HEADER TRANSCRIPTION 22-SEP-14 4REE TITLE CRYSTAL STRUCTURE OF TR3 LBD IN COMPLEX WITH MOLECULE 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 1; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 351-598; COMPND 5 SYNONYM: EARLY RESPONSE PROTEIN NAK1, NUCLEAR HORMONE RECEPTOR COMPND 6 NUR/77, NUR77, ORPHAN NUCLEAR RECEPTOR HMR, ORPHAN NUCLEAR RECEPTOR COMPND 7 TR3, ST-59, TESTICULAR RECEPTOR 3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GFRP1, HMR, NAK1, NR4A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS LBD, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR F.W.LI,Q.X.CAI,A.Z.LI,X.Y.TIAN,W.J.WANG,W.YUAN,P.P.HOU,Q.WU,T.W.LIN REVDAT 2 22-NOV-17 4REE 1 REMARK REVDAT 1 09-SEP-15 4REE 0 JRNL AUTH W.J.WANG,Y.WANG,P.P.HOU,F.W.LI,B.ZHOU,H.Z.CHEN,X.L.BIAN, JRNL AUTH 2 Q.X.CAI,Y.Z.XING,J.P.HE,H.ZHANG,P.Q.HUANG,T.LIN,Q.WU JRNL TITL INDUCTION OF AUTOPHAGIC DEATH IN CANCER CELLS BY AGONIZING JRNL TITL 2 TR3 AND ATTENUATING AKT2 ACTIVITY JRNL REF CHEM.BIOL. V. 22 1040 2015 JRNL REFN ISSN 1074-5521 JRNL PMID 26235054 JRNL DOI 10.1016/J.CHEMBIOL.2015.06.023 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 28811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1548 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.257 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3754 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3720 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5081 ; 1.806 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8565 ; 1.316 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 5.082 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;39.886 ;23.226 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 651 ;21.194 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.443 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 587 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4122 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 822 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1863 ; 4.775 ; 5.094 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1862 ; 4.770 ; 5.092 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2320 ; 6.754 ; 7.594 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1891 ; 5.945 ; 5.574 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 31 267 A 31 267 13325 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4REE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000087242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30429 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM CITRATE, GLYCEROL, PH REMARK 280 4.2, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.41450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.26550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.30750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.26550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.41450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.30750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 20 REMARK 465 LYS B 21 REMARK 465 PRO B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 24 REMARK 465 PRO B 25 REMARK 465 PRO B 26 REMARK 465 ASP B 27 REMARK 465 ALA B 28 REMARK 465 SER B 29 REMARK 465 PRO B 30 REMARK 465 PHE B 64 REMARK 465 GLY B 65 REMARK 465 GLN B 216 REMARK 465 PRO B 217 REMARK 465 LEU B 268 REMARK 465 GLU B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 465 SER A 20 REMARK 465 LYS A 21 REMARK 465 PRO A 22 REMARK 465 LYS A 23 REMARK 465 GLN A 24 REMARK 465 PRO A 25 REMARK 465 PRO A 26 REMARK 465 ASP A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 GLU A 214 REMARK 465 PRO A 215 REMARK 465 GLN A 216 REMARK 465 PRO A 217 REMARK 465 LEU A 268 REMARK 465 GLU A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 52 OG SER B 54 1.67 REMARK 500 OE1 GLU B 67 OE2 GLU B 248 1.82 REMARK 500 OD2 ASP A 52 OG SER A 54 1.98 REMARK 500 O VAL B 60 NE2 HIS B 63 2.00 REMARK 500 O ALA B 218 N SER B 222 2.01 REMARK 500 O VAL A 211 N GLY A 213 2.05 REMARK 500 O PRO B 62 O HOH B 450 2.16 REMARK 500 OD1 ASP B 103 O HOH B 422 2.18 REMARK 500 NZ LYS A 259 OD2 ASP A 263 2.19 REMARK 500 O HOH A 428 O HOH A 478 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 128 OD2 ASP A 249 3545 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 61 158.80 168.35 REMARK 500 ASP B 68 -168.63 -116.93 REMARK 500 ALA B 212 73.36 -152.08 REMARK 500 PRO B 266 36.93 -67.10 REMARK 500 THR A 48 -11.01 -49.54 REMARK 500 ALA A 212 -53.16 47.85 REMARK 500 PRO A 266 52.68 -57.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3MZ A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RE8 RELATED DB: PDB REMARK 900 RELATED ID: 4REF RELATED DB: PDB REMARK 900 RELATED ID: 4WHG RELATED DB: PDB REMARK 900 RELATED ID: 4WHF RELATED DB: PDB DBREF 4REE B 20 267 UNP P22736 NR4A1_HUMAN 351 598 DBREF 4REE A 20 267 UNP P22736 NR4A1_HUMAN 351 598 SEQADV 4REE LEU B 268 UNP P22736 EXPRESSION TAG SEQADV 4REE GLU B 269 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS B 270 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS B 271 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS B 272 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS B 273 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS B 274 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS B 275 UNP P22736 EXPRESSION TAG SEQADV 4REE LEU A 268 UNP P22736 EXPRESSION TAG SEQADV 4REE GLU A 269 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS A 270 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS A 271 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS A 272 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS A 273 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS A 274 UNP P22736 EXPRESSION TAG SEQADV 4REE HIS A 275 UNP P22736 EXPRESSION TAG SEQRES 1 B 256 SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA ASN SEQRES 2 B 256 LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER GLY SEQRES 3 B 256 PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN GLU SEQRES 4 B 256 LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY ASP SEQRES 5 B 256 VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU GLU SEQRES 6 B 256 VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE ALA SEQRES 7 B 256 GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU SER SEQRES 8 B 256 ALA PHE LEU GLU LEU PHE ILE LEU ARG LEU ALA TYR ARG SEQRES 9 B 256 SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER GLY SEQRES 10 B 256 LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE GLY SEQRES 11 B 256 ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER LEU SEQRES 12 B 256 HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS LEU SEQRES 13 B 256 SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU GLN SEQRES 14 B 256 GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE ALA SEQRES 15 B 256 SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY GLU SEQRES 16 B 256 PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY LYS SEQRES 17 B 256 LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU GLN SEQRES 18 B 256 ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO PRO SEQRES 19 B 256 PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU PRO SEQRES 20 B 256 PHE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 256 SER LYS PRO LYS GLN PRO PRO ASP ALA SER PRO ALA ASN SEQRES 2 A 256 LEU LEU THR SER LEU VAL ARG ALA HIS LEU ASP SER GLY SEQRES 3 A 256 PRO SER THR ALA LYS LEU ASP TYR SER LYS PHE GLN GLU SEQRES 4 A 256 LEU VAL LEU PRO HIS PHE GLY LYS GLU ASP ALA GLY ASP SEQRES 5 A 256 VAL GLN GLN PHE TYR ASP LEU LEU SER GLY SER LEU GLU SEQRES 6 A 256 VAL ILE ARG LYS TRP ALA GLU LYS ILE PRO GLY PHE ALA SEQRES 7 A 256 GLU LEU SER PRO ALA ASP GLN ASP LEU LEU LEU GLU SER SEQRES 8 A 256 ALA PHE LEU GLU LEU PHE ILE LEU ARG LEU ALA TYR ARG SEQRES 9 A 256 SER LYS PRO GLY GLU GLY LYS LEU ILE PHE CYS SER GLY SEQRES 10 A 256 LEU VAL LEU HIS ARG LEU GLN CYS ALA ARG GLY PHE GLY SEQRES 11 A 256 ASP TRP ILE ASP SER ILE LEU ALA PHE SER ARG SER LEU SEQRES 12 A 256 HIS SER LEU LEU VAL ASP VAL PRO ALA PHE ALA CYS LEU SEQRES 13 A 256 SER ALA LEU VAL LEU ILE THR ASP ARG HIS GLY LEU GLN SEQRES 14 A 256 GLU PRO ARG ARG VAL GLU GLU LEU GLN ASN ARG ILE ALA SEQRES 15 A 256 SER CYS LEU LYS GLU HIS VAL ALA ALA VAL ALA GLY GLU SEQRES 16 A 256 PRO GLN PRO ALA SER CYS LEU SER ARG LEU LEU GLY LYS SEQRES 17 A 256 LEU PRO GLU LEU ARG THR LEU CYS THR GLN GLY LEU GLN SEQRES 18 A 256 ARG ILE PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO PRO SEQRES 19 A 256 PRO PRO ILE ILE ASP LYS ILE PHE MET ASP THR LEU PRO SEQRES 20 A 256 PHE LEU GLU HIS HIS HIS HIS HIS HIS HET GOL B 301 6 HET GOL B 302 6 HET GOL A 301 6 HET 3MZ A 302 19 HETNAM GOL GLYCEROL HETNAM 3MZ 1-(2,3,4-TRIHYDROXYPHENYL)NONAN-1-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 3MZ C15 H22 O4 FORMUL 7 HOH *152(H2 O) HELIX 1 1 ALA B 31 SER B 44 1 14 HELIX 2 2 ASP B 68 LYS B 92 1 25 HELIX 3 3 GLY B 95 LEU B 99 5 5 HELIX 4 4 SER B 100 SER B 124 1 25 HELIX 5 5 LYS B 125 GLU B 128 5 4 HELIX 6 6 ARG B 141 GLY B 149 1 9 HELIX 7 7 ASP B 150 LEU B 165 1 16 HELIX 8 8 ASP B 168 ILE B 181 1 14 HELIX 9 9 GLU B 189 VAL B 211 1 23 HELIX 10 10 CYS B 220 GLY B 226 1 7 HELIX 11 11 GLY B 226 ASP B 249 1 24 HELIX 12 12 PRO B 254 THR B 264 1 11 HELIX 13 13 ALA A 31 SER A 44 1 14 HELIX 14 14 ASP A 68 LYS A 92 1 25 HELIX 15 15 GLY A 95 LEU A 99 5 5 HELIX 16 16 SER A 100 SER A 124 1 25 HELIX 17 17 LYS A 125 GLU A 128 5 4 HELIX 18 18 ARG A 141 GLY A 149 1 9 HELIX 19 19 ASP A 150 SER A 164 1 15 HELIX 20 20 ASP A 168 ILE A 181 1 14 HELIX 21 21 GLU A 189 ALA A 212 1 24 HELIX 22 22 SER A 219 GLY A 226 1 8 HELIX 23 23 LYS A 227 ASP A 249 1 23 HELIX 24 24 PRO A 254 THR A 264 1 11 SHEET 1 A 2 LYS B 130 ILE B 132 0 SHEET 2 A 2 VAL B 138 HIS B 140 -1 O LEU B 139 N LEU B 131 SHEET 1 B 2 LYS A 130 ILE A 132 0 SHEET 2 B 2 VAL A 138 HIS A 140 -1 O LEU A 139 N LEU A 131 LINK OG1 THR A 182 O10 3MZ A 302 1555 1555 1.50 CISPEP 1 LEU B 61 PRO B 62 0 -8.68 CISPEP 2 GLU B 214 PRO B 215 0 -7.26 CISPEP 3 PRO A 30 ALA A 31 0 -7.34 SITE 1 AC1 9 HIS B 41 SER B 44 GLY B 45 PRO B 46 SITE 2 AC1 9 ARG B 119 ARG B 123 HOH B 419 HOH B 428 SITE 3 AC1 9 HOH B 453 SITE 1 AC2 6 GLY A 95 ARG A 192 GLU A 195 ARG A 199 SITE 2 AC2 6 GLU B 189 ARG B 192 SITE 1 AC3 8 HIS A 41 SER A 44 GLY A 45 PRO A 46 SITE 2 AC3 8 ARG A 119 ARG A 123 HOH A 419 HOH A 465 SITE 1 AC4 12 LEU A 59 LEU A 118 LEU A 175 LEU A 178 SITE 2 AC4 12 ILE A 181 THR A 182 GLN A 197 LEU A 224 SITE 3 AC4 12 LYS A 227 LEU A 228 HOH A 450 HOH A 475 CRYST1 74.829 76.615 128.531 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013364 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007780 0.00000