC 13 1_555 C DG 2 1_555 B DG 14 1_555 C DC 1 1_555 -0.952 0.807 3.213 -4.879 2.783 38.250 0.874 0.832 3.353 4.220 7.396 38.645 12 BB_DC13DG14:DC1DG2_CC B 13 ? C 2 ? B 14 ? C 1 ? 1 E DG 2 1_555 F DC 13 1_555 E DA 3 1_555 F DT 12 1_555 -0.533 0.327 3.239 -3.335 0.213 41.632 0.436 0.399 3.271 0.298 4.683 41.760 13 EE_DG2DA3:DT12DC13_FF E 2 ? F 13 ? E 3 ? F 12 ? 1 E DA 3 1_555 F DT 12 1_555 E DC 4 1_555 F DG 11 1_555 0.649 -0.943 3.394 -0.487 -2.308 29.059 -1.346 -1.400 3.445 -4.591 0.969 29.153 14 EE_DA3DC4:DG11DT12_FF E 3 ? F 12 ? E 4 ? F 11 ? 1 E DC 4 1_555 F DG 11 1_555 E DT 5 1_555 F DA 10 1_555 -0.266 -0.560 3.297 1.718 4.773 35.201 -1.610 0.685 3.180 7.842 -2.822 35.553 15 EE_DC4DT5:DA10DG11_FF E 4 ? F 11 ? E 5 ? F 10 ? 1 E DT 5 1_555 F DA 10 1_555 E DA 6 1_555 F DT 9 1_555 0.078 0.258 3.221 2.984 5.529 33.868 -0.419 0.329 3.217 9.391 -5.068 34.429 16 EE_DT5DA6:DT9DA10_FF E 5 ? F 10 ? E 6 ? F 9 ? 1 E DA 6 1_555 F DT 9 1_555 E DA 7 1_555 F DT 8 1_555 0.132 -0.447 3.239 -2.807 1.973 33.462 -1.091 -0.679 3.187 3.415 4.860 33.632 17 EE_DA6DA7:DT8DT9_FF E 6 ? F 9 ? E 7 ? F 8 ? 1 E DA 7 1_555 F DT 8 1_555 E DT 8 1_555 F DA 7 1_555 0.516 -0.911 3.281 -0.172 -0.844 33.917 -1.426 -0.911 3.299 -1.447 0.295 33.928 18 EE_DA7DT8:DA7DT8_FF E 7 ? F 8 ? E 8 ? F 7 ? 1 E DT 8 1_555 F DA 7 1_555 E DT 9 1_555 F DA 6 1_555 -0.213 -0.291 3.183 2.929 -0.011 35.510 -0.474 0.762 3.156 -0.018 -4.793 35.626 19 EE_DT8DT9:DA6DA7_FF E 8 ? F 7 ? E 9 ? F 6 ? 1 E DT 9 1_555 F DA 6 1_555 E DA 10 1_555 F DT 5 1_555 1.330 0.621 3.596 5.906 6.561 40.297 0.073 -1.161 3.797 9.388 -8.450 41.213 20 EE_DT9DA10:DT5DA6_FF E 9 ? F 6 ? E 10 ? F 5 ? 1 E DA 10 1_555 F DT 5 1_555 E DG 11 1_555 F DC 4 1_555 -1.578 0.196 3.105 -7.674 7.135 33.490 -0.757 1.457 3.345 12.022 12.929 35.046 21 EE_DA10DG11:DC4DT5_FF E 10 ? F 5 ? E 11 ? F 4 ? 1 E DG 11 1_555 F DC 4 1_555 E DT 12 1_555 F DA 3 1_555 -0.798 -0.671 3.209 -1.658 -1.234 33.906 -0.954 1.104 3.265 -2.113 2.841 33.967 22 EE_DG11DT12:DA3DC4_FF E 11 ? F 4 ? E 12 ? F 3 ? 1 E DT 12 1_555 F DA 3 1_555 E DC 13 1_555 F DG 2 1_555 1.233 0.662 3.183 3.161 2.353 36.195 0.734 -1.536 3.311 3.773 -5.070 36.401 23 EE_DT12DC13:DG2DA3_FF E 12 ? F 3 ? E 13 ? F 2 ? 1 E DC 13 1_555 F DG 2 1_555 E DG 14 1_555 F DC 1 1_555 -1.470 0.714 3.267 -3.537 1.093 34.771 1.020 1.900 3.416 1.822 5.898 34.962 24 EE_DC13DG14:DC1DG2_FF E 13 ? F 2 ? E 14 ? F 1 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #